Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_008296.2
Length=177300
Score E
Sequences producing significant alignments: (Bits) Value
seq11475 533 2e-146
seq15224 246 3e-60
seq10333 152 6e-32
seq15824 138 1e-27
seq12771 107 2e-18
seq15982 105 8e-18
>seq11475
Length=22225
Score = 533 bits (590), Expect = 2e-146
Identities = 728/1014 (72%), Gaps = 2/1014 (0%)
Strand=Plus/Minus
Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359
|||||| | ||||||||||| | | ||||| || || ||||| || ||||||||
Sbjct 12883 TTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 12824
Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419
|| | || ||||| ||||||| | || | || || ||| |||| || |||||||||
Sbjct 12823 CTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTTT 12764
Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGG-TGCTAATTTTCT 167478
|| || |||||||| || |||||||| | || | || || ||| ||||| |
Sbjct 12763 GTAACTTCATGGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGC-AATTTCTT 12705
Query 167479 CACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 167538
|| ||||| || || ||||||||| | | | | || ||| | | | || |||||
Sbjct 12704 AACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGGG 12645
Query 167539 TCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGT 167598
|||||| | || || ||||| | | ||||| || | || || || ||| |||||||
Sbjct 12644 TCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGT 12585
Query 167599 GGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAG 167658
|| || || || || || | || ||||| |||||| | || ||||| || | | |
Sbjct 12584 TGCTCTTCATGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCG 12525
Query 167659 ACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGT 167718
| || | || ||||| ||||| || || || || || || |||||||| |||||
Sbjct 12524 ATCTGTTCAATTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGT 12465
Query 167719 GTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGG 167778
||||| || || || ||||| || || || || ||||||||||||| || |||||
Sbjct 12464 TTCTGTATTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 12405
Query 167779 TGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAA 167838
||| ||||| || ||| ||||| | || || | || || || ||||| |||||||| ||
Sbjct 12404 TGTAGCAGCTATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTGAA 12345
Query 167839 CCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCA 167898
|||||| ||||||||||||||||||||| | | |||| || |||| | || || ||
Sbjct 12344 CCCTTTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCA 12285
Query 167899 TGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGC 167958
||||| ||| ||||| |||||| | | || |||||||| ||||| || ||| ||
Sbjct 12284 TGGTGCTACCGTAGAAAATACTTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGC 12225
Query 167959 ATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTC 168018
||| | | ||||| | || ||||||||||| |||||||| |||||||| || |||||
Sbjct 12224 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTC 12165
Query 168019 TCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGT 168078
||||||||||| ||||||| |||||| |||||||| || ||||||||| | || ||
Sbjct 12164 CCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 12105
Query 168079 TCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCG 168138
|| || | || | |||| ||| || |||| | ||||||| || | || || ||
Sbjct 12104 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACG 12045
Query 168139 TGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTT 168198
||| |||||||| || || || ||| | | ||||| || ||||| || ||||| |||||
Sbjct 12044 TGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAGACTTT 11985
Query 168199 CTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCA 168258
||| || ||||| || ||| | |||||||| | ||||| |||||||| | ||| ||
Sbjct 11984 CTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 11925
Query 168259 ACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312
|| ||||||||| || ||||||| || || || | || | || ||||||||
Sbjct 11924 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 11871
>seq15224
Length=172684
Score = 246 bits (272), Expect = 3e-60
Identities = 299/405 (74%), Gaps = 2/405 (0%)
Strand=Plus/Plus
Query 166441 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 166500
||||| || || || |||||||| || | || || ||| || ||||||| | ||||||
Sbjct 89319 GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCAA 89378
Query 166501 GGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTC 166560
|| || ||||| | ||||| | || || ||| || ||||||| |||| ||||
Sbjct 89379 GGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGTA 89438
Query 166561 TTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTA 166620
||||| || |||||||||||||| |||||||| || || ||| |||||||||| ||||||
Sbjct 89439 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTA 89498
Query 166621 TTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCCG 166679
||||| || || || || || ||||| || | || |||| || | | | | |
Sbjct 89499 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTT-CTAGTTTGATTAG 89557
Query 166680 TGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 166739
|| ||||| |||| ||| ||| || | ||||||| ||||||||||| ||||| ||
Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617
Query 166740 CTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 166799
|| || ||||| |||||||||| ||| || ||||| ||||||||||||| ||| ||
Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677
Query 166800 CAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGT 166844
|||||| || || || | ||||||||| | || || ||||| ||
Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722
Score = 158 bits (174), Expect = 1e-33
Identities = 144/182 (79%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 166711 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTC 166770
||||||| ||||||||||| ||||| || || || ||||| |||||||||||||| ||
Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793
