Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_013085.1
Length=194454
Score E
Sequences producing significant alignments: (Bits) Value
seq11475 522 3e-143
seq15224 291 1e-73
seq10333 159 4e-34
seq8938 158 2e-33
seq15824 127 3e-24
seq12771 107 2e-18
seq15982 93.3 5e-14
seq14024 93.3 5e-14
>seq11475
Length=22225
Score = 522 bits (578), Expect = 3e-143
Identities = 728/1015 (72%), Gaps = 4/1015 (0%)
Strand=Plus/Plus
Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322
|||||||| || | || | || || ||||| |||| || ||||||||| || |||||
Sbjct 11871 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 11930
Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382
| |||||||| ||||| | ||||||||| || || || || ||||| ||||| |||
Sbjct 11931 TGAGCCGCCATCCAAGCACGAATACCTTCATTTAAGAGAATATTTTTGGTGTAGAAAGTC 11990
Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442
|| || || ||||| || ||||| | || ||||| ||||| |||||||| || | |||
Sbjct 11991 TCAAATTCAGGATCTTCGGCTGCACGTATTTCTTGGGAAACGAAGTCATAGGCACGTAGG 12050
Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502
|| | || ||||| | | |||| | |||| | ||| | || || |||||
Sbjct 12051 TTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 12110
Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562
| |||||||||||||| |||||| |||||| || || | ||||| || || |||||
Sbjct 12111 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAAATTTGGGACCAA 12170
Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622
||||| ||||| |||||||| ||||| || || || |||| || || | ||| ||| |
Sbjct 12171 AAACGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCCCGG 12230
Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682
|| ||||||| |||||||| || || |||||||| ||||| |||||||| ||||||
Sbjct 12231 AATGTATTTGCCCCATCACCATCCTCGAATAAAGTATTTTCTACGGTAGCACCATGAATA 12290
Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742
|| || |||| || | || || | ||| || || |||||||||||||| ||||| |||
Sbjct 12291 GCGCATAGCAGAGCGGCGCCCAATACACCAGCAACTCCCATCATATGAAAAGGGTTCAGC 12350
Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802
||||| || || || || || | ||||| | ||| || || || ||||| ||||||||
Sbjct 12351 GTCCAATTATGAAACCCTTGAAAAAAGAGGATGAATCGAAAAATAGCTGCTACACCAAAA 12410
Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862
|||||||||||||||| || || || || ||||| || || || ||||| |||||
Sbjct 12411 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAATACAGAAACAAAA 12470
Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921
|||||||| || || || || || |||||||| || || || | | || ||| || ||
Sbjct 12471 ACAGCAATTGGGCCCGAGAATGCTATTGCATTATAAGGGCGCA-ATTGAACAGATCGAGC 12529
Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981
| || || || || | ||| |||||||| || | || || || || || || |||||
Sbjct 12530 AAGTTCGAATTGGCGTAACATAAAACCTATTAGTCCGAAAGCACCATGAAGAGCAACAAA 12589
Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041
|| ||| || || || | ||| ||| || ||||| || || ||||| ||||||||
Sbjct 12590 AGTCCACAGGCCGCCTAATTGACACCAACGAGTAAAATCGCCTTGTGCTTCAGGACCCCA 12649
Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101
|| | | | || ||| | | | | ||||||||| || || || || || | |||
Sbjct 12650 CAGCAACAACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACGGCTGCGGTTAAGAA 12709
Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161
||| || || || | ||| ||| || | ||| ||||| ||||| || || || ||
Sbjct 12710 ATTGCAGCCTTCCAAATATGAACTGGCCAACCCATGAGTATACCATGAAGTTACAAACGT 12769
Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221
