Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq13853 91.5 1e-13 >seq13853 Length=43806 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || |||||||| || ||||| || |||||| | || ||| | | Sbjct 19106 ATGCAGATCTTCGTGAAAACGCTGACTGGAAAGACGATTACCCTTGAGGTTGAGAGCTCC 19165 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || || |||||| ||||| || ||| | ||| ||||| Sbjct 19166 GACACCATCG-ACAATGTTAAGACCAAAATTCAGGATAAGGAGGGCATTCCCCCAGATCA 19224 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || |||| ||| || || ||| | || |||| || |||| |||||||| Sbjct 19225 GCAGAGGCTGATTTTTGCCGGGAAGCAACTTGAGGATGGTCGTACTTTGGCTGATTATAA 19284 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||||| || ||||| ||| | || |||| ||| Sbjct 19285 CATTCAGAAGGAGTCGACTTTGCACTTGGTCTTG 19318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425110269218560