Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq16162 116 1e-20 seq16048 98.7 3e-15 seq15946 98.7 3e-15 seq11586 98.7 3e-15 seq16271 91.5 4e-13 >seq16162 Length=245457 Score = 116 bits (128), Expect = 1e-20 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| || ||||| || || ||| || || |||| ||| ||| | ||| | Sbjct 41074 TTGCTTCCTTGTATGCATGAAAGAGGACAGCATTGAAGGAATCTATGATACATTGAAGGA 41133 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| ||||| ||| ||| || || |||||||| ||||| |||||| ||||||| Sbjct 41134 GTGTGCTGTTATTAGCAAATCTGCTGGTGGTATTGGTGTGTCGATTCACAATATTCGTGC 41193 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | ||||||||||| || ||| ||| ||| ||||| | || |||||| | Sbjct 41194 AACCGGTAGTTACATTCGGGGTACAAATGGAACCTCAAATGGTATTACCCCGATGCTTAG 41253 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||||| | | ||||| | ||||| ||||| |||||||| || | ||||| Sbjct 41254 GGTGTTCAATGACACTGCTCGATACGTTGACCAAGGTGGAGGCAAAAGAAAAGG 41307 Score = 95.1 bits (104), Expect = 3e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 || || || ||||| || || |||||| ||| || ||||| ||||| ||||| |||| Sbjct 41893 CAAATGGAAACAGGGACGCCGTATATGCTGTTTAAGGATTCATGCAATCGCAAAAGCAAC 41952 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||| | || || || ||| | ||||| ||||| ||||||||||| ||||| Sbjct 41953 CAGCAGAATCTCGGCACGATTAAATCTTCGAACCTGTGTACTGAGATTATTGAGTACACG 42012 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 ||| || ||||| || |||||| | ||||| || || ||||| Sbjct 42013 AGTCCAACTGAAACTGCAGTCTGTAACTTGGCGTCCATTGCTCTTCC 42059 >seq16048 Length=246288 Score = 98.7 bits (108), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 14/217 (6%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA------TTCGCG 22488 ||||| ||||| ||||||||| || ||||| ||| |||| || || Sbjct 204305 AAGAAGAAGGCGGATTGGGCGTTGCGTTGGAT------TGATGGTTCTGAGACGTTTGCT 204358 Query 22489 GAACGTCTTATTGCATTTGCTGTG-GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGC 22547 || | |||| || ||||| ||| || || || || ||||||||||| || || || Sbjct 204359 GAGAGGATTATCGCTTTTGC-GTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGC 204417 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 || |||||||| ||||| |||| | |||||||||| |||| || |||||||| | || Sbjct 204418 GATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCAT 204477 Query 22608 TAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 | || || ||||||||||| ||| ||||| ||| Sbjct 204478 TTCTCGTGACGAGGGTCTTCACTGCGACTTTGCTTGT 204514 >seq15946 Length=172941 Score = 98.7 bits (108), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 14/217 (6%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA------TTCGCG 22488 ||||| ||||| ||||||||| || ||||| ||| |||| || || Sbjct 58370 AAGAAGAAGGCGGATTGGGCGTTGCGTTGGAT------TGATGGTTCTGAGACGTTTGCT 58423 Query 22489 GAACGTCTTATTGCATTTGCTGTG-GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGC 22547 || | |||| || ||||| ||| || || || || ||||||||||| || || || Sbjct 58424 GAGAGGATTATCGCTTTTGC-GTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGC 58482 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 || |||||||| ||||| |||| | |||||||||| |||| || |||||||| | || Sbjct 58483 GATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCAT 58542 Query 22608 TAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 | || || ||||||||||| ||| ||||| ||| Sbjct 58543 TTCTCGTGACGAGGGTCTTCACTGCGACTTTGCTTGT 58579 >seq11586 Length=26096 Score = 98.7 bits (108), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 14/217 (6%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA------TTCGCG 22488 ||||| ||||| ||||||||| || ||||| ||| |||| || || Sbjct 4128 AAGAAGAAGGCGGATTGGGCGTTGCGTTGGAT------TGATGGTTCTGAGACGTTTGCT 4181 Query 22489 GAACGTCTTATTGCATTTGCTGTG-GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGC 22547 || | |||| || ||||| ||| || || || || ||||||||||| || || || Sbjct 4182 GAGAGGATTATCGCTTTTGC-GTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGC 4240 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 || |||||||| ||||| |||| | |||||||||| |||| || |||||||| | || Sbjct 4241 GATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCAT 4300 Query 22608 TAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 | || || ||||||||||| ||| ||||| ||| Sbjct 4301 TTCTCGTGACGAGGGTCTTCACTGCGACTTTGCTTGT 4337 >seq16271 Length=354655 Score = 91.5 bits (100), Expect = 4e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||||||||| || | || ||| | ||| | |||||| |||| Sbjct 278938 ATGAAAGAGGACAGCATCGAGGGCATTTACGATACATTGAAGGAATGTGCTGTTATAAGT 278879 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || || |||||||| || || |||||| ||||||| |||| ||||||||| Sbjct 278878 AAATCTGCTGGAGGTATTGGTGTCTCTATTCACAATATTCGTGCCACAGG-CAGTTACAT 278820 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||| ||||| || ||||| | | || Sbjct 278819 TCGTGGCACAAATGGAGCATCAAATGGCATTACTCCGATGCTGCGGGTGTTCAATGACAC 278760 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 || | || || || || || ||||| | | | ||||| Sbjct 278759 CGCTCGATATGTTGATCAAGGAGGAGGGAGGAGAAAAGG 278721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302600665658816