Query 166771 GGTCGCCTGATCTTCCAATAC------GCTTCCTTCAACAACTCTCGCTCGCTGCACTTC 166824
||||| ||||||||||||| ||| |||||||| ||||| || | ||||||
Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853
Query 166825 TTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATG 166884
||| | || || ||||| || |||||||| |||||||||||| | ||| ||||||| |||
Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913
Query 166885 GC 166886
||
Sbjct 89914 GC 89915
Score = 109 bits (120), Expect = 6e-19
Identities = 128/171 (75%), Gaps = 4/171 (2%)
Strand=Plus/Plus
Query 166171 CCTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAAC 166230
|| || ||| |||| |||||||| ||||| || || | || |||||| | || || |||
Sbjct 89144 CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAAC 89203
Query 166231 AACATCATCTCTGGTGCTGTTGTCCC--CTCCTCCAACGCAATTGGTCTTCACTTCTATC 166288
|| || || |||||||| || | || || || || || || || | || || ||||
Sbjct 89204 AATATTATTTCTGGTGCCATTATTCCTACTTCTGCA--GCTATAGGGTTGCATTTTTATC 89261
Query 166289 CCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTT 166339
| || |||||||||||||| ||||||| ||| | ||||| ||||||||||
Sbjct 89262 CAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312
>seq10333
Length=16991
Score = 152 bits (168), Expect = 6e-32
Identities = 185/252 (73%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 167860 TGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATAC 167919
||||||| | | |||| || |||| | || || ||||||| ||| ||||| |||||
Sbjct 6646 TGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATAC 6705
Query 167920 TCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGA 167979
| | | || |||||||| ||||| || ||| || ||| | | ||||| | ||
Sbjct 6706 TTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGA 6765
Query 167980 GGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTT 168039
||||||||||| |||||||| |||||||| || ||||| ||||||||||| |||||||
Sbjct 6766 AGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTT 6825
Query 168040 CAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGAC 168099
|||||| |||||||| || ||||||||| | || || || || | || | ||||
Sbjct 6826 TTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACAGGTTTATGGAT 6885
Query 168100 AAGTTCTATTGG 168111
||| || ||||
Sbjct 6886 GAGTGCTCTTGG 6897
>seq15824
Length=139560
Score = 138 bits (152), Expect = 1e-27
Identities = 142/186 (76%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 167672 CGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTC 167731
|| ||||| ||||| || || || || || || |||||||| ||||| ||||| || ||
Sbjct 61301 CGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTA 61242
Query 167732 ATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATA 167791
|| ||||| || | || || ||||||||||||| || |||||||| ||||| ||
Sbjct 61241 ATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATT 61182
Query 167792 TTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATG 167851
||| ||||| | ||||| | || || || ||||| ||||||| ||| |||| ||||||
Sbjct 61181 TTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACGCAGAACTCTTTTCATATG 61122
Query 167852 ATGGGA 167857
||||||
Sbjct 61121 ATGGGA 61116
>seq12771
Length=31889
Score = 107 bits (118), Expect = 2e-18
Identities = 140/191 (73%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 167672 CGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTC 167731
|| ||||| ||||| || || || || || | |||| ||| ||||| ||||| || ||
Sbjct 8558 CGCCCTTATAATGCAATAGCATTCTCGGGCCAAATTGTTGTTTTTGTTTCTGTATTCCTA 8499
Query 167732 ATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGG----TGTTGCAGC 167787
|| ||||| || | || || ||||||||||||| || ||||| ||| ||| |
Sbjct 8498 ATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTATGTAGCAAC 8439
Query 167788 GATATTTAGATTCCTACTATTCCTAC-AGGGTTTCCATAACTGGACGCTCAACCCTTTCC 167846
|| ||| ||| | | || || | | ||||||| ||||| |||||| | |||||||| |
Sbjct 8438 TATTTTTCGATCCATCCTCTTTTTTCGAGGGTTT-CATAATTGGACGTTGAACCCTTTTC 8380
Query 167847 ATATGATGGGA 167857
|||||||||||
Sbjct 8379 ATATGATGGGA 8369
>seq15982
Length=164312
Score = 105 bits (116), Expect = 8e-18
Identities = 305/464 (66%), Gaps = 13/464 (3%)
Strand=Plus/Plus
Query 167336 TTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGT 167395
||| | ||||| || |||||| | || | |||||||| || | || | || | ||
Sbjct 19966 TTTTTTTTTGTAGGGTGGTCTAGTCTATTGCTTTTTCCT--TGTTCATTTCGCCGTAGGG 20023
Query 167396 GGCTGGCTTACTGGCACGACGTTTGTTACGAGCTGGTATAC----CCACGGGTTGGCGTC 167451
|| ||| ||| ||| ||||||||||| || |||||||| || ||||||||
Sbjct 20024 GGTTGGTTTATTGGTACGACGTTTGTAACTTCATGGTATACTCAATCATGGGTTGGCCCG 20083
Query 167452 TAGTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTAT 167511
| || | || ||| ||||| | || ||||| || || |||| |||| || | |
Sbjct 20084 TTCATATTTGGAAGGTTGCAATTTCTTAACCGCAGCCGTTTCTACTCATGCTAACAGTTT 20143
Query 167512 GGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTG 167571
| || ||| || | || ||||| ||| | || || | ||| | | |||||
Sbjct 20144 AGCACACTCT----TTGTTGTTGTGGGTCTTGAAGCACAAGGCGGTTTTACTCGTTGGTG 20199
Query 167572 CCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATT 167631
|| || |||| || ||| ||||||| | || || || || |||| || ||||| ||
Sbjct 20200 TCA-ATTAGGGGCCTGTGGACTTTTGTTACTCTTCATGGTGCTTTTGGACTAATAGGTTT 20258
Query 167632 TATGCTTCGGCAATTTGAGATAAG-TAGACTAGTAGGTATCCGTCCTTACAATGCGATTG 167690
|||| | || ||||| || | | | || || | | |||| | ||| ||||
Sbjct 20259 TATGTTACGCCAATTCGA-ACATGCGCGATCTGTTCAATTGTGCTCTTATAGTGCAATTG 20317
Query 167691 CTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGT 167750
| || || || || |||| || || || | ||| || || || ||||| || || || |
Sbjct 20318 CATTCTCAGGCCCAATTGTCGTTTTGGTTTATGTATTCCTAATTTATCCACTAGGTCAAT 20377
Query 167751 CCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTT 167794
| |||||||| ||||| || |||||| | |||| || |||
Sbjct 20378 CTAGTTGGTTTTTTGCGCCTAGTTTTGGTATAACAGCTATTTTT 20421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566912308044800
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