Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq13853 104 2e-17 seq44944 93.3 4e-14 seq14292 93.3 4e-14 seq16149 91.5 1e-13 seq37662 87.8 2e-12 seq14479 87.8 2e-12 seq15600 86.0 6e-12 >seq13853 Length=43806 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| ||||| || ||||| |||||||| || ||||| ||| | || ||| Sbjct 9734 CAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCCAATGTGCGCCCATC 9675 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | || ||||||||| | ||||| || ||||||||||| || ||||| || || || Sbjct 9674 CTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTC 9615 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || || ||| |||| || | || | ||||||| ||| || |||||||| | | Sbjct 9614 CTGGATCTTTGTCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCAACCTCGAGAGTGATGG 9556 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || | || ||||||||||| ||||| Sbjct 9555 TCTTCCCCGTCAAGGTCTTTACAAAAATCTGCAT 9522 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 ||||| || || | |||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 18795 TGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGGATT 18736 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 ||| ||||| || | ||||| || |||||||| ||||| | || |||||| Sbjct 18735 TTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACTTCTAGAGTGATTGTCTTGCCG 18676 Query 45315 GTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||| || || ||||||||| Sbjct 18675 GTTAGGGTTTTCACGAAGATTTGCATC 18649 Score = 98.7 bits (108), Expect = 9e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 ||||| || || | |||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 9213 TGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGGATT 9154 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 ||| ||||| || | ||||| || |||||||| ||||| | || ||| || Sbjct 9153 TTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACTTCTAGAGTGATTGTCTTGTCG 9094 Query 45315 GTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||| || || ||||||||| Sbjct 9093 GTTAGGGTTTTCACGAAGATTTGCATC 9067 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | |||| || || |||||||| ||||| ||||| Sbjct 19107 ATCCCACCACGGAGACGCAACACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATC- 19049 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || | | | | || || | ||| || || || | ||||| | ||||||||||| Sbjct 19048 -TGCCAATGTGCGGCCGTCCTCGAGTTGCTTCCCAGCAAAAATCAACCTTTGCTGGTCCG 18990 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||| || || ||||| |||| | || || | | || | || | ||||| || | Sbjct 18989 GAGGAATACCCTCCTTATCCTGAA-TCTTAGTCTTAACGTTGTCAATTGTGTCCGAGCTC 18931 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || |||||||||| ||| || || || | ||| || || ||||| |||||| Sbjct 18930 TCTACCTCGAGAGTAATCGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCATC 18877 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/236 (70%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || || || || || | |||||| ||||| || || ||||||||||| || || || || Sbjct 19563 ATACCACCACGAAGACGCAACACCAGATGGAGGGTCGATTCCTTTTGAATGTTGTAGTCG 19504 Query 45170 GCTGACGGTTTTAGAATCGTCC---AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTC 45226 || ||| || | ||||| | || ||||| || ||||||||| || ||||| Sbjct 19503 GCCAACG----TACGACCGTCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTC 19448 Query 45227 CGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAG 45285 || || || || || || || ||||||||| |||| || | || | |||||| || Sbjct 19447 TGGGGGGATACCCTCCTTGTCCTGAATTTTTGTCTTGA-CGTTGTCAATGGTGTCCGAGC 19389 Query 45286 ACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || || ||||| | ||| || || || | ||| || || || ||||||||| Sbjct 19388 TCTCCACCTCTAGAGTGATCGTCTTTCCTGTCAAAGTCTTCACGAAGATTTGCATC 19333 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| ||||| || ||||| |||||||| || ||||| ||| | || ||| Sbjct 19774 CAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCCAATGTGCGCCCATC 19715 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | || ||||||||| | ||||| || ||||||||||| || ||||| || || || Sbjct 19714 CTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTC 19655 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || || ||| |||| || | || | ||||||| ||| || ||||| || | | Sbjct 19654 CTGGATCTTTGTCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCAACCTCGAGGGTGATAG 19596 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || | || || || ||||| ||||| Sbjct 19595 TCTTCCCAGTCAAGGTCTTCACGAAAATCTGCAT 19562 >seq44944 Length=25146 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | ||| ||||| ||| | |||| ||||||||||| || || || ||||| || Sbjct 21310 TCCTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGGATCCCTTCCTTG 21369 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || ||||| ||||| || | ||||||||| |||||| |||||||| | Sbjct 21370 TCCTGGATTTTGGTTTTGACATTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATT 21429 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || || || || || || ||||||||| Sbjct 21430 GTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATC 21465 >seq14292 Length=64350 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | ||| ||||| ||| | |||| ||||||||||| || || || ||||| || Sbjct 115 TCCTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGGATCCCTTCCTTG 174 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || ||||| ||||| || | ||||||||| |||||| |||||||| | Sbjct 175 TCCTGGATTTTGGTTTTGACATTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATT 234 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || || || || || || ||||||||| Sbjct 235 GTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATC 270 >seq16149 Length=224952 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || || || ||||||||||| ||||| || || ||| | Sbjct 103689 CCACCGCGTAGACGGAGGACAAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCG 103630 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | |||||||| ||| | || | ||||| ||||| || || Sbjct 103629 AGTGTACGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCGGGAGGG 103570 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || ||||||||||| || | || | ||||||||| || || || Sbjct 103569 ATGCCTTCCTTGTCTTGAATTTTGGTCTTCACATTGTCGATGGTGTCGGAGGATTCAACC 103510 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || | || | ||| || || ||||| ||||| || || || |||||| Sbjct 103509 TCCAATGTTATCGTCTTCCCCGTTAGGGTTTTCACGAATATCTGCATC 103462 >seq37662 Length=1545 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | ||| || || || ||||| || | ||||| || Sbjct 253 ATACCACCACGAAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAACGTTATAGTCA 312 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | ||||||||||| | || | |||||||| || | Sbjct 313 GCCAATGTACGACCATCCTCGAGCTGTTTTCCTGCAAAGATTAGACGTTGCTGATCTGTG 372 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || |||| || | |||||||| |||| Sbjct 373 GGGATCCCTTCCTTCTCTTGGATCTTCGTCTTGACATTGTCGATTGTGTCGGAGCTCTCG 432 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || |||||||| | || ||||| ||||| ||||| ||||| ||||||||| Sbjct 433 ACATCGAGAGTCATGGTCTTGCCAGTTAGGGTTTTGACAAAGATTTGCATC 483 >seq14479 Length=56811 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | ||| ||||| ||| | |||| ||||||||||| || || || ||||| || Sbjct 51442 TCCTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGGATCCCTTCCTTG 51501 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || ||||| |||| || | ||||||||| |||||| |||||||| | Sbjct 51502 TCCTGGATTTTGGTCTTGACATTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATT 51561 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || || || || || || ||||||||| Sbjct 51562 GTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCATC 51597 >seq15600 Length=115454 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 ||||||||||| | || | |||||||| || | || || ||||| || ||||| || Sbjct 103196 TGTTTTCCTGCAAAGATTAGACGTTGCTGATCTGTGGGGATCCCTTCCTTCTCTTGGATC 103137 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || |||| || | |||||||| |||||| |||||||| | || ||||| Sbjct 103136 TTCGTCTTGACATTGTCGATTGTGTCGGAGCTCTCGACATCGAGAGTCATGGTCTTGCCA 103077 Query 45315 GTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||| ||||| ||||||||| Sbjct 103076 GTTAGGGTTTTGACAAAGATTTGCATC 103050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451748450996480