|| || || | |||||| || | || | |||||| ||| || || | ||||| ||
Sbjct 12770 CGTACCTGTAAACCAACCCCCTACAGCGAAATAAGCACAAGGAAAGAGCAATAGACCAGA 12829
Query 7222 CCAACCAACAAAAACGAACCTATCAC-GCTTAAGCCAGTCATCGAGTACATCAAA 7275
|||||| ||||||||||| | || | | ||| ||||||||| | | ||||||
Sbjct 12830 CCAACCTACAAAAACGAAACGGTCTCTACGTAA-CCAGTCATCCATAATATCAAA 12883
>seq15224
Length=172684
Score = 291 bits (322), Expect = 1e-73
Identities = 307/404 (76%), Gaps = 0/404 (0%)
Strand=Plus/Minus
Query 7730 ACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGG 7789
|| ||||| || || | ||||||||| | |||||||| |||||||| ||| ||||||
Sbjct 89722 ACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGG 89663
Query 7790 AAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGA 7849
||||||| |||||||| || | |||||||| ||||| || || || ||||| ||||||
Sbjct 89662 AAGATCAATCGACCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 89603
Query 7850 CCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAG 7909
|| || | ||||| | || || ||| || |||||||| | || || | |||
Sbjct 89602 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 89543
Query 7910 GTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCC 7969
||||| | ||||||||||| ||||| || || || || || || |||||||| || |||
Sbjct 89542 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCC 89483
Query 7970 AGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTG 8029
| |||||| || |||||||| |||||||||||||| || ||||| |||| |||| |||||
Sbjct 89482 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 89423
Query 8030 AACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAG 8089
|| |||||||| || || | ||||||| | ||||| || |||||||| | ||||||
Sbjct 89422 AAAGTACCAGAAATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAG 89363
Query 8090 ACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGC 8133
| | ||| || |||| || || ||||| ||||| || |||||
Sbjct 89362 ATCAAGAAAACGGCAGTAGCCGCTGCAACCGGAGCTGAATATGC 89319
Score = 131 bits (144), Expect = 2e-25
Identities = 138/182 (76%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 7688 GCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGG 7747
||||| ||||||| ||| | |||||| ||||| || || || || ||||| || || | |
Sbjct 89915 GCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCGACTACCGGCCAAGCAGCTAAG 89856
Query 7748 AAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTG------GAAGATCAGACGA 7801
|||||||| | ||||| || |||||||| ||| ||||| |||||||| |||
Sbjct 89855 AAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGATATTGGAAGATCAATCGA 89796
Query 7802 CCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAA 7861
||||| || || |||||||| ||||| || || || ||||| |||||||| || | |||
Sbjct 89795 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAA 89736
Query 7862 CC 7863
||
Sbjct 89735 CC 89734
Score = 113 bits (124), Expect = 6e-20
Identities = 119/157 (76%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 8235 AAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGT 8294
|||||||||| || || | ||||||||||| ||| ||||||||||| || ||||| || |
Sbjct 89312 AAGGACCACCATTATATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAAT 89253
Query 8295 GGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACA 8354
| | || ||||| ||||| ||||| || |||||||| || || ||||| || || |
Sbjct 89252 GCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAA 89193
Query 8355 TGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAAT 8391
|| || || | || |||||||| || || |||||
