Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq13853 105 5e-18 >seq13853 Length=43806 Score = 105 bits (116), Expect = 5e-18 Identities = 168/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||||| ||||| |||||||| || || || || ||||||| Sbjct 19336 CATC-CCACCACGGAGACGCAAGACCAAGTGCAAAGTCGACTCCTTCTGAATGTTATAAT 19278 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||||| || |||| || | ||| |||||| ||||||| | | ||||||||| | Sbjct 19277 CAGCCAAAGTACGACCATCCTCAAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGATCTG 19218 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGT-TTAA--TCGTCGCTACTGTGTCTGCGC 39664 ||| | ||| || || || | | |||| || |||| | |||| | ||||| | || Sbjct 19217 GGGGAATGCCCTCCTTATC-CTGAATTTTGGTCTTAACATTGTCGATG--GTGTCGGAGC 19161 Query 39665 TTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || | ||||| || || || || | ||||| |||||||||||||| Sbjct 19160 TCTCAACCTCAAGGGTAATCGTCTTTCCAGTCAGCGTTTTCACGAAGATCTGCAT 19106 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||||| |||| ||| | ||| || ||||| || ||||| |||||| Sbjct 9748 CCACCACGTAAACGCAACACCAGATGGAGAGTTGACTCCTTTTGAATGTTATAGTCGGCC 9689 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | || || || | ||||| ||||||||||| |||| || Sbjct 9688 AATGTGCGCCCATCCTCGAGCTGCTTTCCTGCGAAAATCAAACGCTGCTGGTCCGGTGGG 9629 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||| || ||||| | | ||||| | ||| | | | ||||| ||| || || Sbjct 9628 ATGCCCTCCTTGTC-CTGGATCTTTGTCTTGACGTTGTCGATGGTGTCGCTGCTCTCAAC 9570 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || || || ||||| || || ||||| || |||||||| Sbjct 9569 CTCGAGAGTGATGGTCTTCCCCGTCAAGGTCTTTACAAAAATCTGCAT 9522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347178716931104