Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq16048 170 3e-37 seq15946 170 3e-37 seq11586 170 3e-37 >seq16048 Length=246288 Score = 170 bits (188), Expect = 3e-37 Identities = 303/439 (69%), Gaps = 11/439 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||| ||||| |||| || || || | ||||| | | || ||||| Sbjct 204784 CTTCTCAAAGAAGTTTGTCTTCCCCTGCAACGAAATCAACTCCATCCAATCAAACGGGTT 204725 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | |||| ||| |||| | | || || || ||| |||||||||||||||||| || Sbjct 204724 CGTCACACCATACTCCTTCCCACAACCAAGCGCACCCAACAACCTGTCTGCCACAAACTC 204665 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||||| || ||| || | ||| ||||| | | | ||||||||| || | Sbjct 204664 GATGTAGCGACTCATTAAATCCCCGTTCATCCCAACTAACGCGCAGGGGAGCGCGTCACA 204605 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACG---TTCGTA 159885 | ||||||| |||||||||| ||||| || ||||||| | ||||| ||| Sbjct 204604 GACAAACTCCCTCTCAATCTCCACCGCCTCTCGAACAATCTCCTTCACACGCTCCTCGCT 204545 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 | | ||| ||| | || ||| || || |||||||||||||| || || Sbjct 204544 CACTTTCTTCTTCAACAGCGAGT------ACAAAAGACAAGCAAAGTCGCAGTGAAGACC 204491 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 |||||| ||||| |||| || || || | | | | |||||||| | |||||| ||| Sbjct 204490 CTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCCGGCATAAGTCCACGCTTTTT 204431 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAACG 160064 ||||||||||| | |||| || | || |||| || |||||||| || |||||| | Sbjct 204430 AAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGAATATCCCCTCGACACACGCAAAAG 204372 Query 160065 CCACGAGCCTCTCACCAAA 160083 | | | ||||||| |||| Sbjct 204371 CGATAATCCTCTCAGCAAA 204353 >seq15946 Length=172941 Score = 170 bits (188), Expect = 3e-37 Identities = 303/439 (69%), Gaps = 11/439 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||| ||||| |||| || || || | ||||| | | || ||||| Sbjct 58849 CTTCTCAAAGAAGTTTGTCTTCCCCTGCAACGAAATCAACTCCATCCAATCAAACGGGTT 58790 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | |||| ||| |||| | | || || || ||| |||||||||||||||||| || Sbjct 58789 CGTCACACCATACTCCTTCCCACAACCAAGCGCACCCAACAACCTGTCTGCCACAAACTC 58730 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||||| || ||| || | ||| ||||| | | | ||||||||| || | Sbjct 58729 GATGTAGCGACTCATTAAATCCCCGTTCATCCCAACTAACGCGCAGGGGAGCGCGTCACA 58670 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACG---TTCGTA 159885 | ||||||| |||||||||| ||||| || ||||||| | ||||| ||| Sbjct 58669 GACAAACTCCCTCTCAATCTCCACCGCCTCTCGAACAATCTCCTTCACACGCTCCTCGCT 58610 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 | | ||| ||| | || ||| || || |||||||||||||| || || Sbjct 58609 CACTTTCTTCTTCAACAGCGAGT------ACAAAAGACAAGCAAAGTCGCAGTGAAGACC 58556 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 |||||| ||||| |||| || || || | | | | |||||||| | |||||| ||| Sbjct 58555 CTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCCGGCATAAGTCCACGCTTTTT 58496 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAACG 160064 ||||||||||| | |||| || | || |||| || |||||||| || |||||| | Sbjct 58495 AAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGAATATCCCCTCGACACACGCAAAAG 58437 Query 160065 CCACGAGCCTCTCACCAAA 160083 | | | ||||||| |||| Sbjct 58436 CGATAATCCTCTCAGCAAA 58418 >seq11586 Length=26096 Score = 170 bits (188), Expect = 3e-37 Identities = 303/439 (69%), Gaps = 11/439 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||| ||||| |||| || || || | ||||| | | || ||||| Sbjct 4607 CTTCTCAAAGAAGTTTGTCTTCCCCTGCAACGAAATCAACTCCATCCAATCAAACGGGTT 4548 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | |||| ||| |||| | | || || || ||| |||||||||||||||||| || Sbjct 4547 CGTCACACCATACTCCTTCCCACAACCAAGCGCACCCAACAACCTGTCTGCCACAAACTC 4488 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||||| || ||| || | ||| ||||| | | | ||||||||| || | Sbjct 4487 GATGTAGCGACTCATTAAATCCCCGTTCATCCCAACTAACGCGCAGGGGAGCGCGTCACA 4428 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACG---TTCGTA 159885 | ||||||| |||||||||| ||||| || ||||||| | ||||| ||| Sbjct 4427 GACAAACTCCCTCTCAATCTCCACCGCCTCTCGAACAATCTCCTTCACACGCTCCTCGCT 4368 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 | | ||| ||| | || ||| || || |||||||||||||| || || Sbjct 4367 CACTTTCTTCTTCAACAGCGAGT------ACAAAAGACAAGCAAAGTCGCAGTGAAGACC 4314 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 |||||| ||||| |||| || || || | | | | |||||||| | |||||| ||| Sbjct 4313 CTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCCGGCATAAGTCCACGCTTTTT 4254 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAACG 160064 ||||||||||| | |||| || | || |||| || |||||||| || |||||| | Sbjct 4253 AAGCCAAAAAATCG-CGCAGAAACTCCCAGAAAAGAATATCCCCTCGACACACGCAAAAG 4195 Query 160065 CCACGAGCCTCTCACCAAA 160083 | | | ||||||| |||| Sbjct 4194 CGATAATCCTCTCAGCAAA 4176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794707050529280