Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq44944 129 5e-25
seq14479 120 2e-22
seq13853 104 2e-17
seq44327 87.8 1e-12
seq15654 87.8 1e-12
seq15779 84.2 2e-11
>seq44944
Length=25146
Score = 129 bits (142), Expect = 5e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766
|||| || || || | || || | || || || |||||||| || || ||||||||||
Sbjct 20324 ACCCACCACGAAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCGG 20383
Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826
||| ||| |||||||||| || || |||||| |||| |||| ||| |||||| |
Sbjct 20384 CCAAGGTGCGACCGTCCTCCAACTGCTTCCCCGCAAAAATCAGCCTCTGCTGGTCCGGTG 20443
Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| | |||||| ||||| || | |||||| | | | | ||||||| | ||||
Sbjct 20444 GGATGCCCTCCTTGTCCTGGATCTTAGTCTTCACATTGTCGATCGTGTCGCTGCTCTCCA 20503
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| |||||| || || ||||||| ||| || ||||| ||||||||
Sbjct 20504 CTTCCAGGGTGATCGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 20552
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786
|||| ||| || || |||||||| || |||||||||||||||| ||| | |||||
Sbjct 20572 ACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCATCCTCG 20631
Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCA 16846
| || || |||||| | ||||||| ||| |||||| || | || || ||||| |
Sbjct 20632 AGCTGCTTTCCCGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGA 20691
Query 16847 ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTT 16906
|| | | ||| || | | | | ||||||| | ||| || | ||| ||||| ||
Sbjct 20692 ATCTTCGTCTTAACGTTGTCAATCGTGTCGCTGCTCTCAACCTCAAGGGTAATGGTCTTG 20751
Query 16907 CCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| |||| || || || || ||||||||
Sbjct 20752 CCAGTCAAGGTCTTAACGAAGATCTGCAT 20780
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||||||||| || |||||||||||||| | || | | |||
Sbjct 21025 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCC 21084
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | ||| || || ||| | || || || || ||||| || | |||||| |||||
Sbjct 21085 TCGAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 21144
Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902
| | |||| | ||| || | | | | ||||| ||| || | |||||||||
Sbjct 21145 TGGATTTTGGT-CTTGACGTTGTCGATTGTGTCAGAACTCTCTACCTCGAGGGTGATGGT 21203
Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| ||||||| || ||||| || ||||||||
Sbjct 21204 CTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 21236
>seq14479
Length=56811
Score = 120 bits (132), Expect = 2e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766
|||| || || || | || || | || || || |||||||| || || ||||||||||
Sbjct 50456 ACCCACCACGAAGACGGAGGACAAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGG 50515
Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826
||| ||| |||||||||| || || || ||| | || |||| ||| |||||| |
Sbjct 50516 CCAAGGTGCGACCGTCCTCCAACTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGG 50575
Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| | |||||| ||||| || | |||||| | | | | ||||||| | ||||
Sbjct 50576 GGATGCCCTCCTTGTCCTGGATCTTAGTCTTCACATTGTCGATCGTGTCGCTGCTCTCCA 50635
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| |||||| || || ||||||| ||| || ||||| ||||||||
Sbjct 50636 CTTCCAGGGTGATCGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 50684
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786
|||| ||| || || |||||||| || |||||||||||||||| ||| | |||||
Sbjct 50704 ACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCATCCTCG 50763
Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCA 16846
| || || |||||| | ||||||| ||| |||||| || | || || ||||| |
Sbjct 50764 AGCTGCTTTCCCGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGA 50823
Query 16847 ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTT 16906
|| | | ||| || | | | | ||||||| | ||| || | ||| ||||| ||
Sbjct 50824 ATCTTCGTCTTAACGTTGTCAATCGTGTCGCTGCTCTCAACCTCAAGGGTAATGGTCTTG 50883
Query 16907 CCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| |||| || || || || ||||||||
Sbjct 50884 CCAGTCAAGGTCTTAACGAAGATCTGCAT 50912
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||||||||| || |||||||||||||| | || | | |||
Sbjct 51157 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCC 51216
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | ||| || || ||| | || || || || ||||| || | |||||| |||||
Sbjct 51217 TCGAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 51276
Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902
| | |||| | ||| || | | | | ||||| ||| || | |||||||||
Sbjct 51277 TGGATTTTGGT-CTTGACGTTGTCGATTGTGTCAGAACTCTCGACCTCGAGGGTGATGGT 51335
Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| ||||||| || ||||| || ||||||||
Sbjct 51336 CTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 51368
>seq13853
Length=43806
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || || |||||||| || || ||||||||||||| || | |||| |||| |||
Sbjct 19992 TGGAGGGTCGACTCCTTCTGAATATTGTAGTCGGCCAGAGTACGGCCGTCTTCCATTTGC 19933
