Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 170 3e-37
seq15946 170 3e-37
seq11586 170 3e-37
>seq16048
Length=246288
Score = 170 bits (188), Expect = 3e-37
Identities = 303/439 (69%), Gaps = 11/439 (3%)
Strand=Plus/Minus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
|||||| || ||||| ||||| |||| || || || | ||||| | | || |||||
Sbjct 204784 CTTCTCAAAGAAGTTTGTCTTCCCCTGCAACGAAATCAACTCCATCCAATCAAACGGGTT 204725
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| |||| ||| |||| | | || || || ||| |||||||||||||||||| ||
Sbjct 204724 CGTCACACCATACTCCTTCCCACAACCAAGCGCACCCAACAACCTGTCTGCCACAAACTC 204665
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
|||||||| || ||| || | ||| ||||| | | | ||||||||| || |
Sbjct 204664 GATGTAGCGACTCATTAAATCCCCGTTCATCCCAACTAACGCGCAGGGGAGCGCGTCACA 204605
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACG---TTCGTA 159885
| ||||||| |||||||||| ||||| || ||||||| | ||||| |||
Sbjct 204604 GACAAACTCCCTCTCAATCTCCACCGCCTCTCGAACAATCTCCTTCACACGCTCCTCGCT 204545
Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945
| | ||| ||| | || ||| || || |||||||||||||| || ||
Sbjct 204544 CACTTTCTTCTTCAACAGCGAGT------ACAAAAGACAAGCAAAGTCGCAGTGAAGACC 204491
Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005
|||||| ||||| |||| || || || | | | | |||||||| | |||||| |||
Sbjct 204490 CTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCCGGCATAAGTCCACGCTTTTT 204431
Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAACG 160064
||||||||||| | |||| || | || |||| || |||||||| || |||||| |
Sbjct 204430 AAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGAATATCCCCTCGACACACGCAAAAG 204372
Query 160065 CCACGAGCCTCTCACCAAA 160083
| | | ||||||| ||||
Sbjct 204371 CGATAATCCTCTCAGCAAA 204353
>seq15946
Length=172941
Score = 170 bits (188), Expect = 3e-37
Identities = 303/439 (69%), Gaps = 11/439 (3%)
Strand=Plus/Minus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
|||||| || ||||| ||||| |||| || || || | ||||| | | || |||||
Sbjct 58849 CTTCTCAAAGAAGTTTGTCTTCCCCTGCAACGAAATCAACTCCATCCAATCAAACGGGTT 58790
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| |||| ||| |||| | | || || || ||| |||||||||||||||||| ||
Sbjct 58789 CGTCACACCATACTCCTTCCCACAACCAAGCGCACCCAACAACCTGTCTGCCACAAACTC 58730
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
|||||||| || ||| || | ||| ||||| | | | ||||||||| || |
Sbjct 58729 GATGTAGCGACTCATTAAATCCCCGTTCATCCCAACTAACGCGCAGGGGAGCGCGTCACA 58670
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACG---TTCGTA 159885
| ||||||| |||||||||| ||||| || ||||||| | ||||| |||
Sbjct 58669 GACAAACTCCCTCTCAATCTCCACCGCCTCTCGAACAATCTCCTTCACACGCTCCTCGCT 58610
Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945
| | ||| ||| | || ||| || || |||||||||||||| || ||
Sbjct 58609 CACTTTCTTCTTCAACAGCGAGT------ACAAAAGACAAGCAAAGTCGCAGTGAAGACC 58556
Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005
|||||| ||||| |||| || || || | | | | |||||||| | |||||| |||
Sbjct 58555 CTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCCGGCATAAGTCCACGCTTTTT 58496
Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAACG 160064
||||||||||| | |||| || | || |||| || |||||||| || |||||| |
Sbjct 58495 AAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGAATATCCCCTCGACACACGCAAAAG 58437
Query 160065 CCACGAGCCTCTCACCAAA 160083
| | | ||||||| ||||
Sbjct 58436 CGATAATCCTCTCAGCAAA 58418
>seq11586
Length=26096
Score = 170 bits (188), Expect = 3e-37
Identities = 303/439 (69%), Gaps = 11/439 (3%)
Strand=Plus/Minus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
|||||| || ||||| ||||| |||| || || || | ||||| | | || |||||
Sbjct 4607 CTTCTCAAAGAAGTTTGTCTTCCCCTGCAACGAAATCAACTCCATCCAATCAAACGGGTT 4548
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| |||| ||| |||| | | || || || ||| |||||||||||||||||| ||
Sbjct 4547 CGTCACACCATACTCCTTCCCACAACCAAGCGCACCCAACAACCTGTCTGCCACAAACTC 4488
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
|||||||| || ||| || | ||| ||||| | | | ||||||||| || |
Sbjct 4487 GATGTAGCGACTCATTAAATCCCCGTTCATCCCAACTAACGCGCAGGGGAGCGCGTCACA 4428
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACG---TTCGTA 159885
| ||||||| |||||||||| ||||| || ||||||| | ||||| |||
Sbjct 4427 GACAAACTCCCTCTCAATCTCCACCGCCTCTCGAACAATCTCCTTCACACGCTCCTCGCT 4368
Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945
| | ||| ||| | || ||| || || |||||||||||||| || ||
Sbjct 4367 CACTTTCTTCTTCAACAGCGAGT------ACAAAAGACAAGCAAAGTCGCAGTGAAGACC 4314
Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005
|||||| ||||| |||| || || || | | | | |||||||| | |||||| |||
Sbjct 4313 CTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCCGGCATAAGTCCACGCTTTTT 4254
Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAACG 160064
||||||||||| | |||| || | || |||| || |||||||| || |||||| |
Sbjct 4253 AAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGAATATCCCCTCGACACACGCAAAAG 4195
Query 160065 CCACGAGCCTCTCACCAAA 160083
| | | ||||||| ||||
Sbjct 4194 CGATAATCCTCTCAGCAAA 4176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794707050529280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |