Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq13853 104 2e-17 seq13717 96.9 2e-15 seq44944 95.1 9e-15 seq14292 95.1 9e-15 seq16149 93.3 3e-14 seq37662 91.5 1e-13 seq15779 89.7 4e-13 seq14479 89.7 4e-13 >seq13853 Length=43806 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || |||||||| || || ||||| ||||||||||| | | | | ||||||| Sbjct 18859 AACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCTTC 18800 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| ||||| | |||| ||| || ||||| ||||||||||||||||| Sbjct 18799 AAGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTG 18740 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| |||| ||| | || || || || |||| || |||| || || || || Sbjct 18739 GATTTTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACTTCTAGAGTGATTGTCTT 18680 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || |||||||| Sbjct 18679 GCCGGTTAGGGTTTTCACGAAGATTTGCAT 18650 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || |||||||| || || ||||| ||||||||||| | | | | ||||||| Sbjct 9277 AACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCTTC 9218 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| ||||| | |||| ||| || ||||| ||||||||||||||||| Sbjct 9217 AAGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTG 9158 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| |||| ||| | || || || || |||| || |||| || || || || Sbjct 9157 GATTTTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACTTCTAGAGTGATTGTCTT 9098 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| || || |||||||| Sbjct 9097 GTCGGTTAGGGTTTTCACGAAGATTTGCAT 9068 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || || ||||| ||| ||| | | ||||||| | || Sbjct 9952 TGGAGGGTCGACTCCTTCTGAATATTGTAGTCGGCCAGAGTACGGCCGTCTTCCATCTGC 9893 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || ||||||| | |||||||| |||||| || |||||||| || ||| Sbjct 9892 TTCCCTGCAAATATCAACCTTTGTTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTG 9833 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| | || || || || || | || || || | ||| ||||| || |||||| Sbjct 9832 GTCTTCACATTGTCGATCGTGTCACTGCTCTCCACCTCCAGGGTGATGGTCTTTCCTGTC 9773 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | || || || |||||||||||| Sbjct 9772 AACGTCTTCACGAAAATTTGCATA 9749 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | || || | ||| || || || || ||||| ||||| || ||| Sbjct 9748 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 9689 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | || || | || || || ||| | ||||||||||| ||||| ||| Sbjct 9688 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 9629 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| || || | || || | || || || ||||| | || || Sbjct 9628 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACC 9569 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| || || |||| || ||||||||||| |||||| Sbjct 9568 TCGAGAGTGATGGTCTTCCCCGTCAAGGTCTTTACAAAAATCTGCATA 9521 >seq13717 Length=68558 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || || || |||||||| || ||| | | ||||||| Sbjct 35026 ACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGTGTACGGCCGTCTTCA 35085 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| || ||| | || | ||| |||||||| |||||| ||||||||||| Sbjct 35086 AGCTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGG 35145 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| |||| ||| | || || || || ||| || |||| ||| || || || Sbjct 35146 ATCTTGGTTTTCACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATCGTCTTC 35205 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 ||||| || ||||| || || || ||||| ||| Sbjct 35206 CCTGTTAGGGTTTTCACGAAGATCTGCATTTTT 35238 >seq44944 Length=25146 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || |||||||| || || || || |||||||| || Sbjct 21238 CCACCACGCAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCA 21297 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| || | ||| || |||||| | |||| ||| || ||||| || Sbjct 21298 AGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGG 21357 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| |||| ||| | || || || ||| | | || || Sbjct 21358 ATCCCTTCCTTGTCCTGGATTTTGGTTTTGACATTGTCGATTGTGTCGGAACTCTCGACC 21417 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || || || ||||| || || || || || |||||||| Sbjct 21418 TCGAGAGTGATTGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT 21464 >seq14292 Length=64350 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || |||||||| || || || || |||||||| || Sbjct 43 CCACCACGCAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCA 102 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| || | ||| || |||||| | |||| ||| || ||||| || Sbjct 103 AGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGG 162 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| |||| ||| | || || || ||| | | || || Sbjct 163 ATCCCTTCCTTGTCCTGGATTTTGGTTTTGACATTGTCGATTGTGTCGGAACTCTCGACC 222 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || || || ||||| || || || || || |||||||| Sbjct 223 TCGAGAGTGATTGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT 269 >seq16149 Length=224952 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| ||| ||| | | ||||||| | ||| Sbjct 103665 TGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGGCCGTCTTCAAGCTGT 103606 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | || | ||| ||||||||| || || ||||||||||| ||||||| Sbjct 103605 TTTCCGGCGAAGATGAGACGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGAATTTTG 103546 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| | || || || ||| ||| || || || || || || || || || Sbjct 103545 GTCTTCACATTGTCGATGGTGTCGGAGGATTCAACCTCCAATGTTATCGTCTTCCCCGTT 103486 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || ||||| || || || ||||| || Sbjct 103485 AGGGTTTTCACGAATATCTGCATCTT 103460 >seq37662 Length=1545 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || || || || || || || ||||| ||||| || ||||||||||| Sbjct 28 CCACCTCTCAGTCGCAACACCAAGTGGAGCGTAGACTCTTTCTGGATGTTGTAATCAGCA 87 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | |||| || | ||||| || ||| | ||||| | ||| || || || Sbjct 88 AGCGTACGACCGTCCTCAAGCTGTTTTCCCGCGAAAATCAACCTCTGCTGATCAGGAGGG 147 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || || ||| || || | || || || || | |||| || Sbjct 148 ATCCCCTCCTTATCTTGAACCTTGGACTTAACGTTGTCAATGGTGTCCGAACTTTCAACT 207 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct 208 TCCAAGGTGATCGTCTTCCCTGTCAGCGTTTTCACAAAGATTTGCATA 255 >seq15779 Length=145502 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| ||||| | | ||| || ||||| || || || || || |||||||| || ||| Sbjct 121926 CCACCACGCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCT 121867 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | ||||||| | ||||||||||| | |||| | || ||||| || Sbjct 121866 -AGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGG 121808 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| || || | || ||| | || ||||| ||| | |||| || Sbjct 121807 GATCCCTTCCTTGTCTTGGATCTTTGTCTTGACATTGTCGATAGTGTCGGAACTTTCGAC 121748 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || || || | ||||| || || |||||||| Sbjct 121747 CTCAAGAGTGATGGTCTTGCCGGTTAAGGTTTTGACGAAGATTTGCAT 121700 >seq14479 Length=56811 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || ||||||||||| || || || |||||||| || Sbjct 51370 CCACCACGCAGACGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCA 51429 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| || | ||| || |||||| | |||| ||| || ||||| || Sbjct 51430 AGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGG 51489 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| | || ||| | || || || ||| | | || || Sbjct 51490 ATCCCTTCCTTGTCCTGGATTTTGGTCTTGACATTGTCGATTGTGTCGGAACTCTCGACC 51549 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || || || || || || || || || || |||||||| Sbjct 51550 TCGAGAGTGATTGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 51596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357195609522080