Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq13658 125 9e-24
seq16048 114 2e-20
seq15946 114 2e-20
seq13599 114 2e-20
seq11586 114 2e-20
>seq13658
Length=94377
Score = 125 bits (138), Expect = 9e-24
Identities = 331/498 (66%), Gaps = 18/498 (4%)
Strand=Plus/Plus
Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944
|| ||||| ||||| || | | || || |||||| || || | | || || ||
Sbjct 62779 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 62838
Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004
|||| |||| || ||| || | | |||||||| |||||||| || | |||||| ||
Sbjct 62839 GCGACTACAATAACACCGGTGTTGCCCTCAAAACCGTCCATCTCAGTGAGAAGCTGATTC 62898
Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 16061
| || ||||||| || |||||| || |||| |||| || | || | ||
Sbjct 62899 AGCGTCTGTTCCCTCTCGTCATTCCCTCC---ACCAATTCCAGTACCCCTCTGTCTCCCT 62955
Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 16121
|| |||||||| ||||||| ||||| ||||| || |||||| || || ||
Sbjct 62956 ACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTTTGAAA 63015
Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181
||||| || || || || |||||||||||||||||||| ||||| | | | |||
Sbjct 63016 AGATCACGCACTCGAGAAGCACCCACACCAACAAACATCTCGACAAATTCGGAACCAGAA 63075
Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240
|| | || ||| || ||| | ||| || |||||||| || || || ||||| ||
Sbjct 63076 -ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCTTTCC 63134
Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT- 16299
|| ||||| || | || || ||||| ||||| || ||| | ||||
Sbjct 63135 AGTCCCTGGAGGGCCGACAAGAAGAACACCTTTAGGAATGCGAGCTCCA--ACAGAAGTA 63192
Query 16300 -ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCC---AATTCATCTTTGGCGGCG 16355
| |||||||||| |||||| || || || | ||||| || || | ||| || |
Sbjct 63193 AACCTCTCAGGTTTCTTAAGGAATTCGAC---CACTTCCATGAAATCCTGTTTTGCTTCA 63249
Query 16356 TCAATCCCCTCAACATCG 16373
|||| || ||||||||
Sbjct 63250 TCAACACCAGCAACATCG 63267
>seq16048
Length=246288
Score = 114 bits (126), Expect = 2e-20
Identities = 151/209 (72%), Gaps = 9/209 (4%)
Strand=Plus/Plus
Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA---CAAAGTCGCGTTCCTTTGCTGAG 102182
||||| ||||||||||| || ||| ||||| | || || |||||||||
Sbjct 204308 AAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACG------TTTGCTGAG 204361
Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242
| | |||| ||||||||||| ||||| || ||||| ||||| |||||||| |||
Sbjct 204362 AGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATT 204421
Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302
| |||||| || ||||| || || ||||| || | |||||| || || || || |||
Sbjct 204422 TTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCATTTCT 204481
Query 102303 CGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||||||||||| || ||| || |||||
Sbjct 204482 CGTGACGAGGGTCTTCACTGCGACTTTGC 204510
>seq15946
Length=172941
Score = 114 bits (126), Expect = 2e-20
Identities = 151/209 (72%), Gaps = 9/209 (4%)
Strand=Plus/Plus
Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA---CAAAGTCGCGTTCCTTTGCTGAG 102182
||||| ||||||||||| || ||| ||||| | || || |||||||||
Sbjct 58373 AAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACG------TTTGCTGAG 58426
Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242
| | |||| ||||||||||| ||||| || ||||| ||||| |||||||| |||
Sbjct 58427 AGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATT 58486
Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302
| |||||| || ||||| || || ||||| || | |||||| || || || || |||
Sbjct 58487 TTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCATTTCT 58546
Query 102303 CGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||||||||||| || ||| || |||||
Sbjct 58547 CGTGACGAGGGTCTTCACTGCGACTTTGC 58575
>seq13599
Length=79719
Score = 114 bits (126), Expect = 2e-20
Identities = 249/369 (67%), Gaps = 8/369 (2%)
Strand=Plus/Minus
Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944
|| ||||| ||||| || | | || || |||||| || || | | || || ||
Sbjct 37288 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 37229
Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004
|||| |||| || ||| || | | ||||| || |||||||| || | |||||| ||
Sbjct 37228 GCGACTACAATAACACCGGTGTTGCCCTCAAACCCGTCCATCTCAGTGAGAAGCTGATTC 37169
Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 16061
| || ||||||| || || ||| || |||| |||| || | || | ||
Sbjct 37168 AGCGTCTGTTCCCTCTCGTCGTTCCCTCC---ACCAATTCCAGTACCCCTCTGTCTCCCT 37112
Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 16121
|| |||||||| ||||||| ||||| ||||| || |||||| || || ||
Sbjct 37111 ACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTTTGAAA 37052
Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181
||||| || || || ||| |||||||||||||||||||| ||||| | | | |||
Sbjct 37051 AGATCACGCACTCGAGAGGCACCCACACCAACAAACATCTCGACAAATTCGGAACCAGAA 36992
Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240
|| | || ||| || ||| | ||| || |||||||| || || || ||||| ||
Sbjct 36991 -ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCTTTCC 36933
Query 16241 CGTACCTGG 16249
|| |||||
Sbjct 36932 AGTCCCTGG 36924
>seq11586
Length=26096
Score = 114 bits (126), Expect = 2e-20
Identities = 151/209 (72%), Gaps = 9/209 (4%)
Strand=Plus/Plus
Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA---CAAAGTCGCGTTCCTTTGCTGAG 102182
||||| ||||||||||| || ||| ||||| | || || |||||||||
Sbjct 4131 AAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACG------TTTGCTGAG 4184
Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242
| | |||| ||||||||||| ||||| || ||||| ||||| |||||||| |||
Sbjct 4185 AGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATT 4244
Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302
| |||||| || ||||| || || ||||| || | |||||| || || || || |||
Sbjct 4245 TTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCATTTCT 4304
Query 102303 CGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||||||||||| || ||| || |||||
Sbjct 4305 CGTGACGAGGGTCTTCACTGCGACTTTGC 4333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620392549583360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |