Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq22481 96.9 2e-15 seq15654 91.5 1e-13 seq44327 89.7 4e-13 seq15753 86.0 4e-12 seq15394 86.0 4e-12 seq15779 84.2 2e-11 >seq22481 Length=674 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 21835 TGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA-AGCCGCA 21893 |||| || ||| |||| || ||||| || ||||| |||||| | || || ||| || Sbjct 372 TGCAGATCTTTGTTAAGACCTTAACTGGGAAAACGATTACCCTCGAGGTTGAGAGCAGC- 430 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || || ||||| |||||| | || | ||||| Sbjct 431 GACACCATTGACAATGTCAAGACTAAGATCCAAGATAAGGAGGGTATCCCACCAGACCAA 490 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||||||||| || || ||| ||| |||| || ||||| Sbjct 491 CAGAGGCTGATCTTTGCTGGCAAACAGCTCGAGGATGGTCGTACTTTGGCTGACTACAAC 550 Query 22014 ATTCAGAAGGAATCTAC 22030 ||||||||||| ||||| Sbjct 551 ATTCAGAAGGAGTCTAC 567 >seq15654 Length=163759 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA-AGCCGC 21892 ||||| || ||| |||| || ||||| || ||||| |||||| | || || ||| || Sbjct 111787 ATGCAGATCTTTGTTAAGACCTTAACTGGGAAAACGATTACCCTCGAGGTCGAGAGCAGC 111846 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAA 21949 || || | | | || | ||| || || ||||| ||||| | ||||| | Sbjct 111847 -GACACAATTGACAATGTCAAGACTAAGATCCAAGATAAGGAGGGCATCCCACCTG---A 111902 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||| ||||| || ||||||||||||||||| || || ||| ||| |||| || || Sbjct 111903 CCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTCGAGGATGGTCGTACTTTGGCTGACTA 111962 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| ||||||||||| || || ||||| |||| | ||| | || || || Sbjct 111963 CAACATTCAGAAGGAGTCCACCCTTCACTTGGTCCTCCGTCTTCGTGGTGG 112013 >seq44327 Length=9034 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA-AGCCGC 21892 ||||| || ||| |||| || ||||| || ||||| |||||| | || || ||| || Sbjct 7372 ATGCAGATCTTTGTTAAGACCTTAACTGGGAAAACGATTACCCTCGAGGTCGAGAGCAGC 7431 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| || || ||||| ||||| | || |||| Sbjct 7432 -GACACAATTGACAATGTCAAGACTAAGATCCAAGATAAGGAGGGCATCCCACCGGACCA 7490 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| || || ||| | | || |||| || ||||| Sbjct 7491 GCAGAGGCTGATCTTTGCTGGGAAACAGCTCGAGGATGTCGTA-CTTTGGCTGACTACAA 7549 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || ||||| |||| | ||| | || || || Sbjct 7550 CATTCAGAAGGAATCCACCCTTCACTTGGTCCTCCGTCTTCGTGGTGG 7597 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA-AGCCGC 21892 ||||| || ||| |||| || ||||| || ||||| |||||| | || || ||| || Sbjct 7075 ATGCAGATCTTTGTTAAGACCTTAACTGGGAAAACGATTACCCTCGAGGTTGAGAGCAGC 7134 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| || || ||||| ||||| | || |||| Sbjct 7135 -GACACCATTGACAATGTCAAGACTAAGATCCAAGATAAGGAGGGCATCCCACCGGACCA 7193 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || ||||||||||| ||||| || || ||| ||| |||| || ||||| Sbjct 7194 GCAGAGGCTGATCTTTGCTGGGAAACAGCTCGAGGATGGTCGTACTTTGGCTGACTACAA 7253 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||||||||| || ||||| |||| Sbjct 7254 CATTCAGAAGGAATCCACCCTTCACTTGGT 7283 >seq15753 Length=130878 Score = 86.0 bits (94), Expect = 4e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21917 AAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAA 21976 ||||||| | || || | |||| | ||| | ||||||||||| | || |||||||| || Sbjct 124067 AAAAATTCCGGACAAGGGGGGTATCCCTCCAGACCAACAGAGATTGATATTTGCTGGAAA 124008 Query 21977 ACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 || || ||||| || ||||||| ||||| ||||| |||||||| || || || Sbjct 124007 GCAGCTCGAAGACGGTCGTACGTTGGCCGACTACAACATTCAAAAGGAATCGACCCTCCA 123948 Query 22037 TATGGTATTACGTTTACGAGGA 22058 | |||| || ||| | || ||| Sbjct 123947 TTTGGTGTTGCGTCTTCGTGGA 123926 >seq15394 Length=94532 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | ||||| |||| || ||||| || ||| | ||| ||| | | Sbjct 44168 ATGCAGATCTTCGTGAAAACCCTAACTGGGAAAACAATAACCCTAGAAGTCGAATCATCG 44227 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || || ||| || || ||||| | || | | ||| Sbjct 44228 GACACAATCGACAATTTGAAATCGAAGATTCAAGAGAAGGAGGGGATTCCAGCGGATCAA 44287 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || || ||||| ||||| ||||| || |||||| ||| ||||| || ||||| Sbjct 44288 CAAAGGCTAATCTTCGCTGGAAAACAGCTCGAAGATGGCCGAACAATGGCGGACTACAAC 44347 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || ||||| |||| ||||| | || ||||| Sbjct 44348 ATCCAGAAGGAATCGACGCTTCACTTGGTTTTACGACTCCGTGGAGG 44394 >seq15779 Length=145502 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGA-AGCCGC 21892 |||||||| ||| | || || || |||||||| || || ||| | || || ||| | Sbjct 122384 ATGCAAATCTTTGTGAAGACTTTGACGGGCAAGACTATCACCCTTGAGGTTGAGAGCAGT 122443 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| || ||| || ||||||||| | ||| | |||| Sbjct 122444 -GACACCATCGACAATGTGAAGACCAAGATTCAGGACAAAGAGGGTATTCCTCCAGACCA 122502 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| || |||||||| || ||||| || || ||| ||| | || || ||||| Sbjct 122503 GCAGAGGCTGATCTTTGCGGGGAAACAGCTTGAGGATGGGCGCACTTTAGCTGACTACAA 122562 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || || ||||| |||| | ||| | || || || Sbjct 122563 CATTCAGAAGGAGTCGACCCTTCACTTGGTCCTTCGTCTTCGTGGTGG 122610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357928006841152