Sbjct 89192 GTAGAGATCCCGAAACAGGTTCACGAATCCCATCAAT 89156
>seq10333
Length=16991
Score = 159 bits (176), Expect = 4e-34
Identities = 165/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 6477 TCCAAAGACCCATAACAGGAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGA 6536
|||| | ||| | || || ||||| | |||||||||||||| |||||| |||||| |
Sbjct 6884 TCCATAAACCTGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAA 6825
Query 6537 AGGCGATACCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCT 6596
| || | ||||| || || ||||| ||||| ||||| |||||||| ||||| || || |
Sbjct 6824 AAGCAACCCCAAAAATTTGGGACCAAAAACGGTTAGCGGTGACCATTGAATAAGTTTCTT 6765
Query 6597 CTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAG 6656
| |||| || || | ||| ||| ||| ||||||| |||||||| || || ||||
Sbjct 6764 CAGCTTGAGTTGGGTTAAAAGCCCGGAATGTATTTGCCCCATCACCATCCTCGAATAAAG 6705
Query 6657 TATTCTCTACAGTAGCACCGTGAATAGCACAGAGCA 6692
|||| ||||| |||||||| |||||||| || ||||
Sbjct 6704 TATTTTCTACGGTAGCACCATGAATAGCGCATAGCA 6669
>seq8938
Length=12132
Score = 158 bits (174), Expect = 2e-33
Identities = 230/324 (71%), Gaps = 2/324 (1%)
Strand=Plus/Plus
Query 6257 TATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGT 6316
||| | |||||||| || | || | || || ||||| |||| || ||||||||| ||
Sbjct 1717 TATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGC 1776
Query 6317 TGATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAG 6376
||||| | ||||||| ||||| | ||||||||| || || || || ||||| |||
Sbjct 1777 TGATCTTGAGCCACCATCCAAGCACGAATACCTTCATTTAAGAGAATATTTTTGGTGTAG 1836
Query 6377 AACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCT--CTTGTGAAACAAAGTCATAAG 6434
|| ||||| || || ||||| || ||||| | || | |||| ||||| |||||||| |
Sbjct 1837 AAAGTCTCAAATTCAGGATCTTCGGCTGCACGTATATTTCTTGGGAAACGAAGTCATAGG 1896
Query 6435 CTCTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAG 6494
| | ||||| | || ||||| | | |||| | |||| | | | | || |
Sbjct 1897 CACGTAGGTTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAAACGGTTACTG 1956
Query 6495 GAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCT 6554
| ||||| | |||||||||||||| ||||| |||||| || || | ||||| | |
Sbjct 1957 GTACAAATAACATAAAGAAATGTAACCAACTTTTATTGGAAAAAGCAACCCCAAAAAGTT 2016
Query 6555 GAGACCAGAAACGATTAGCCGTGA 6578
| ||||| ||||| ||||| ||||
Sbjct 2017 GGGACCAAAAACGGTTAGCGGTGA 2040
>seq15824
Length=139560
Score = 127 bits (140), Expect = 3e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 6719 CCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAG 6778
|||||||||||||| | ||| ||||||| || || || || || | || || | |||
Sbjct 61117 CCCATCATATGAAAAGAGTTCTGCGTCCAATTATGAAACCCTTGAAAAAATAGGATGAAT 61176
Query 6779 CGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGA 6838
|| || || ||||| |||||||| |||||||||||||||| || || | || |||
Sbjct 61177 CGAAAAATAGCTGCTACACCAAAACTAGGCGCAAAGAACCAACCAGATTGATCTAGTGGA 61236
Query 6839 TACATGAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAG 6898
|| || || || ||||| ||||| |||||||| || || || || || |||||||| ||
Sbjct 61237 TAAATTAGGAATACAGAAACAAAAACAGCAATTGGGCCCGAGAATGCTATTGCATTATAA 61296
Query 6899 GGACG 6903
|| ||
Sbjct 61297 GGGCG 61301
>seq12771
Length=31889
Score = 107 bits (118), Expect = 2e-18
Identities = 170/241 (71%), Gaps = 6/241 (2%)
Strand=Plus/Plus
Query 6719 CCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAG 6778
|||||||||||||| ||||| | |||||| || || || || | | ||||| | | |
Sbjct 8370 CCCATCATATGAAAAGGGTTCAACGTCCAATTATGAAACCCTCGAAAAAAGAGGATGGAT 8429
