Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq11475 533 2e-146 seq15224 246 3e-60 seq10333 152 6e-32 seq15824 138 1e-27 seq12771 107 2e-18 seq15982 105 8e-18 >seq11475 Length=22225 Score = 533 bits (590), Expect = 2e-146 Identities = 728/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | ||||| || || ||||| || |||||||| Sbjct 12883 TTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 12824 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||||||| | || | || || ||| |||| || ||||||||| Sbjct 12823 CTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTTT 12764 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGG-TGCTAATTTTCT 167478 || || |||||||| || |||||||| | || | || || ||| ||||| | Sbjct 12763 GTAACTTCATGGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGC-AATTTCTT 12705 Query 167479 CACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 167538 || ||||| || || ||||||||| | | | | || ||| | | | || ||||| Sbjct 12704 AACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGGG 12645 Query 167539 TCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGT 167598 |||||| | || || ||||| | | ||||| || | || || || ||| ||||||| Sbjct 12644 TCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGT 12585 Query 167599 GGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAG 167658 || || || || || || | || ||||| |||||| | || ||||| || | | | Sbjct 12584 TGCTCTTCATGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCG 12525 Query 167659 ACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGT 167718 | || | || ||||| ||||| || || || || || || |||||||| ||||| Sbjct 12524 ATCTGTTCAATTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGT 12465 Query 167719 GTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGG 167778 ||||| || || || ||||| || || || || ||||||||||||| || ||||| Sbjct 12464 TTCTGTATTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 12405 Query 167779 TGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAA 167838 ||| ||||| || ||| ||||| | || || | || || || ||||| |||||||| || Sbjct 12404 TGTAGCAGCTATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTGAA 12345 Query 167839 CCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCA 167898 |||||| ||||||||||||||||||||| | | |||| || |||| | || || || Sbjct 12344 CCCTTTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCA 12285 Query 167899 TGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGC 167958 ||||| ||| ||||| |||||| | | || |||||||| ||||| || ||| || Sbjct 12284 TGGTGCTACCGTAGAAAATACTTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGC 12225 Query 167959 ATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTC 168018 ||| | | ||||| | || ||||||||||| |||||||| |||||||| || ||||| Sbjct 12224 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTC 12165 Query 168019 TCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGT 168078 ||||||||||| ||||||| |||||| |||||||| || ||||||||| | || || Sbjct 12164 CCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 12105 Query 168079 TCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCG 168138 || || | || | |||| ||| || |||| | ||||||| || | || || || Sbjct 12104 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACG 12045 Query 168139 TGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTT 168198 ||| |||||||| || || || ||| | | ||||| || ||||| || ||||| ||||| Sbjct 12044 TGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAGACTTT 11985 Query 168199 CTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCA 168258 ||| || ||||| || ||| | |||||||| | ||||| |||||||| | ||| || Sbjct 11984 CTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 11925 Query 168259 ACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || ||||||||| || ||||||| || || || | || | || |||||||| Sbjct 11924 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 11871 >seq15224 Length=172684 Score = 246 bits (272), Expect = 3e-60 Identities = 299/405 (74%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 166441 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 166500 ||||| || || || |||||||| || | || || ||| || ||||||| | |||||| Sbjct 89319 GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCAA 89378 Query 166501 GGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTC 166560 || || ||||| | ||||| | || || ||| || ||||||| |||| |||| Sbjct 89379 GGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGTA 89438 Query 166561 TTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTA 166620 ||||| || |||||||||||||| |||||||| || || ||| |||||||||| |||||| Sbjct 89439 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTA 89498 Query 166621 TTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCCG 166679 ||||| || || || || || ||||| || | || |||| || | | | | | Sbjct 89499 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTT-CTAGTTTGATTAG 89557 Query 166680 TGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 166739 || ||||| |||| ||| ||| || | ||||||| ||||||||||| ||||| || Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617 Query 166740 CTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 166799 || || ||||| |||||||||| ||| || ||||| ||||||||||||| ||| || Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677 Query 166800 CAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGT 166844 |||||| || || || | ||||||||| | || || ||||| || Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722 Score = 158 bits (174), Expect = 1e-33 Identities = 144/182 (79%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 166711 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTC 166770 ||||||| ||||||||||| ||||| || || || ||||| |||||||||||||| || Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 166771 GGTCGCCTGATCTTCCAATAC------GCTTCCTTCAACAACTCTCGCTCGCTGCACTTC 