Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq44944 129 5e-25 seq14479 120 2e-22 seq13853 104 2e-17 seq44327 87.8 1e-12 seq15654 87.8 1e-12 seq15779 84.2 2e-11 >seq44944 Length=25146 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 |||| || || || | || || | || || || |||||||| || || |||||||||| Sbjct 20324 ACCCACCACGAAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCGG 20383 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 ||| ||| |||||||||| || || |||||| |||| |||| ||| |||||| | Sbjct 20384 CCAAGGTGCGACCGTCCTCCAACTGCTTCCCCGCAAAAATCAGCCTCTGCTGGTCCGGTG 20443 Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | | |||||| ||||| || | |||||| | | | | ||||||| | |||| Sbjct 20444 GGATGCCCTCCTTGTCCTGGATCTTAGTCTTCACATTGTCGATCGTGTCGCTGCTCTCCA 20503 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||| || || ||||||| ||| || ||||| |||||||| Sbjct 20504 CTTCCAGGGTGATCGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 20552 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| ||| || || |||||||| || |||||||||||||||| ||| | ||||| Sbjct 20572 ACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCATCCTCG 20631 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCA 16846 | || || |||||| | ||||||| ||| |||||| || | || || ||||| | Sbjct 20632 AGCTGCTTTCCCGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGA 20691 Query 16847 ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTT 16906 || | | ||| || | | | | ||||||| | ||| || | ||| ||||| || Sbjct 20692 ATCTTCGTCTTAACGTTGTCAATCGTGTCGCTGCTCTCAACCTCAAGGGTAATGGTCTTG 20751 Query 16907 CCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || |||| || || || || |||||||| Sbjct 20752 CCAGTCAAGGTCTTAACGAAGATCTGCAT 20780 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||||||||| | || | | ||| Sbjct 21025 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCC 21084 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| || || ||| | || || || || ||||| || | |||||| ||||| Sbjct 21085 TCGAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 21144 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | |||| | ||| || | | | | ||||| ||| || | ||||||||| Sbjct 21145 TGGATTTTGGT-CTTGACGTTGTCGATTGTGTCAGAACTCTCTACCTCGAGGGTGATGGT 21203 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| || ||||| || |||||||| Sbjct 21204 CTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 21236 >seq14479 Length=56811 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 |||| || || || | || || | || || || |||||||| || || |||||||||| Sbjct 50456 ACCCACCACGAAGACGGAGGACAAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGG 50515 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 ||| ||| |||||||||| || || || ||| | || |||| ||| |||||| | Sbjct 50516 CCAAGGTGCGACCGTCCTCCAACTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGG 50575 Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | | |||||| ||||| || | |||||| | | | | ||||||| | |||| Sbjct 50576 GGATGCCCTCCTTGTCCTGGATCTTAGTCTTCACATTGTCGATCGTGTCGCTGCTCTCCA 50635 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||| || || ||||||| ||| || ||||| |||||||| Sbjct 50636 CTTCCAGGGTGATCGTCTTGCCGGTCAACGTCTTCACAAAGATCTGCAT 50684 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| ||| || || |||||||| || |||||||||||||||| ||| | ||||| Sbjct 50704 ACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCATCCTCG 50763 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCA 16846 | || || |||||| | ||||||| ||| |||||| || | || || ||||| | Sbjct 50764 AGCTGCTTTCCCGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGA 50823 Query 16847 ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTT 16906 || | | ||| || | | | | ||||||| | ||| || | ||| ||||| || Sbjct 50824 ATCTTCGTCTTAACGTTGTCAATCGTGTCGCTGCTCTCAACCTCAAGGGTAATGGTCTTG 50883 Query 16907 CCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || |||| || || || || |||||||| Sbjct 50884 CCAGTCAAGGTCTTAACGAAGATCTGCAT 50912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||||||||| | || | | ||| Sbjct 51157 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCC 51216 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| || || ||| | || || || || ||||| || | |||||| ||||| Sbjct 51217 TCGAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 51276 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | |||| | ||| || | | | | ||||| ||| || | ||||||||| Sbjct 51277 TGGATTTTGGT-CTTGACGTTGTCGATTGTGTCAGAACTCTCGACCTCGAGGGTGATGGT 51335 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| || ||||| || |||||||| Sbjct 51336 CTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 51368 >seq13853 Length=43806 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || || ||||||||||||| || | |||| |||| ||| Sbjct 19992 TGGAGGGTCGACTCCTTCTGAATATTGTAGTCGGCCAGAGTACGGCCGTCTTCCATTTGC 19933 