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT-TTG 16851
|| || ||| | || | || ||||||||| || | ||||| ||||| || |||
Sbjct 19932 TTCCCTGCAAATATCAACCTTTGTTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTG 19873
Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911
| |||||| | | | | ||||| | | |||| |||| ||||||||| ||||| ||
Sbjct 19872 GT-CTTCACATTGTCGATCGTGTCACTGCTCTCCACCTCCAGGGTGATGGTCTTTCCTGT 19814
Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935
|| ||| || || |||||||||||
Sbjct 19813 CAACGTCTTCACGAAAATCTGCAT 19790
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || || |||||||| || || ||||||||||||| || | |||| |||| ||
Sbjct 9952 TGGAGGGTCGACTCCTTCTGAATATTGTAGTCGGCCAGAGTACGGCCGTCTTCCATCTGC 9893
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT-CGGCAATTTG 16851
|| || ||| | || | || ||||||||| || | ||||| |||| | | | |||
Sbjct 9892 TTCCCTGCAAATATCAACCTTTGTTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTG 9833
Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911
| |||||| | | | | ||||| | | |||| |||| ||||||||| ||||| ||
Sbjct 9832 GT-CTTCACATTGTCGATCGTGTCACTGCTCTCCACCTCCAGGGTGATGGTCTTTCCTGT 9774
Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935
|| ||| || || ||||| |||||
Sbjct 9773 CAACGTCTTCACGAAAATTTGCAT 9750
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || |||| | || |||| ||| || || ||||||||||| ||||| |||||||||
Sbjct 9748 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 9689
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | ||||| | || || || || |||| | ||||| |||||| ||
Sbjct 9688 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 9629
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| ||||| || |||| ||| || | | | | ||||||| | |||
Sbjct 9628 ATGCCCTCCTTGTCCTGGATCTTTG--TCTTGACGTTGTCGATGGTGTCGCTGCTCTCAA 9571
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||||| || || |||| || || ||||||||||||||
Sbjct 9570 CCTCGAGAGTGATGGTCTTCCCCGTCAAGGTCTTTACAAAAATCTGCAT 9522
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || |||| | || |||| ||| || || ||||||||||| ||||| |||||||||
Sbjct 19788 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 19729
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | ||||| | || || || || |||| | ||||| |||||| ||
Sbjct 19728 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 19669
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| ||||| || |||| ||| || | | | | ||||||| | |||
Sbjct 19668 ATGCCCTCCTTGTCCTGGATCTTTG--TCTTGACGTTGTCGATGGTGTCGCTGCTCTCAA 19611
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||| || || || |||| || || || |||||||||||
Sbjct 19610 CCTCGAGGGTGATAGTCTTCCCAGTCAAGGTCTTCACGAAAATCTGCAT 19562
>seq44327
Length=9034
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| || || || | || |||| |||| || ||||||||||| || |||||||| ||
Sbjct 7826 CCCACCACGGAGACGCAACACCAAGTGCAAAGTAGACTCCTTTTGGATATTGTAGTCCGC 7767
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| || ||||||| | ||||| || ||| | || || | ||| ||||| ||
Sbjct 7766 CAACGTACGACCGTCCTCGAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGG 7707
Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887
| |||||| ||||| || | | |||||| | | | | ||||||| | ||
Sbjct 7706 GATGCCCTCCTTGTCCTGGATCTTCGTCTTCACATTGTCGATCGTGTCGCTGCTTTCAAC 7647
Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || || |||| || || || |||||||||||
Sbjct 7646 CTCAAGGGTGATGGTCTTCCCAGTCAAAGTCTTTACGAAAATCTGCAT 7599
>seq15654
Length=163759
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| || || || | || |||| |||| || ||||||||||| || |||||||| ||
Sbjct 112470 CCCACCACGGAGACGCAACACCAAGTGCAAAGTAGACTCCTTTTGGATATTGTAGTCCGC 112411
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| || ||||||| | ||||| || ||| | || || | ||| ||||| ||
Sbjct 112410 CAACGTACGACCGTCCTCGAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGG 112351
Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887
| |||||| ||||| || | | |||||| | | | | ||||||| | ||
Sbjct 112350 GATGCCCTCCTTGTCCTGGATCTTCGTCTTCACATTGTCGATCGTGTCGCTGCTTTCAAC 112291
Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || || |||| || || || |||||||||||
Sbjct 112290 CTCAAGGGTGATGGTCTTCCCAGTCAAAGTCTTTACGAAAATCTGCAT 112243
>seq15779
Length=145502
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || |||||||| || ||||||||||| || | || | |||
Sbjct 122595 AGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCTAAAGTGCGCCCATCC 122536
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | ||||| |||||| | || |||| ||| ||||| ||| | |||||||||||
Sbjct 122535 TCAAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCCTCTTTGTCC 122476
Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902
||| ||| | |||||| | | | | ||||| | | ||| || | |||||| ||
Sbjct 122475 TGAATCTTGGT-CTTCACATTGTCGATGGTGTCACTGCTCTCAACCTCAAGGGTGATAGT 122417
Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || |||| || || ||||| || |||||
Sbjct 122416 CTTGCCCGTCAAAGTCTTCACAAAGATTTGCAT 122384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404865400093120
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