Query 6779 CGGAATATCGCTGCAACA----CCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAG 6834
|| || || | ||| ||| ||||| |||||||||||||||| || || | ||
Sbjct 8430 CGAAAAATAGTTGCTACATACACCAAAACTAGGCGCAAAGAACCAACCAGATTGATCTAG 8489
Query 6835 AGGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATT 6894
||||| || || || ||||| ||||| ||| |||| | || || || || ||||||||
Sbjct 8490 TGGATAAATTAGGAATACAGAAACAAAAACAACAATTTGGCCCGAGAATGCTATTGCATT 8549
Query 6895 GTAGGGACGAATACCGACTAGA-CGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAA 6953
|| || || | | || ||| || || | || || || || | ||| |||||||| |
Sbjct 8550 ATAAGGGCGCA-ATTGAACAGATCGAGCAAGTTCGAATTGGCGTAACATAAAACCTATTA 8608
Query 6954 G 6954
|
Sbjct 8609 G 8609
>seq15982
Length=164312
Score = 93.3 bits (102), Expect = 5e-14
Identities = 189/277 (68%), Gaps = 23/277 (8%)
Strand=Plus/Minus
Query 6263 AGAGCGTTGCCTCTTGGCA-ATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATC 6321
|||||||| || | || | | ||||| |||| |||| || ||||||||| || |||||
Sbjct 21655 AGAGCGTTTCCACAGGGTAGAGCCTTCT-CAGGGAATATAAGGTTTTCATGAGGCTGATC 21597
Query 6322 CACTGGTGCCATCCAGGCACGTAGA---------CCTTCATTCAATAGGATGTTCTTGGT 6372
| |||||||| ||||| | | |||||||| | || || || ||||
Sbjct 21596 TTGAGCCGCCATCCAAGCACGAATAACCTGAATACCTTCATTGAG-AGAATATTTCTGGT 21538
Query 6373 ATAGAACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATA 6432
||||| ||||| || | ||||| || ||||| | | | ||||| ||||| ||||||||
Sbjct 21537 GTAGAAAGTCTCAAATTTAGGATCTTCAGCTGCAC-GTTATCTTGGGAAACGAAGTCATA 21479
Query 6433 AGCTCTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGG-----TCCAAAGACCC 6487
|| | ||||| |||| |||| || || | |||| |||| | |||
Sbjct 21478 GGCACGTAGGTT-----CAAGGCCAAACCGACTAACTCAAGAGCACTCATCCATAAACCG 21424
Query 6488 ATAACAGGAACAAACAGCATAAAGAAATGTAGCCAAC 6524
| | || ||||||| |||||||||||||| ||||
Sbjct 21423 GTTATTGGTACAAACAACATAAAGAAATGTAATCAAC 21387
>seq14024
Length=49420
Score = 93.3 bits (102), Expect = 5e-14
Identities = 234/353 (66%), Gaps = 7/353 (2%)
Strand=Plus/Minus
Query 6929 AACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCAT 6988
|| || || | ||| | |||||| || | || || || || || || ||||||| |||
Sbjct 34988 AATTGGCGTAACATAAGACCTATTAGTCCGAAAGCACCATGAAGAGCAACAAAAGTCCAC 34929
Query 6989 AGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGA 7048
| || || | ||| |||| || ||||| || || ||||| |||||||| | |
Sbjct 34928 TGGCCGCCTAATTGACGCCAACGAGTAAAATCGCCTTGTGCTTCAGGACCCCACAACAAC 34869
Query 7049 AGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACAT 7108
| | || ||| | | | | ||||||||| || | || || | |||||| ||
Sbjct 34868 AACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAATCGATTGCGGTTAAGAAATTGCAG 34809
Query 7109 CCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGTTGTGCCC 7168
|| || | ||| ||| || ||||| ||||| ||||| || || || || || ||
Sbjct 34808 CCTTCCAAATATGAACTGGCCATCCCATGAGTATACCATGAAGTTACAAACGTCGTACCT 34749
Query 7169 GTGAG-----CCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGACC 7223
|| | |||||| || | || | |||||| ||| || || | ||||| |||
Sbjct 34748 GTAAATTAAACCAACCCCCTACAGCAAAATAAGCACAAGGAAAGAGCAATAGACCCGACT 34689
Query 7224 AACCAACAAAAACGAACCTATCAC-GCTTAAGCCAGTCATCGAGTACATCAAA 7275
|||| ||||||||||| ||| | | ||| ||||||||| | | ||||||
Sbjct 34688 AACCTACAAAAACGAAATGATCTCTACGTAA-CCAGTCATCCATAATATCAAA 34637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621774170462720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |