Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq16048 143 3e-29 seq15946 140 4e-28 seq11586 140 4e-28 seq16162 95.1 2e-14 seq16271 91.5 2e-13 >seq16048 Length=246288 Score = 143 bits (158), Expect = 3e-29 Identities = 394/589 (67%), Gaps = 21/589 (4%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || || |||||||| ||||||||||| | | ||| | ||| || || || || | Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGA 32778 || ||||| || |||||||||||||||||||| || | |||| | ||| |||||||| Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 204396 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATG 32836 | || || || || |||||| || |||| ||||| || | || | | | ||| Sbjct 204395 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATC 204338 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| |||||||| |||||||| || || ||| || ||||| | |||| Sbjct 204337 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 204278 Query 32897 AAAGAGATAGtttttttCATT-ACTA-TCTTTAACATATGTATCAATCAAAAGACTATAC 32954 ||| | || | |||| || | || | || ||| || |||| |||||| ||| Sbjct 204277 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 204220 Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGT 33013 || ||||||||||| || ||||| || || ||||| ||||| || ||| | || |||| Sbjct 204219 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCA-CGCGCTTCGGG 204161 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | ||| | || | || || || | || || || || || ||| || Sbjct 204160 GAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGC 204101 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGT---GTTAGTTT 33127 ||||| || || | || || | || |||| || ||||| ||| | | ||| Sbjct 204100 GGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTC-GGTCAAGGTCGTTG 204042 Query 33128 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187 | ||| | | | |||| || | ||| |||||||| | |||||||| ||||| || Sbjct 204041 A--CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTC 203984 Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 || || || ||||| | |||||| | | || |||||||| || ||| Sbjct 203983 GGCTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 203935 >seq15946 Length=172941 Score = 140 bits (154), Expect = 4e-28 Identities = 393/589 (67%), Gaps = 21/589 (4%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || || |||||||| ||||||||||| | | ||| | ||| || || || || | Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGA 32778 || ||||| || |||||||||||||||||||| || | |||| | ||| |||||||| Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 58461 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATG 32836 | || || || || |||||| || |||| ||||| || | || | | | ||| Sbjct 58460 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATC 58403 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| |||||||| |||||||| || || ||| || ||||| | |||| Sbjct 58402 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 58343 Query 32897 AAAGAGATAGtttttttCATT-ACTA-TCTTTAACATATGTATCAATCAAAAGACTATAC 32954 ||| | || | |||| || | || | || ||| || |||| |||||| ||| Sbjct 58342 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 58285 Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGT 33013 || ||||||||||| || ||||| || || ||||| ||||| || ||| | || |||| Sbjct 58284 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCA-CGCGCTTCGGG 58226 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | ||| | || | || || || | || || || || || ||| || Sbjct 58225 GAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGC 58166 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGT---GTTAGTTT 33127 ||||| || || | || || | || |||| || | ||| ||| | | ||| Sbjct 58165 GGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTC-GGTCAAGGTCGTTG 58107 Query 33128 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187 | ||| | | | |||| || | ||| |||||||| | |||||||| ||||| || Sbjct 58106 A--CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTC 58049 Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 || || || ||||| | |||||| | | || |||||||| || ||| Sbjct 58048 GGCTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 58000 >seq11586 Length=26096 Score = 140 bits (154), Expect = 4e-28 Identities = 393/589 (67%), Gaps = 21/589 (4%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || || |||||||| ||||||||||| | | ||| | ||| || || || || | Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGA 32778 || ||||| || |||||||||||||||||||| || | |||| | ||| |||||||| Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGA 4219 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATG 32836 | || || || || |||||| || |||| ||||| || | || | | | ||| Sbjct 4218 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA--CGTCTCAGAACCATC 4161 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| |||||||| |||||||| || || ||| || ||||| | |||| Sbjct 4160 AATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCACG 4101 Query 32897 AAAGAGATAGtttttttCATT-ACTA-TCTTTAACATATGTATCAATCAAAAGACTATAC 32954 ||| | || | |||| || | || | || ||| || |||| |||||| ||| Sbjct 4100 AAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTAC 4043 Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGT 33013 || ||||||||||| || ||||| || || ||||| ||||| || ||| | || |||| Sbjct 4042 ATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCA-CGCGCTTCGGG 3984 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | ||| | || | || || || | || || || || || ||| || Sbjct 3983 GAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGC 3924 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCTGGT---GTTAGTTT 33127 ||||| || || | || || | || |||| || | ||| ||| | | ||| Sbjct 3923 GGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTC-GGTCAAGGTCGTTG 3865 Query 33128 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187 | ||| | | | |||| || | ||| |||||||| | |||||||| ||||| || Sbjct 3864 A--CCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTC 3807 Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 || || || ||||| | |||||| | | || |||||||| || ||| Sbjct 3806 GGCTTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACATA 3758 >seq16162 Length=245457 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | ||| || ||||| ||||| ||||| | | ||| | | || | Sbjct 40932 GTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAACCACCTCTGAGACATGAAATGG 40873 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || | || || || || ||||| | ||| || || ||||| || | ||| ||| Sbjct 40872 TATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGCAACTCTCATCAAC 40813 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 || |||||||| || || || | ||| | | ||||||| || ||| | || | Sbjct 40812 ATATGCTGAGGCCTCTCCACAACCTTTCCACTAACCTTCAACAGATACGATCTCTCGAGG 40753 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| ||||||||||| | || |||||| || |||||||| || Sbjct 40752 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGGTCGTAAATGAT 40706 >seq16271 Length=354655 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | |||| |||||||| ||| | || | || ||| ||| |||| || Sbjct 278735 TCCTCCTTGATCAACATATCGAGCGGTGTCATTGAACACCCGCAGCATCGGAGTAATGCC 278794 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| |||| ||||| || || || || || || ||||||||||||| ||| || Sbjct 278795 ATTTGATGCTCCATTTGTGCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAATAGA 278854 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || || |||| || | || ||| || || ||||| || || Sbjct 278855 GACACCAATACCTCCAGCAGATTTACTTATAACAGCACATTCCTTCAATGTATCGTAAAT 278914 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 |||||| || || || || ||||| Sbjct 278915 GCCCTCGATGCTGTCCTCTTTCATG 278939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633274885004800