Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq16048 105 8e-18 seq15946 105 8e-18 seq11586 105 8e-18 seq16162 84.2 3e-11 >seq16048 Length=246288 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| |||||||||||||| || ||||||||||| |||||| | || Sbjct 204510 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 204451 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || ||||| || | ||| |||||||| || || || || ||||| || Sbjct 204450 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 204391 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 126204 ||||| |||||||| || || | | | ||||||||| Sbjct 204390 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA 204353 >seq15946 Length=172941 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| |||||||||||||| || ||||||||||| |||||| | || Sbjct 58575 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 58516 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || ||||| || | ||| |||||||| || || || || ||||| || Sbjct 58515 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 58456 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 126204 ||||| |||||||| || || | | | ||||||||| Sbjct 58455 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA 58418 >seq11586 Length=26096 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| |||||||||||||| || ||||||||||| |||||| | || Sbjct 4333 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 4274 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || ||||| || | ||| |||||||| || || || || ||||| || Sbjct 4273 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 4214 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 126204 ||||| |||||||| || || | | | ||||||||| Sbjct 4213 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA 4176 >seq16162 Length=245457 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 114694 CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC 114753 |||||| || ||||| || |||||||||||| |||| | |||| || ||||| || Sbjct 41742 CTCGTAATTAGTGTAAAGCACTTCAAACTCTTTACCCCAGCAGTCTGCAAGACCTGGGGC 41683 Query 114754 CTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTC 114813 || | || || || | |||||||||||| | | | ||| | || |||||| || || Sbjct 41682 CTCGTTAGGACAAAACAAGGACCATTGACCATCATTTTGAACCCTCTCCATGAACAGATC 41623 Query 114814 TGGGATCCAGAGAGCTGAGAAGAGATCCCGA 114844 || | ||| ||||| | |||||||| ||| Sbjct 41622 AGGCACCCAAAGAGCAAAAAAGAGATCACGA 41592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597016931511040