Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq14446 102 7e-17 seq13853 96.9 3e-15 seq15753 87.8 2e-12 seq13717 86.0 5e-12 >seq14446 Length=62709 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || |||||||| ||| | |||||| |||| |||||| || | Sbjct 48042 ATGCAGATTTTCGTGAAGACTTTAACTGGGAAAACCATTACCCTCGAGGTCGAGAGCAGC 47983 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| || || |||||||| || || || || Sbjct 47982 GACACCATCGACAATGTCAAGACTAAGATCCAAGATAAGGAAGGCATCCCACCTGACCAG 47923 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| ||||| | | | | || || ||||| |||| | | || | || || || || Sbjct 47922 CAGAGGCTGATCTTTGCCTGGAAACAGCTCGAGGATGGCCG-TACTTTGGCTGACTACAA 47864 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||| || ||||| || |||| || || Sbjct 47863 CATTCAGAAGGAATCCACCCTTCACTTGGT 47834 >seq13853 Length=43806 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | |||||||| |||||||| | || || ||| | | Sbjct 19106 ATGCAGATCTTCGTGAAAACGCTGACTGGAAAGACGATTACCCTTGAGGTTGAGAGCTCC 19165 Query 24051 GACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || || || ||| ||| || || || ||||| || || ||||| Sbjct 19166 GACACCATCGACAATGTTAAGACCAAA-ATTCAGGATAAGGAGGGCATTCCCCCAGATCA 19224 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||||| ||||||| | ||| |||||||| || |||| | || | || ||||||| Sbjct 19225 GCAGAGGCTGATTTTTGCCGGGAAGCAACTTGAGGATGGTCG-TACTTTGGCTGATTATA 19283 Query 24169 ACATTCAAAAAGAATCTAC 24187 ||||||| || || || || Sbjct 19284 ACATTCAGAAGGAGTCGAC 19302 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| || || || || || | || || |||| || ||| || | Sbjct 9522 ATGCAGATTTTTGTAAAGACCTTGACGGGGAAGACCATCACTCTCGAGGTTGAGAGCAGC 9581 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || ||||| || || || || Sbjct 9582 GACACCATCGACAACGTCAAGACAAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 9641 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| || || ||||| ||||| |||| | | | ||| |||||| Sbjct 9642 CAGCGTTTGATTTTCGCAGGAAAGCAGCTCGAGGATGGGCGCACATTGGCCGACTATAAC 9701 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||| || || || | ||| | ||||| Sbjct 9702 ATTCAAAAGGAGTCAACTCTCCATCTGGTGTT 9733 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || | || ||| |||| || ||| || | Sbjct 19562 ATGCAGATTTTCGTGAAGACCTTGACTGGGAAGACTATCACCCTCGAGGTTGAGAGCAGC 19621 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || ||||| || || || || Sbjct 19622 GACACCATCGACAACGTCAAGACAAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 19681 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| || || ||||| ||||| |||| | | | ||| |||||| Sbjct 19682 CAGCGTTTGATTTTCGCAGGAAAGCAGCTCGAGGATGGGCGCACATTGGCCGACTATAAC 19741 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||| || || || | ||| | ||||| Sbjct 19742 ATTCAAAAGGAGTCAACTCTCCATCTGGTGTT 19773 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || ||||| |||| || | || || ||| | Sbjct 19334 ATGCAAATCTTCGTGAAGACTTTGACAGGAAAGACGATCACTCTAGAGGTGGAGAGCTCG 19393 Query 24051 GACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | ||||| |||||| ||| ||||| || || || || || || || Sbjct 19394 GACACCATTGACAACGTCAAGACAAAA-ATTCAGGACAAGGAGGGTATCCCCCCAGACCA 19452 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||||||| |||| | | || ||||| ||||| || | | | ||| || || || | Sbjct 19453 ACAGAGATTGATATTTGCTGGAAAGCAGCTCGAGGACGGTCGTA-CGTTGGCCGACTACA 19511 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||||| ||||| || | ||| | ||||| Sbjct 19512 ACATTCAAAAGGAATCGACCCTCCATCTGGTGTT 19545 >seq15753 Length=130878 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 24009 ACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTC 24068 || || || ||||| |||| || | || || ||| | |||||||| || | ||| Sbjct 124132 ACTTTGACAGGAAAGACGATCACGCTAGAGGTGGAGAGCTCGGACACCATTGACAACGTC 124073 Query 24069 AA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGG 24127 || |||||| ||| | ||||| | || || ||||| || ||||||||| |||| | | Sbjct 124072 AAGACAAAA-ATTCCGGACAAGGGGGGTATCCCTCCAGACCAACAGAGATTGATATTTGC 124014 Query 24128 CGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTA 24186 || ||||| |||||||| | | | ||| || || || ||||||||||| ||||| | Sbjct 124013 TGGAAAGCAGCTCGAAGACGGTCGTA-CGTTGGCCGACTACAACATTCAAAAGGAATCGA 123955 Query 24187 CAATTCATTTAGTGTT 24202 | | ||||| ||||| Sbjct 123954 CCCTCCATTTGGTGTT 123939 >seq13717 Length=68558 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 ||| |||||||| | || || ||||| |||| || || |||| ||| | || || || Sbjct 35241 AAAAAAAATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTAGAGGTTGA 35182 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 || ||||||||||| | || ||| ||||| ||||| |||||||| || || Sbjct 35181 ATCCTCAGACACCATCGACAATGTGAAAACCAAGATCCAAGACAAGGAAGGCATTCCACC 35122 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 || ||||| | || |||| || ||| || || || ||||| | | | | || || Sbjct 35121 AGACCAACAACGTCTCATTTTCGCCGGAAAACAGCTTGAAGACGGCCGTACACTCGCTGA 35062 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| || || || || ||| |||| || ||| Sbjct 35061 CTACAACATCCAGAAGGAGTCAACACTTCACTTGGTG 35025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429699745868640