Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq13853 104 2e-17
seq44944 93.3 4e-14
seq14292 93.3 4e-14
seq16149 91.5 1e-13
seq37662 87.8 2e-12
seq14479 87.8 2e-12
seq15600 86.0 6e-12
>seq13853
Length=43806
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187
|||||| ||||| || ||||| |||||||| || ||||| ||| | || |||
Sbjct 9734 CAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCCAATGTGCGCCCATC 9675
Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247
|| | || ||||||||| | ||||| || ||||||||||| || ||||| || || ||
Sbjct 9674 CTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTC 9615
Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306
|| || ||| |||| || | || | ||||||| ||| || |||||||| | |
Sbjct 9614 CTGGATCTTTGTCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCAACCTCGAGAGTGATGG 9556
Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || || || | || ||||||||||| |||||
Sbjct 9555 TCTTCCCCGTCAAGGTCTTTACAAAAATCTGCAT 9522
Score = 104 bits (114), Expect = 2e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254
||||| || || | |||| |||||||||||||| ||||| ||||| || ||||| |||
Sbjct 18795 TGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGGATT 18736
Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314
||| ||||| || | ||||| || |||||||| ||||| | || ||||||
Sbjct 18735 TTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACTTCTAGAGTGATTGTCTTGCCG 18676
Query 45315 GTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| ||||| || || |||||||||
Sbjct 18675 GTTAGGGTTTTCACGAAGATTTGCATC 18649
Score = 98.7 bits (108), Expect = 9e-16
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254
||||| || || | |||| |||||||||||||| ||||| ||||| || ||||| |||
Sbjct 9213 TGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGGATT 9154
Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314
||| ||||| || | ||||| || |||||||| ||||| | || ||| ||
Sbjct 9153 TTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACTTCTAGAGTGATTGTCTTGTCG 9094
Query 45315 GTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| ||||| || || |||||||||
Sbjct 9093 GTTAGGGTTTTCACGAAGATTTGCATC 9067
Score = 98.7 bits (108), Expect = 9e-16
Identities = 165/234 (71%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | |||||| | |||| || || |||||||| ||||| |||||
Sbjct 19107 ATCCCACCACGGAGACGCAACACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATC- 19049
Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
|| | | | | || || | ||| || || || | ||||| | |||||||||||
Sbjct 19048 -TGCCAATGTGCGGCCGTCCTCGAGTTGCTTCCCAGCAAAAATCAACCTTTGCTGGTCCG 18990
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287
| ||||| || || ||||| |||| | || || | | || | || | ||||| || |
Sbjct 18989 GAGGAATACCCTCCTTATCCTGAA-TCTTAGTCTTAACGTTGTCAATTGTGTCCGAGCTC 18931
Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || |||||||||| ||| || || || | ||| || || ||||| ||||||
Sbjct 18930 TCTACCTCGAGAGTAATCGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCATC 18877
Score = 96.9 bits (106), Expect = 3e-15
Identities = 166/236 (70%), Gaps = 10/236 (4%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169
|| || || || || | |||||| ||||| || || ||||||||||| || || || ||
Sbjct 19563 ATACCACCACGAAGACGCAACACCAGATGGAGGGTCGATTCCTTTTGAATGTTGTAGTCG 19504
Query 45170 GCTGACGGTTTTAGAATCGTCC---AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTC 45226
|| ||| || | ||||| | || ||||| || ||||||||| || |||||
Sbjct 19503 GCCAACG----TACGACCGTCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTC 19448
Query 45227 CGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAG 45285
|| || || || || || || ||||||||| |||| || | || | |||||| ||
Sbjct 19447 TGGGGGGATACCCTCCTTGTCCTGAATTTTTGTCTTGA-CGTTGTCAATGGTGTCCGAGC 19389
Query 45286 ACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||| || || ||||| | ||| || || || | ||| || || || |||||||||
Sbjct 19388 TCTCCACCTCTAGAGTGATCGTCTTTCCTGTCAAAGTCTTCACGAAGATTTGCATC 19333
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187
|||||| ||||| || ||||| |||||||| || ||||| ||| | || |||
Sbjct 19774 CAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCCAATGTGCGCCCATC 19715
Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247
|| | || ||||||||| | ||||| || ||||||||||| || ||||| || || ||
Sbjct 19714 CTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTC 19655
Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306
|| || ||| |||| || | || | ||||||| ||| || ||||| || | |
Sbjct 19654 CTGGATCTTTGTCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCAACCTCGAGGGTGATAG 19596
Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || || || | || || || ||||| |||||
Sbjct 19595 TCTTCCCAGTCAAGGTCTTCACGAAAATCTGCAT 19562
>seq44944
Length=25146
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
|| || | ||| ||||| ||| | |||| ||||||||||| || || || ||||| ||
Sbjct 21310 TCCTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGGATCCCTTCCTTG 21369
Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305
|| || ||||| ||||| || | ||||||||| |||||| |||||||| |
Sbjct 21370 TCCTGGATTTTGGTTTTGACATTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATT 21429
Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||| || || || || || || |||||||||
Sbjct 21430 GTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATC 21465
>seq14292
Length=64350
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
|| || | ||| ||||| ||| | |||| ||||||||||| || || || ||||| ||
Sbjct 115 TCCTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGGATCCCTTCCTTG 174
Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305
|| || ||||| ||||| || | ||||||||| |||||| |||||||| |
Sbjct 175 TCCTGGATTTTGGTTTTGACATTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATT 234
Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||| || || || || || || |||||||||
Sbjct 235 GTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATC 270
>seq16149
Length=224952
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| ||||| || | | || || || || ||||||||||| ||||| || || ||| |
Sbjct 103689 CCACCGCGTAGACGGAGGACAAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCG 103630
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || || || | |||||||| ||| | || | ||||| ||||| || ||
Sbjct 103629 AGTGTACGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCGGGAGGG 103570
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|||||||| || ||||||||||| || | || | ||||||||| || || ||
Sbjct 103569 ATGCCTTCCTTGTCTTGAATTTTGGTCTTCACATTGTCGATGGTGTCGGAGGATTCAACC 103510
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| | || | ||| || || ||||| ||||| || || || ||||||
Sbjct 103509 TCCAATGTTATCGTCTTCCCCGTTAGGGTTTTCACGAATATCTGCATC 103462
>seq37662
Length=1545
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || || | ||| || | ||| || || || ||||| || | ||||| ||
Sbjct 253 ATACCACCACGAAGACGCAAGACCAAATGAAGGGTGGACTCCTTCTGAACGTTATAGTCA 312
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| || | ||||||||||| | || | |||||||| || |
Sbjct 313 GCCAATGTACGACCATCCTCGAGCTGTTTTCCTGCAAAGATTAGACGTTGCTGATCTGTG 372
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || ||||| || ||||| || || |||| || | |||||||| ||||
Sbjct 373 GGGATCCCTTCCTTCTCTTGGATCTTCGTCTTGACATTGTCGATTGTGTCGGAGCTCTCG 432
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| |||||||| | || ||||| ||||| ||||| ||||| |||||||||
Sbjct 433 ACATCGAGAGTCATGGTCTTGCCAGTTAGGGTTTTGACAAAGATTTGCATC 483
>seq14479
Length=56811
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
|| || | ||| ||||| ||| | |||| ||||||||||| || || || ||||| ||
Sbjct 51442 TCCTCGAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGGATCCCTTCCTTG 51501
Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305
|| || ||||| |||| || | ||||||||| |||||| |||||||| |
Sbjct 51502 TCCTGGATTTTGGTCTTGACATTGTCGATTGTGTCGGAACTCTCGACCTCGAGAGTGATT 51561
Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||| || || || || || || |||||||||
Sbjct 51562 GTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCATC 51597
>seq15600
Length=115454
Score = 86.0 bits (94), Expect = 6e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254
||||||||||| | || | |||||||| || | || || ||||| || ||||| ||
Sbjct 103196 TGTTTTCCTGCAAAGATTAGACGTTGCTGATCTGTGGGGATCCCTTCCTTCTCTTGGATC 103137
Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314
|| |||| || | |||||||| |||||| |||||||| | || |||||
Sbjct 103136 TTCGTCTTGACATTGTCGATTGTGTCGGAGCTCTCGACATCGAGAGTCATGGTCTTGCCA 103077
Query 45315 GTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| ||||| ||||| |||||||||
Sbjct 103076 GTTAGGGTTTTGACAAAGATTTGCATC 103050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451748450996480
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