Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq13853 104 2e-17
seq13717 96.9 2e-15
seq44944 95.1 9e-15
seq14292 95.1 9e-15
seq16149 93.3 3e-14
seq37662 91.5 1e-13
seq15779 89.7 4e-13
seq14479 89.7 4e-13
>seq13853
Length=43806
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| || |||||||| || || ||||| ||||||||||| | | | | |||||||
Sbjct 18859 AACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCTTC 18800
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| ||||| ||||| | |||| ||| || ||||| |||||||||||||||||
Sbjct 18799 AAGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTG 18740
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||||| |||| ||| | || || || || |||| || |||| || || || ||
Sbjct 18739 GATTTTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACTTCTAGAGTGATTGTCTT 18680
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || ||||| || || ||||||||
Sbjct 18679 GCCGGTTAGGGTTTTCACGAAGATTTGCAT 18650
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| || |||||||| || || ||||| ||||||||||| | | | | |||||||
Sbjct 9277 AACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCAGCCAAAGTACGGCCGTCTTC 9218
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| ||||| ||||| | |||| ||| || ||||| |||||||||||||||||
Sbjct 9217 AAGCTGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTG 9158
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||||| |||| ||| | || || || || |||| || |||| || || || ||
Sbjct 9157 GATTTTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACTTCTAGAGTGATTGTCTT 9098
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || || ||||| || || ||||||||
Sbjct 9097 GTCGGTTAGGGTTTTCACGAAGATTTGCAT 9068
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| ||||| || || || || || ||||| ||| ||| | | ||||||| | ||
Sbjct 9952 TGGAGGGTCGACTCCTTCTGAATATTGTAGTCGGCCAGAGTACGGCCGTCTTCCATCTGC 9893
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || || ||||||| | |||||||| |||||| || |||||||| || |||
Sbjct 9892 TTCCCTGCAAATATCAACCTTTGTTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTG 9833
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| || ||| | || || || || || | || || || | ||| ||||| || ||||||
Sbjct 9832 GTCTTCACATTGTCGATCGTGTCACTGCTCTCCACCTCCAGGGTGATGGTCTTTCCTGTC 9773
Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177
| || || || ||||||||||||
Sbjct 9772 AACGTCTTCACGAAAATTTGCATA 9749
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || || | || || | ||| || || || || ||||| ||||| || |||
Sbjct 9748 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 9689
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | | || || | || || || ||| | ||||||||||| ||||| |||
Sbjct 9688 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 9629
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| || |||||||| || || | || || | || || || ||||| | || ||
Sbjct 9628 ATGCCCTCCTTGTCCTGGATCTTTGTCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACC 9569
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| | || ||||| || || |||| || ||||||||||| ||||||
Sbjct 9568 TCGAGAGTGATGGTCTTCCCCGTCAAGGTCTTTACAAAAATCTGCATA 9521
>seq13717
Length=68558
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || ||||| || || || || || |||||||| || ||| | | |||||||
Sbjct 35026 ACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGTGTACGGCCGTCTTCA 35085
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| ||||| || ||| | || | ||| |||||||| |||||| |||||||||||
Sbjct 35086 AGCTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGG 35145
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| |||| ||| | || || || || ||| || |||| ||| || || ||
Sbjct 35146 ATCTTGGTTTTCACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATCGTCTTC 35205
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180
||||| || ||||| || || || ||||| |||
Sbjct 35206 CCTGTTAGGGTTTTCACGAAGATCTGCATTTTT 35238
>seq44944
Length=25146
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| |||| | | || || |||||||| || || || || |||||||| ||
Sbjct 21238 CCACCACGCAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCA 21297
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | |||| || | ||| || |||||| | |||| ||| || ||||| ||
Sbjct 21298 AGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGG 21357