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT-TTG 16851 || || ||| | || | || ||||||||| || | ||||| ||||| || ||| Sbjct 19932 TTCCCTGCAAATATCAACCTTTGTTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTG 19873 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | |||||| | | | | ||||| | | |||| |||| ||||||||| ||||| || Sbjct 19872 GT-CTTCACATTGTCGATCGTGTCACTGCTCTCCACCTCCAGGGTGATGGTCTTTCCTGT 19814 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 || ||| || || ||||||||||| Sbjct 19813 CAACGTCTTCACGAAAATCTGCAT 19790 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || || ||||||||||||| || | |||| |||| || Sbjct 9952 TGGAGGGTCGACTCCTTCTGAATATTGTAGTCGGCCAGAGTACGGCCGTCTTCCATCTGC 9893 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT-CGGCAATTTG 16851 || || ||| | || | || ||||||||| || | ||||| |||| | | | ||| Sbjct 9892 TTCCCTGCAAATATCAACCTTTGTTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTG 9833 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | |||||| | | | | ||||| | | |||| |||| ||||||||| ||||| || Sbjct 9832 GT-CTTCACATTGTCGATCGTGTCACTGCTCTCCACCTCCAGGGTGATGGTCTTTCCTGT 9774 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 || ||| || || ||||| ||||| Sbjct 9773 CAACGTCTTCACGAAAATTTGCAT 9750 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || |||| | || |||| ||| || || ||||||||||| ||||| ||||||||| Sbjct 9748 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 9689 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | || || || || |||| | ||||| |||||| || Sbjct 9688 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 9629 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || |||| ||| || | | | | ||||||| | ||| Sbjct 9628 ATGCCCTCCTTGTCCTGGATCTTTG--TCTTGACGTTGTCGATGGTGTCGCTGCTCTCAA 9571 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || |||| || || |||||||||||||| Sbjct 9570 CCTCGAGAGTGATGGTCTTCCCCGTCAAGGTCTTTACAAAAATCTGCAT 9522 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || |||| | || |||| ||| || || ||||||||||| ||||| ||||||||| Sbjct 19788 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 19729 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | || || || || |||| | ||||| |||||| || Sbjct 19728 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 19669 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || |||| ||| || | | | | ||||||| | ||| Sbjct 19668 ATGCCCTCCTTGTCCTGGATCTTTG--TCTTGACGTTGTCGATGGTGTCGCTGCTCTCAA 19611 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || || |||| || || || ||||||||||| Sbjct 19610 CCTCGAGGGTGATAGTCTTCCCAGTCAAGGTCTTCACGAAAATCTGCAT 19562 >seq44327 Length=9034 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| |||| || ||||||||||| || |||||||| || Sbjct 7826 CCCACCACGGAGACGCAACACCAAGTGCAAAGTAGACTCCTTTTGGATATTGTAGTCCGC 7767 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || ||||||| | ||||| || ||| | || || | ||| ||||| || Sbjct 7766 CAACGTACGACCGTCCTCGAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGG 7707 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| ||||| || | | |||||| | | | | ||||||| | || Sbjct 7706 GATGCCCTCCTTGTCCTGGATCTTCGTCTTCACATTGTCGATCGTGTCGCTGCTTTCAAC 7647 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || |||| || || || ||||||||||| Sbjct 7646 CTCAAGGGTGATGGTCTTCCCAGTCAAAGTCTTTACGAAAATCTGCAT 7599 >seq15654 Length=163759 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| |||| || ||||||||||| || |||||||| || Sbjct 112470 CCCACCACGGAGACGCAACACCAAGTGCAAAGTAGACTCCTTTTGGATATTGTAGTCCGC 112411 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || ||||||| | ||||| || ||| | || || | ||| ||||| || Sbjct 112410 CAACGTACGACCGTCCTCGAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGTGG 112351 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| ||||| || | | |||||| | | | | ||||||| | || Sbjct 112350 GATGCCCTCCTTGTCCTGGATCTTCGTCTTCACATTGTCGATCGTGTCGCTGCTTTCAAC 112291 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || |||| || || || ||||||||||| Sbjct 112290 CTCAAGGGTGATGGTCTTCCCAGTCAAAGTCTTTACGAAAATCTGCAT 112243 >seq15779 Length=145502 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||| || | || | ||| Sbjct 122595 AGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCTAAAGTGCGCCCATCC 122536 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| |||||| | || |||| ||| ||||| ||| | ||||||||||| Sbjct 122535 TCAAGCTGTTTCCCCGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCCTCTTTGTCC 122476 Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||| ||| | |||||| | | | | ||||| | | ||| || | |||||| || Sbjct 122475 TGAATCTTGGT-CTTCACATTGTCGATGGTGTCACTGCTCTCAACCTCAAGGGTGATAGT 122417 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||| || || ||||| || ||||| Sbjct 122416 CTTGCCCGTCAAAGTCTTCACAAAGATTTGCAT 122384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404865400093120