Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 143 3e-29
seq15946 140 4e-28
seq11586 140 4e-28
seq16162 95.1 2e-14
seq16271 91.5 2e-13
>seq16048
Length=246288
Score = 143 bits (158), Expect = 3e-29
Identities = 394/589 (67%), Gaps = 21/589 (4%)
Strand=Plus/Minus
Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719
||| || || |||||||| ||||||||||| | | ||| | ||| || || || || |
Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455
Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGA 32778
|| ||||| || |||||||||||||||||||| || | |||| | ||| ||||||||
Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 204396
Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATG 32836
| || || || || |||||| || |||| ||||| || | || | | | |||
Sbjct 204395 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATC 204338
Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896
||||| |||||||| |||||||| || || ||| || ||||| | ||||
Sbjct 204337 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 204278
Query 32897 AAAGAGATAGtttttttCATT-ACTA-TCTTTAACATATGTATCAATCAAAAGACTATAC 32954
||| | || | |||| || | || | || ||| || |||| |||||| |||
Sbjct 204277 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 204220
Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGT 33013
|| ||||||||||| || ||||| || || ||||| ||||| || ||| | || ||||
Sbjct 204219 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCA-CGCGCTTCGGG 204161
Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073
| ||| | || | || || || | || || || || || ||| ||
Sbjct 204160 GAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGC 204101
Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGT---GTTAGTTT 33127
||||| || || | || || | || |||| || ||||| ||| | | |||
Sbjct 204100 GGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTC-GGTCAAGGTCGTTG 204042
Query 33128 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187
| ||| | | | |||| || | ||| |||||||| | |||||||| ||||| ||
Sbjct 204041 A--CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTC 203984
Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236
|| || || ||||| | |||||| | | || |||||||| || |||
Sbjct 203983 GGCTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 203935
>seq15946
Length=172941
Score = 140 bits (154), Expect = 4e-28
Identities = 393/589 (67%), Gaps = 21/589 (4%)
Strand=Plus/Minus
Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719
||| || || |||||||| ||||||||||| | | ||| | ||| || || || || |
Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520
Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGA 32778
|| ||||| || |||||||||||||||||||| || | |||| | ||| ||||||||
Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 58461
Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATG 32836
| || || || || |||||| || |||| ||||| || | || | | | |||
Sbjct 58460 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATC 58403
Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896
||||| |||||||| |||||||| || || ||| || ||||| | ||||
Sbjct 58402 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 58343
Query 32897 AAAGAGATAGtttttttCATT-ACTA-TCTTTAACATATGTATCAATCAAAAGACTATAC 32954
||| | || | |||| || | || | || ||| || |||| |||||| |||
Sbjct 58342 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 58285
Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGT 33013
|| ||||||||||| || ||||| || || ||||| ||||| || ||| | || ||||
Sbjct 58284 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCA-CGCGCTTCGGG 58226
Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073
| ||| | || | || || || | || || || || || ||| ||
Sbjct 58225 GAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGC 58166
Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGT---GTTAGTTT 33127
||||| || || | || || | || |||| || | ||| ||| | | |||
Sbjct 58165 GGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTC-GGTCAAGGTCGTTG 58107
Query 33128 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187
| ||| | | | |||| || | ||| |||||||| | |||||||| ||||| ||
Sbjct 58106 A--CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTC 58049
Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236
|| || || ||||| | |||||| | | || |||||||| || |||
Sbjct 58048 GGCTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 58000
>seq11586
Length=26096
Score = 140 bits (154), Expect = 4e-28
Identities = 393/589 (67%), Gaps = 21/589 (4%)
Strand=Plus/Minus
Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719
||| || || |||||||| ||||||||||| | | ||| | ||| || || || || |
Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278
Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGA 32778
|| ||||| || |||||||||||||||||||| || | |||| | ||| ||||||||
Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 4219
Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATG 32836
| || || || || |||||| || |||| ||||| || | || | | | |||
Sbjct 4218 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATC 4161
Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896
||||| |||||||| |||||||| || || ||| || ||||| | ||||
Sbjct 4160 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 4101
Query 32897 AAAGAGATAGtttttttCATT-ACTA-TCTTTAACATATGTATCAATCAAAAGACTATAC 32954
||| | || | |||| || | || | || ||| || |||| |||||| |||
Sbjct 4100 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 4043
Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGT 33013
|| ||||||||||| || ||||| || || ||||| ||||| || ||| | || ||||
Sbjct 4042 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCA-CGCGCTTCGGG 3984
Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073
| ||| | || | || || || | || || || || || ||| ||
Sbjct 3983 GAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGC 3924
Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGT---GTTAGTTT 33127
||||| || || | || || | || |||| || | ||| ||| | | |||
Sbjct 3923 GGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTC-GGTCAAGGTCGTTG 3865
Query 33128 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187
| ||| | | | |||| || | ||| |||||||| | |||||||| ||||| ||
Sbjct 3864 A--CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTC 3807
Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236
|| || || ||||| | |||||| | | || |||||||| || |||
Sbjct 3806 GGCTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 3758
>seq16162
Length=245457
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526
|| || ||||| || | ||| || ||||| ||||| ||||| | | ||| | | || |
Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873
Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586
|| || | || || || || ||||| | ||| || || ||||| || | ||| |||
Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813
Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646
|| |||||||| || || || | ||| | | ||||||| || ||| | || |
Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753
Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
||||| ||||||||||| | || |||||| || |||||||| ||
Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706
>seq16271
Length=354655
Score = 91.5 bits (100), Expect = 2e-13
Identities = 143/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285
|||||| ||||| | |||| |||||||| ||| | || | || ||| ||| |||| ||
Sbjct 278735 TCCTCCTTGATCAACATATCGAGCGGTGTCATTGAACACCCGCAGCATCGGAGTAATGCC 278794
Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345
||| |||| ||||| || || || || || || ||||||||||||| ||| ||
Sbjct 278795 ATTTGATGCTCCATTTGTGCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAATAGA 278854
Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405
| ||| || || || || |||| || | || ||| || || ||||| || ||
Sbjct 278855 GACACCAATACCTCCAGCAGATTTACTTATAACAGCACATTCCTTCAATGTATCGTAAAT 278914
Query 63406 GCCCTCTATACTATCATCCATCATG 63430
|||||| || || || || |||||
Sbjct 278915 GCCCTCGATGCTGTCCTCTTTCATG 278939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633274885004800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |