Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq16048 111 2e-19 seq15946 111 2e-19 seq11586 111 2e-19 seq16162 87.8 2e-12 seq13639 84.2 3e-11 seq13658 82.4 9e-11 seq13599 82.4 9e-11 >seq16048 Length=246288 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| |||||||||||||| || ||||||||||| |||||| | || Sbjct 204511 AGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCC 204452 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| || || ||||| || | ||| |||||||| || || ||||| ||||| || Sbjct 204451 CGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATAT 204392 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA 127677 |||||| |||||||| || || | | | ||| ||||| Sbjct 204391 CCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA 204353 >seq15946 Length=172941 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| |||||||||||||| || ||||||||||| |||||| | || Sbjct 58576 AGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCC 58517 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| || || ||||| || | ||| |||||||| || || ||||| ||||| || Sbjct 58516 CGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATAT 58457 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA 127677 |||||| |||||||| || || | | | ||| ||||| Sbjct 58456 CCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA 58418 >seq11586 Length=26096 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| |||||||||||||| || ||||||||||| |||||| | || Sbjct 4334 AGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCC 4275 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| || || ||||| || | ||| |||||||| || || ||||| ||||| || Sbjct 4274 CGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATAT 4215 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA 127677 |||||| |||||||| || || | | | ||| ||||| Sbjct 4214 CCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA 4176 >seq16162 Length=245457 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 116655 CTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTG 116713 |||||| || ||||| || | |||||||||| |||| |||| |||| || ||||| | Sbjct 41742 CTCGTAATTAGTGTAAAGCACTTCAAACTCTTTACCC-CAGCAGTCTGCAAGACCTGGGG 41684 Query 116714 CCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 116773 ||| | ||||| || | |||||||||||| | | | ||||| || |||||| || | Sbjct 41683 CCTCGTTAGGACAAAACAAGGACCATTGACCATCATTTTGAACCCTCTCCATGAACAGAT 41624 Query 116774 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGA 116805 | || | ||| || || | |||||||| ||| Sbjct 41623 CAGGCACCCAAAGAGCAAAAAAGAGATCACGA 41592 >seq13639 Length=40771 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||||||||||||||||||||| | ||||| ||||| || || | || || ||| || Sbjct 21557 GAAGCCATCCATCTCAGTCAACAACTGATTAATGGTCTGCTCTCTCTCGTCGTTCCCGC- 21615 Query 12851 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 || ||| || || | | ||| ||||||| || |||||||||||||| || ||||| Sbjct 21616 CAC-CCATTCCAGCTCCTCTTTGTCTACCGACTGCATCAATTTCGTCAATAAACACGATG 21674 Query 12909 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 ||||| || || | | || ||||| | || | |||||| | || || || || Sbjct 21675 CACGG-TGCCTTACTCTTTGCTTTCTCAAACAAGTCCCTCACTCTGCTCGCCCCAACCCC 21733 Query 12968 CACAAACATCTCCACAAA 12985 || |||| ||| ||||| Sbjct 21734 AACGAACAACTCTACAAA 21751 >seq13658 Length=94377 Score = 82.4 bits (90), Expect = 9e-11 Identities = 212/319 (66%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811 ||| ||||| |||| |||| | || || | | || || || ||||||||||| | Sbjct 62829 GTTAGTCGCAGCGACTACAATAACACCGGTGTTGCCCTCAAAACCGTCCATCTCAGTGAG 62888 Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA---CCCGCACTGCG 12868 || ||||| | || ||||| | || |||||| | |||| || | || | Sbjct 62889 AAGCTGATTCAGCGTCTGTTCCCTCTCGTCATTCCCTCC---ACCAATTCCAGTACCCCT 62945 Query 12869 TTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGC 12928 || | || || || |||||||| |||| || || || ||||| |||||| || Sbjct 62946 CTGTCTCCCTACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGC 63005 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 || || | ||| ||||||| ||||| ||||| ||||||||||| ||||| | Sbjct 63006 CTTTTTGAAAAGATCACGCACTCGAGAAGCACCCACACCAACAAACATCTCGACAAATTC 63065 Query 12989 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 || | ||| || | || ||| || || | ||| || || ||||| || |||| Sbjct 63066 GGAACCAGAA-ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGA 63124 Query 13048 GGGTCTTCCCCGTCCCTGG 13066 ||||||| || |||||||| Sbjct 63125 GGGTCTTTCCAGTCCCTGG 63143 >seq13599 Length=79719 Score = 82.4 bits (90), Expect = 9e-11 Identities = 212/319 (66%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811 ||| ||||| |||| |||| | || || | | || || || ||||||||||| | Sbjct 37238 GTTAGTCGCAGCGACTACAATAACACCGGTGTTGCCCTCAAACCCGTCCATCTCAGTGAG 37179 Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA---CCCGCACTGCG 12868 || ||||| | || ||||| | || || ||| | |||| || | || | Sbjct 37178 AAGCTGATTCAGCGTCTGTTCCCTCTCGTCGTTCCCTCC---ACCAATTCCAGTACCCCT 37122 Query 12869 TTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGC 12928 || | || || || |||||||| |||| || || || ||||| |||||| || Sbjct 37121 CTGTCTCCCTACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGC 37062 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 || || | ||| ||||||| |||||| ||||| ||||||||||| ||||| | Sbjct 37061 CTTTTTGAAAAGATCACGCACTCGAGAGGCACCCACACCAACAAACATCTCGACAAATTC 37002 Query 12989 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 || | ||| || | || ||| || || | ||| || || ||||| || |||| Sbjct 37001 GGAACCAGAA-ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGA 36943 Query 13048 GGGTCTTCCCCGTCCCTGG 13066 ||||||| || |||||||| Sbjct 36942 GGGTCTTTCCAGTCCCTGG 36924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613161427342080