Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq11475 522 3e-143 seq15224 291 1e-73 seq10333 159 4e-34 seq8938 158 2e-33 seq15824 127 3e-24 seq12771 107 2e-18 seq15982 93.3 5e-14 seq14024 93.3 5e-14 >seq11475 Length=22225 Score = 522 bits (578), Expect = 3e-143 Identities = 728/1015 (72%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | || | || || ||||| |||| || ||||||||| || ||||| Sbjct 11871 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 11930 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | ||||||||| || || || || ||||| ||||| ||| Sbjct 11931 TGAGCCGCCATCCAAGCACGAATACCTTCATTTAAGAGAATATTTTTGGTGTAGAAAGTC 11990 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| || ||||| | || ||||| ||||| |||||||| || | ||| Sbjct 11991 TCAAATTCAGGATCTTCGGCTGCACGTATTTCTTGGGAAACGAAGTCATAGGCACGTAGG 12050 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || | || ||||| | | |||| | |||| | ||| | || || ||||| Sbjct 12051 TTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 12110 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||||||||||||| |||||| |||||| || || | ||||| || || ||||| Sbjct 12111 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAAATTTGGGACCAA 12170 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 ||||| ||||| |||||||| ||||| || || || |||| || || | ||| ||| | Sbjct 12171 AAACGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCCCGG 12230 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| |||||||| || || |||||||| ||||| |||||||| |||||| Sbjct 12231 AATGTATTTGCCCCATCACCATCCTCGAATAAAGTATTTTCTACGGTAGCACCATGAATA 12290 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || |||| || | || || | ||| || || |||||||||||||| ||||| ||| Sbjct 12291 GCGCATAGCAGAGCGGCGCCCAATACACCAGCAACTCCCATCATATGAAAAGGGTTCAGC 12350 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | ||||| | ||| || || || ||||| |||||||| Sbjct 12351 GTCCAATTATGAAACCCTTGAAAAAAGAGGATGAATCGAAAAATAGCTGCTACACCAAAA 12410 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||||||||||| || || || || ||||| || || || ||||| ||||| Sbjct 12411 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAATACAGAAACAAAA 12470 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 |||||||| || || || || || |||||||| || || || | | || ||| || || Sbjct 12471 ACAGCAATTGGGCCCGAGAATGCTATTGCATTATAAGGGCGCA-ATTGAACAGATCGAGC 12529 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | || || || || | ||| |||||||| || | || || || || || || ||||| Sbjct 12530 AAGTTCGAATTGGCGTAACATAAAACCTATTAGTCCGAAAGCACCATGAAGAGCAACAAA 12589 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| || || || | ||| ||| || ||||| || || ||||| |||||||| Sbjct 12590 AGTCCACAGGCCGCCTAATTGACACCAACGAGTAAAATCGCCTTGTGCTTCAGGACCCCA 12649 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 || | | | || ||| | | | | ||||||||| || || || || || | ||| Sbjct 12650 CAGCAACAACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACGGCTGCGGTTAAGAA 12709 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 ||| || || || | ||| ||| || | ||| ||||| ||||| || || || || Sbjct 12710 ATTGCAGCCTTCCAAATATGAACTGGCCAACCCATGAGTATACCATGAAGTTACAAACGT 12769 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 || || || | |||||| || | || | |||||| ||| || || | ||||| || Sbjct 12770 CGTACCTGTAAACCAACCCCCTACAGCGAAATAAGCACAAGGAAAGAGCAATAGACCAGA 12829 Query 7222 CCAACCAACAAAAACGAACCTATCAC-GCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||| ||||||||||| | || | | ||| ||||||||| | | |||||| Sbjct 12830 CCAACCTACAAAAACGAAACGGTCTCTACGTAA-CCAGTCATCCATAATATCAAA 12883 >seq15224 Length=172684 Score = 291 bits (322), Expect = 1e-73 Identities = 307/404 (76%), Gaps = 0/404 (0%) Strand=Plus/Minus Query 7730 ACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGG 7789 || ||||| || || | ||||||||| | |||||||| |||||||| ||| |||||| Sbjct 89722 ACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGG 89663 Query 7790 AAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGA 7849 ||||||| |||||||| || | |||||||| ||||| || || || ||||| |||||| Sbjct 89662 AAGATCAATCGACCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 89603 Query 7850 CCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAG 7909 || || | ||||| | || || ||| || |||||||| | || || | ||| Sbjct 89602 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 89543 Query 7910 GTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCC 7969 ||||| | ||||||||||| ||||| || || || || || || |||||||| || ||| Sbjct 89542 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCC 89483 Query 7970 AGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTG 8029 | |||||| || |||||||| |||||||||||||| || ||||| |||| |||| ||||| Sbjct 89482 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 89423 Query 8030 AACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAG 8089 || |||||||| || || | ||||||| | ||||| || |||||||| | |||||| Sbjct 89422 AAAGTACCAGAAATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAG 89363 Query 8090 ACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGC 8133 | | ||| || |||| || || ||||| ||||| || ||||| Sbjct 89362 ATCAAGAAAACGGCAGTAGCCGCTGCAACCGGAGCTGAATATGC 89319 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 7688 GCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGG 7747 ||||| ||||||| ||| | |||||| ||||| || || || || ||||| || || | | Sbjct 89915 GCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCGACTACCGGCCAAGCAGCTAAG 89856 Query 7748 AAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTG------GAAGATCAGACGA 7801 |||||||| | ||||| || |||||||| ||| ||||| |||||||| ||| Sbjct 89855 AAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGATATTGGAAGATCAATCGA 89796 Query 7802 CCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAA 7861 ||||| || || |||||||| ||||| || || || ||||| |||||||| || | ||| Sbjct 89795 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAA 89736 Query 7862 CC 7863 || Sbjct 89735 CC 89734 Score = 113 bits (124), Expect = 6e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 8235 AAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGT 8294 |||||||||| || || | ||||||||||| ||| ||||||||||| || ||||| || | Sbjct 89312 AAGGACCACCATTATATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAAT 89253 Query 8295 GGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACA 8354 | | || ||||| ||||| ||||| || |||||||| || || ||||| || || | Sbjct 89252 GCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAA 89193 Query 8355 TGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAAT 8391 || || || | || |||||||| || || ||||| Sbjct 89192 GTAGAGATCCCGAAACAGGTTCACGAATCCCATCAAT 89156 >seq10333 Length=16991 Score = 159 bits (176), Expect = 4e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 6477 TCCAAAGACCCATAACAGGAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGA 6536 |||| | ||| | || || ||||| | |||||||||||||| |||||| |||||| | Sbjct 6884 TCCATAAACCTGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAA 6825 Query 6537 AGGCGATACCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCT 6596 | || | ||||| || || ||||| ||||| ||||| |||||||| ||||| || || | Sbjct 6824 AAGCAACCCCAAAAATTTGGGACCAAAAACGGTTAGCGGTGACCATTGAATAAGTTTCTT 6765 Query 6597 CTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAG 6656 | |||| || || | ||| ||| ||| ||||||| |||||||| || || |||| Sbjct 6764 CAGCTTGAGTTGGGTTAAAAGCCCGGAATGTATTTGCCCCATCACCATCCTCGAATAAAG 6705 Query 6657 TATTCTCTACAGTAGCACCGTGAATAGCACAGAGCA 6692 |||| ||||| |||||||| |||||||| || |||| Sbjct 6704 TATTTTCTACGGTAGCACCATGAATAGCGCATAGCA 6669 >seq8938 Length=12132 Score = 158 bits (174), Expect = 2e-33 Identities = 230/324 (71%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 6257 TATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGT 6316 ||| | |||||||| || | || | || || ||||| |||| || ||||||||| || Sbjct 1717 TATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGC 1776 Query 6317 TGATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAG 6376 ||||| | ||||||| ||||| | ||||||||| || || || || ||||| ||| Sbjct 1777 TGATCTTGAGCCACCATCCAAGCACGAATACCTTCATTTAAGAGAATATTTTTGGTGTAG 1836 Query 6377 AACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCT--CTTGTGAAACAAAGTCATAAG 6434 || ||||| || || ||||| || ||||| | || | |||| ||||| |||||||| | Sbjct 1837 AAAGTCTCAAATTCAGGATCTTCGGCTGCACGTATATTTCTTGGGAAACGAAGTCATAGG 1896 Query 6435 CTCTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAG 6494 | | ||||| | || ||||| | | |||| | |||| | | | | || | Sbjct 1897 CACGTAGGTTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAAACGGTTACTG 1956 Query 6495 GAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCT 6554 | ||||| | |||||||||||||| ||||| |||||| || || | ||||| | | Sbjct 1957 GTACAAATAACATAAAGAAATGTAACCAACTTTTATTGGAAAAAGCAACCCCAAAAAGTT 2016 Query 6555 GAGACCAGAAACGATTAGCCGTGA 6578 | ||||| ||||| ||||| |||| Sbjct 2017 GGGACCAAAAACGGTTAGCGGTGA 2040 >seq15824 Length=139560 Score = 127 bits (140), Expect = 3e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 6719 CCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAG 6778 |||||||||||||| | ||| ||||||| || || || || || | || || | ||| Sbjct 61117 CCCATCATATGAAAAGAGTTCTGCGTCCAATTATGAAACCCTTGAAAAAATAGGATGAAT 61176 Query 6779 CGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGA 6838 || || || ||||| |||||||| |||||||||||||||| || || | || ||| Sbjct 61177 CGAAAAATAGCTGCTACACCAAAACTAGGCGCAAAGAACCAACCAGATTGATCTAGTGGA 61236 Query 6839 TACATGAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAG 6898 || || || || ||||| ||||| |||||||| || || || || || |||||||| || Sbjct 61237 TAAATTAGGAATACAGAAACAAAAACAGCAATTGGGCCCGAGAATGCTATTGCATTATAA 61296 Query 6899 GGACG 6903 || || Sbjct 61297 GGGCG 61301 >seq12771 Length=31889 Score = 107 bits (118), Expect = 2e-18 Identities = 170/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 6719 CCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAG 6778 |||||||||||||| ||||| | |||||| || || || || | | ||||| | | | Sbjct 8370 CCCATCATATGAAAAGGGTTCAACGTCCAATTATGAAACCCTCGAAAAAAGAGGATGGAT 8429 Query 6779 CGGAATATCGCTGCAACA----CCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAG 6834 || || || | ||| ||| ||||| |||||||||||||||| || || | || Sbjct 8430 CGAAAAATAGTTGCTACATACACCAAAACTAGGCGCAAAGAACCAACCAGATTGATCTAG 8489 Query 6835 AGGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATT 6894 ||||| || || || ||||| ||||| ||| |||| | || || || || |||||||| Sbjct 8490 TGGATAAATTAGGAATACAGAAACAAAAACAACAATTTGGCCCGAGAATGCTATTGCATT 8549 Query 6895 GTAGGGACGAATACCGACTAGA-CGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAA 6953 || || || | | || ||| || || | || || || || | ||| |||||||| | Sbjct 8550 ATAAGGGCGCA-ATTGAACAGATCGAGCAAGTTCGAATTGGCGTAACATAAAACCTATTA 8608 Query 6954 G 6954 | Sbjct 8609 G 8609 >seq15982 Length=164312 Score = 93.3 bits (102), Expect = 5e-14 Identities = 189/277 (68%), Gaps = 23/277 (8%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCA-ATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATC 6321 |||||||| || | || | | ||||| |||| |||| || ||||||||| || ||||| Sbjct 21655 AGAGCGTTTCCACAGGGTAGAGCCTTCT-CAGGGAATATAAGGTTTTCATGAGGCTGATC 21597 Query 6322 CACTGGTGCCATCCAGGCACGTAGA---------CCTTCATTCAATAGGATGTTCTTGGT 6372 | |||||||| ||||| | | |||||||| | || || || |||| Sbjct 21596 TTGAGCCGCCATCCAAGCACGAATAACCTGAATACCTTCATTGAG-AGAATATTTCTGGT 21538 Query 6373 ATAGAACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATA 6432 ||||| ||||| || | ||||| || ||||| | | | ||||| ||||| |||||||| Sbjct 21537 GTAGAAAGTCTCAAATTTAGGATCTTCAGCTGCAC-GTTATCTTGGGAAACGAAGTCATA 21479 Query 6433 AGCTCTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGG-----TCCAAAGACCC 6487 || | ||||| |||| |||| || || | |||| |||| | ||| Sbjct 21478 GGCACGTAGGTT-----CAAGGCCAAACCGACTAACTCAAGAGCACTCATCCATAAACCG 21424 Query 6488 ATAACAGGAACAAACAGCATAAAGAAATGTAGCCAAC 6524 | | || ||||||| |||||||||||||| |||| Sbjct 21423 GTTATTGGTACAAACAACATAAAGAAATGTAATCAAC 21387 >seq14024 Length=49420 Score = 93.3 bits (102), Expect = 5e-14 Identities = 234/353 (66%), Gaps = 7/353 (2%) Strand=Plus/Minus Query 6929 AACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCAT 6988 || || || | ||| | |||||| || | || || || || || || ||||||| ||| Sbjct 34988 AATTGGCGTAACATAAGACCTATTAGTCCGAAAGCACCATGAAGAGCAACAAAAGTCCAC 34929 Query 6989 AGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGA 7048 | || || | ||| |||| || ||||| || || ||||| |||||||| | | Sbjct 34928 TGGCCGCCTAATTGACGCCAACGAGTAAAATCGCCTTGTGCTTCAGGACCCCACAACAAC 34869 Query 7049 AGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACAT 7108 | | || ||| | | | | ||||||||| || | || || | |||||| || Sbjct 34868 AACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAATCGATTGCGGTTAAGAAATTGCAG 34809 Query 7109 CCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGTTGTGCCC 7168 || || | ||| ||| || ||||| ||||| ||||| || || || || || || Sbjct 34808 CCTTCCAAATATGAACTGGCCATCCCATGAGTATACCATGAAGTTACAAACGTCGTACCT 34749 Query 7169 GTGAG-----CCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGACC 7223 || | |||||| || | || | |||||| ||| || || | ||||| ||| Sbjct 34748 GTAAATTAAACCAACCCCCTACAGCAAAATAAGCACAAGGAAAGAGCAATAGACCCGACT 34689 Query 7224 AACCAACAAAAACGAACCTATCAC-GCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||| ||||||||||| ||| | | ||| ||||||||| | | |||||| Sbjct 34688 AACCTACAAAAACGAAATGATCTCTACGTAA-CCAGTCATCCATAATATCAAA 34637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621774170462720