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||||||||| |||||| |||| ||| | || || || ||| | | || ||
Sbjct 21358 ATCCCTTCCTTGTCCTGGATTTTGGTTTTGACATTGTCGATTGTGTCGGAACTCTCGACC 21417
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | || || || || ||||| || || || || || ||||||||
Sbjct 21418 TCGAGAGTGATTGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT 21464
>seq14292
Length=64350
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| |||| | | || || |||||||| || || || || |||||||| ||
Sbjct 43 CCACCACGCAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCA 102
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | |||| || | ||| || |||||| | |||| ||| || ||||| ||
Sbjct 103 AGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGG 162
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||||||||| |||||| |||| ||| | || || || ||| | | || ||
Sbjct 163 ATCCCTTCCTTGTCCTGGATTTTGGTTTTGACATTGTCGATTGTGTCGGAACTCTCGACC 222
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | || || || || ||||| || || || || || ||||||||
Sbjct 223 TCGAGAGTGATTGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT 269
>seq16149
Length=224952
Score = 93.3 bits (102), Expect = 3e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| ||||| || || || || |||||||| ||| ||| | | ||||||| | |||
Sbjct 103665 TGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGGCCGTCTTCAAGCTGT 103606
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || ||| | || | ||| ||||||||| || || ||||||||||| |||||||
Sbjct 103605 TTTCCGGCGAAGATGAGACGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGAATTTTG 103546
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| || ||| | || || || ||| ||| || || || || || || || || ||
Sbjct 103545 GTCTTCACATTGTCGATGGTGTCGGAGGATTCAACCTCCAATGTTATCGTCTTCCCCGTT 103486
Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179
|| ||||| || || || ||||| ||
Sbjct 103485 AGGGTTTTCACGAATATCTGCATCTT 103460
>seq37662
Length=1545
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| || || || || || || || ||||| ||||| || |||||||||||
Sbjct 28 CCACCTCTCAGTCGCAACACCAAGTGGAGCGTAGACTCTTTCTGGATGTTGTAATCAGCA 87
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | |||| || | ||||| || ||| | ||||| | ||| || || ||
Sbjct 88 AGCGTACGACCGTCCTCAAGCTGTTTTCCCGCGAAAATCAACCTCTGCTGATCAGGAGGG 147
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| || ||||| || || ||| || || | || || || || | |||| ||
Sbjct 148 ATCCCCTCCTTATCTTGAACCTTGGACTTAACGTTGTCAATGGTGTCCGAACTTTCAACT 207
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| ||||| || || || |||||||| ||||| ||||| |||||||||
Sbjct 208 TCCAAGGTGATCGTCTTCCCTGTCAGCGTTTTCACAAAGATTTGCATA 255
>seq15779
Length=145502
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008
||||| ||||| | | ||| || ||||| || || || || || |||||||| || |||
Sbjct 121926 CCACCACGCAAACGGAGAACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCT 121867
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
|| | | ||||||| | ||||||||||| | |||| | || ||||| ||
Sbjct 121866 -AGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGG 121808
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|| ||||||||||| || || | || ||| | || ||||| ||| | |||| ||
Sbjct 121807 GATCCCTTCCTTGTCTTGGATCTTTGTCTTGACATTGTCGATAGTGTCGGAACTTTCGAC 121748
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | || ||||| || || || | ||||| || || ||||||||
Sbjct 121747 CTCAAGAGTGATGGTCTTGCCGGTTAAGGTTTTGACGAAGATTTGCAT 121700
>seq14479
Length=56811
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| |||| | | || || ||||||||||| || || || |||||||| ||
Sbjct 51370 CCACCACGCAGACGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCA 51429
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | |||| || | ||| || |||||| | |||| ||| || ||||| ||
Sbjct 51430 AGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGG 51489
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||||||||| |||||| | || ||| | || || || ||| | | || ||
Sbjct 51490 ATCCCTTCCTTGTCCTGGATTTTGGTCTTGACATTGTCGATTGTGTCGGAACTCTCGACC 51549
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | || || || || || || || || || || || ||||||||
Sbjct 51550 TCGAGAGTGATTGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 51596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357195609522080
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