166824 ||||| ||||||||||||| ||| |||||||| ||||| || | |||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 166825 TTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATG 166884 ||| | || || ||||| || |||||||| |||||||||||| | ||| ||||||| ||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 166885 GC 166886 || Sbjct 89914 GC 89915 Score = 109 bits (120), Expect = 6e-19 Identities = 128/171 (75%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 166171 CCTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAAC 166230 || || ||| |||| |||||||| ||||| || || | || |||||| | || || ||| Sbjct 89144 CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAAC 89203 Query 166231 AACATCATCTCTGGTGCTGTTGTCCC--CTCCTCCAACGCAATTGGTCTTCACTTCTATC 166288 || || || |||||||| || | || || || || || || || | || || |||| Sbjct 89204 AATATTATTTCTGGTGCCATTATTCCTACTTCTGCA--GCTATAGGGTTGCATTTTTATC 89261 Query 166289 CCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTT 166339 | || |||||||||||||| ||||||| ||| | ||||| |||||||||| Sbjct 89262 CAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312 >seq10333 Length=16991 Score = 152 bits (168), Expect = 6e-32 Identities = 185/252 (73%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 167860 TGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATAC 167919 ||||||| | | |||| || |||| | || || ||||||| ||| ||||| ||||| Sbjct 6646 TGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATAC 6705 Query 167920 TCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGA 167979 | | | || |||||||| ||||| || ||| || ||| | | ||||| | || Sbjct 6706 TTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGA 6765 Query 167980 GGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTT 168039 ||||||||||| |||||||| |||||||| || ||||| ||||||||||| ||||||| Sbjct 6766 AGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTT 6825 Query 168040 CAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGAC 168099 |||||| |||||||| || ||||||||| | || || || || | || | |||| Sbjct 6826 TTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACAGGTTTATGGAT 6885 Query 168100 AAGTTCTATTGG 168111 ||| || |||| Sbjct 6886 GAGTGCTCTTGG 6897 >seq15824 Length=139560 Score = 138 bits (152), Expect = 1e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 167672 CGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTC 167731 || ||||| ||||| || || || || || || |||||||| ||||| ||||| || || Sbjct 61301 CGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTA 61242 Query 167732 ATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATA 167791 || ||||| || | || || ||||||||||||| || |||||||| ||||| || Sbjct 61241 ATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATT 61182 Query 167792 TTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATG 167851 ||| ||||| | ||||| | || || || ||||| ||||||| ||| |||| |||||| Sbjct 61181 TTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACGCAGAACTCTTTTCATATG 61122 Query 167852 ATGGGA 167857 |||||| Sbjct 61121 ATGGGA 61116 >seq12771 Length=31889 Score = 107 bits (118), Expect = 2e-18 Identities = 140/191 (73%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 167672 CGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTC 167731 || ||||| ||||| || || || || || | |||| ||| ||||| ||||| || || Sbjct 8558 CGCCCTTATAATGCAATAGCATTCTCGGGCCAAATTGTTGTTTTTGTTTCTGTATTCCTA 8499 Query 167732 ATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGG----TGTTGCAGC 167787 || ||||| || | || || ||||||||||||| || ||||| ||| ||| | Sbjct 8498 ATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTATGTAGCAAC 8439 Query 167788 GATATTTAGATTCCTACTATTCCTAC-AGGGTTTCCATAACTGGACGCTCAACCCTTTCC 167846 || ||| ||| | | || || | | ||||||| ||||| |||||| | |||||||| | Sbjct 8438 TATTTTTCGATCCATCCTCTTTTTTCGAGGGTTT-CATAATTGGACGTTGAACCCTTTTC 8380 Query 167847 ATATGATGGGA 167857 ||||||||||| Sbjct 8379 ATATGATGGGA 8369 >seq15982 Length=164312 Score = 105 bits (116), Expect = 8e-18 Identities = 305/464 (66%), Gaps = 13/464 (3%) Strand=Plus/Plus Query 167336 TTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGT 167395 ||| | ||||| || |||||| | || | |||||||| || | || | || | || Sbjct 19966 TTTTTTTTTGTAGGGTGGTCTAGTCTATTGCTTTTTCCT--TGTTCATTTCGCCGTAGGG 20023 Query 167396 GGCTGGCTTACTGGCACGACGTTTGTTACGAGCTGGTATAC----CCACGGGTTGGCGTC 167451 || ||| ||| ||| ||||||||||| || |||||||| || |||||||| Sbjct 20024 GGTTGGTTTATTGGTACGACGTTTGTAACTTCATGGTATACTCAATCATGGGTTGGCCCG 20083 Query 167452 TAGTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTAT 167511 | || | || ||| ||||| | || ||||| || || |||| |||| || | | Sbjct 20084 TTCATATTTGGAAGGTTGCAATTTCTTAACCGCAGCCGTTTCTACTCATGCTAACAGTTT 20143 Query 167512 GGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTG 167571 | || ||| || | || ||||| ||| | || || | ||| | | ||||| Sbjct 20144 AGCACACTCT----TTGTTGTTGTGGGTCTTGAAGCACAAGGCGGTTTTACTCGTTGGTG 20199 Query 167572 CCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATT 167631 || || |||| || ||| ||||||| | || || || || |||| || ||||| || Sbjct 20200 TCA-ATTAGGGGCCTGTGGACTTTTGTTACTCTTCATGGTGCTTTTGGACTAATAGGTTT 20258 Query 167632 TATGCTTCGGCAATTTGAGATAAG-TAGACTAGTAGGTATCCGTCCTTACAATGCGATTG 167690 |||| | || ||||| || | | | || || | | |||| | ||| |||| Sbjct 20259 TATGTTACGCCAATTCGA-ACATGCGCGATCTGTTCAATTGTGCTCTTATAGTGCAATTG 20317 Query 167691 CTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGT 167750 | || || || || |||| || || || | ||| || || || ||||| || || || | Sbjct 20318 CATTCTCAGGCCCAATTGTCGTTTTGGTTTATGTATTCCTAATTTATCCACTAGGTCAAT 20377 Query 167751 CCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTT 167794 | |||||||| ||||| || |||||| | |||| || ||| Sbjct 20378 CTAGTTGGTTTTTTGCGCCTAGTTTTGGTATAACAGCTATTTTT 20421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566912308044800