Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq14446 102 7e-17
seq13853 96.9 3e-15
seq15753 87.8 2e-12
seq13717 86.0 5e-12
>seq14446
Length=62709
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || |||||||| ||| | |||||| |||| |||||| || |
Sbjct 48042 ATGCAGATTTTCGTGAAGACTTTAACTGGGAAAACCATTACCCTCGAGGTCGAGAGCAGC 47983
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| ||||| || || |||||||| || || || ||
Sbjct 47982 GACACCATCGACAATGTCAAGACTAAGATCCAAGATAAGGAAGGCATCCCACCTGACCAG 47923
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
||||| ||||| | | | | || || ||||| |||| | | || | || || || ||
Sbjct 47922 CAGAGGCTGATCTTTGCCTGGAAACAGCTCGAGGATGGCCG-TACTTTGGCTGACTACAA 47864
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199
|||||| || ||||| || |||| || ||
Sbjct 47863 CATTCAGAAGGAATCCACCCTTCACTTGGT 47834
>seq13853
Length=43806
Score = 96.9 bits (106), Expect = 3e-15
Identities = 144/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| | |||||||| |||||||| | || || ||| | |
Sbjct 19106 ATGCAGATCTTCGTGAAAACGCTGACTGGAAAGACGATTACCCTTGAGGTTGAGAGCTCC 19165
Query 24051 GACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||||||||| | || || || ||| ||| || || || ||||| || || |||||
Sbjct 19166 GACACCATCGACAATGTTAAGACCAAA-ATTCAGGATAAGGAGGGCATTCCCCCAGATCA 19224
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168
||||| ||||||| | ||| |||||||| || |||| | || | || |||||||
Sbjct 19225 GCAGAGGCTGATTTTTGCCGGGAAGCAACTTGAGGATGGTCG-TACTTTGGCTGATTATA 19283
Query 24169 ACATTCAAAAAGAATCTAC 24187
||||||| || || || ||
Sbjct 19284 ACATTCAGAAGGAGTCGAC 19302
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | |||||||| || || || || || | || || |||| || ||| || |
Sbjct 9522 ATGCAGATTTTTGTAAAGACCTTGACGGGGAAGACCATCACTCTCGAGGTTGAGAGCAGC 9581
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| |||||| ||||| || ||||| || || || ||
Sbjct 9582 GACACCATCGACAACGTCAAGACAAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 9641
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | |||||| || || ||||| ||||| |||| | | | ||| ||||||
Sbjct 9642 CAGCGTTTGATTTTCGCAGGAAAGCAGCTCGAGGATGGGCGCACATTGGCCGACTATAAC 9701
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|||||||| || || || | ||| | |||||
Sbjct 9702 ATTCAAAAGGAGTCAACTCTCCATCTGGTGTT 9733
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || || ||||| || | || ||| |||| || ||| || |
Sbjct 19562 ATGCAGATTTTCGTGAAGACCTTGACTGGGAAGACTATCACCCTCGAGGTTGAGAGCAGC 19621
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| |||||| ||||| || ||||| || || || ||
Sbjct 19622 GACACCATCGACAACGTCAAGACAAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 19681
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | |||||| || || ||||| ||||| |||| | | | ||| ||||||
Sbjct 19682 CAGCGTTTGATTTTCGCAGGAAAGCAGCTCGAGGATGGGCGCACATTGGCCGACTATAAC 19741
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|||||||| || || || | ||| | |||||
Sbjct 19742 ATTCAAAAGGAGTCAACTCTCCATCTGGTGTT 19773
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || || || ||||| |||| || | || || ||| |
Sbjct 19334 ATGCAAATCTTCGTGAAGACTTTGACAGGAAAGACGATCACTCTAGAGGTGGAGAGCTCG 19393
Query 24051 GACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|||||||| || | ||||| |||||| ||| ||||| || || || || || || ||
Sbjct 19394 GACACCATTGACAACGTCAAGACAAAA-ATTCAGGACAAGGAGGGTATCCCCCCAGACCA 19452
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168
||||||| |||| | | || ||||| ||||| || | | | ||| || || || |
Sbjct 19453 ACAGAGATTGATATTTGCTGGAAAGCAGCTCGAGGACGGTCGTA-CGTTGGCCGACTACA 19511
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|||||||||| ||||| || | ||| | |||||
Sbjct 19512 ACATTCAAAAGGAATCGACCCTCCATCTGGTGTT 19545
>seq15753
Length=130878
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 24009 ACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTC 24068
|| || || ||||| |||| || | || || ||| | |||||||| || | |||
Sbjct 124132 ACTTTGACAGGAAAGACGATCACGCTAGAGGTGGAGAGCTCGGACACCATTGACAACGTC 124073
Query 24069 AA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGG 24127
|| |||||| ||| | ||||| | || || ||||| || ||||||||| |||| | |
Sbjct 124072 AAGACAAAA-ATTCCGGACAAGGGGGGTATCCCTCCAGACCAACAGAGATTGATATTTGC 124014
Query 24128 CGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTA 24186
|| ||||| |||||||| | | | ||| || || || ||||||||||| ||||| |
Sbjct 124013 TGGAAAGCAGCTCGAAGACGGTCGTA-CGTTGGCCGACTACAACATTCAAAAGGAATCGA 123955
Query 24187 CAATTCATTTAGTGTT 24202
| | ||||| |||||
Sbjct 123954 CCCTCCATTTGGTGTT 123939
>seq13717
Length=68558
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043
||| |||||||| | || || ||||| |||| || || |||| ||| | || || ||
Sbjct 35241 AAAAAAAATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTAGAGGTTGA 35182
Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103
|| ||||||||||| | || ||| ||||| ||||| |||||||| || ||
Sbjct 35181 ATCCTCAGACACCATCGACAATGTGAAAACCAAGATCCAAGACAAGGAAGGCATTCCACC 35122
Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163
|| ||||| | || |||| || ||| || || || ||||| | | | | || ||
Sbjct 35121 AGACCAACAACGTCTCATTTTCGCCGGAAAACAGCTTGAAGACGGCCGTACACTCGCTGA 35062
Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| ||||| || || || || ||| |||| || |||
Sbjct 35061 CTACAACATCCAGAAGGAGTCAACACTTCACTTGGTG 35025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429699745868640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |