Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq13658 125 9e-24 seq16048 114 2e-20 seq15946 114 2e-20 seq13599 114 2e-20 seq11586 114 2e-20 >seq13658 Length=94377 Score = 125 bits (138), Expect = 9e-24 Identities = 331/498 (66%), Gaps = 18/498 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| ||||| || | | || || |||||| || || | | || || || Sbjct 62779 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 62838 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 |||| |||| || ||| || | | |||||||| |||||||| || | |||||| || Sbjct 62839 GCGACTACAATAACACCGGTGTTGCCCTCAAAACCGTCCATCTCAGTGAGAAGCTGATTC 62898 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 16061 | || ||||||| || |||||| || |||| |||| || | || | || Sbjct 62899 AGCGTCTGTTCCCTCTCGTCATTCCCTCC---ACCAATTCCAGTACCCCTCTGTCTCCCT 62955 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 16121 || |||||||| ||||||| ||||| ||||| || |||||| || || || Sbjct 62956 ACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTTTGAAA 63015 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || || || |||||||||||||||||||| ||||| | | | ||| Sbjct 63016 AGATCACGCACTCGAGAAGCACCCACACCAACAAACATCTCGACAAATTCGGAACCAGAA 63075 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 || | || ||| || ||| | ||| || |||||||| || || || ||||| || Sbjct 63076 -ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCTTTCC 63134 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT- 16299 || ||||| || | || || ||||| ||||| || ||| | |||| Sbjct 63135 AGTCCCTGGAGGGCCGACAAGAAGAACACCTTTAGGAATGCGAGCTCCA--ACAGAAGTA 63192 Query 16300 -ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCC---AATTCATCTTTGGCGGCG 16355 | |||||||||| |||||| || || || | ||||| || || | ||| || | Sbjct 63193 AACCTCTCAGGTTTCTTAAGGAATTCGAC---CACTTCCATGAAATCCTGTTTTGCTTCA 63249 Query 16356 TCAATCCCCTCAACATCG 16373 |||| || |||||||| Sbjct 63250 TCAACACCAGCAACATCG 63267 >seq16048 Length=246288 Score = 114 bits (126), Expect = 2e-20 Identities = 151/209 (72%), Gaps = 9/209 (4%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA---CAAAGTCGCGTTCCTTTGCTGAG 102182 ||||| ||||||||||| || ||| ||||| | || || ||||||||| Sbjct 204308 AAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACG------TTTGCTGAG 204361 Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242 | | |||| ||||||||||| ||||| || ||||| ||||| |||||||| ||| Sbjct 204362 AGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATT 204421 Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302 | |||||| || ||||| || || ||||| || | |||||| || || || || ||| Sbjct 204422 TTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCATTTCT 204481 Query 102303 CGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||| || ||| || ||||| Sbjct 204482 CGTGACGAGGGTCTTCACTGCGACTTTGC 204510 >seq15946 Length=172941 Score = 114 bits (126), Expect = 2e-20 Identities = 151/209 (72%), Gaps = 9/209 (4%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA---CAAAGTCGCGTTCCTTTGCTGAG 102182 ||||| ||||||||||| || ||| ||||| | || || ||||||||| Sbjct 58373 AAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACG------TTTGCTGAG 58426 Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242 | | |||| ||||||||||| ||||| || ||||| ||||| |||||||| ||| Sbjct 58427 AGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATT 58486 Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302 | |||||| || ||||| || || ||||| || | |||||| || || || || ||| Sbjct 58487 TTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCATTTCT 58546 Query 102303 CGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||| || ||| || ||||| Sbjct 58547 CGTGACGAGGGTCTTCACTGCGACTTTGC 58575 >seq13599 Length=79719 Score = 114 bits (126), Expect = 2e-20 Identities = 249/369 (67%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| ||||| || | | || || |||||| || || | | || || || Sbjct 37288 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 37229 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 |||| |||| || ||| || | | ||||| || |||||||| || | |||||| || Sbjct 37228 GCGACTACAATAACACCGGTGTTGCCCTCAAACCCGTCCATCTCAGTGAGAAGCTGATTC 37169 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 16061 | || ||||||| || || ||| || |||| |||| || | || | || Sbjct 37168 AGCGTCTGTTCCCTCTCGTCGTTCCCTCC---ACCAATTCCAGTACCCCTCTGTCTCCCT 37112 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 16121 || |||||||| ||||||| ||||| ||||| || |||||| || || || Sbjct 37111 ACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTTTGAAA 37052 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || || ||| |||||||||||||||||||| ||||| | | | ||| Sbjct 37051 AGATCACGCACTCGAGAGGCACCCACACCAACAAACATCTCGACAAATTCGGAACCAGAA 36992 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 || | || ||| || ||| | ||| || |||||||| || || || ||||| || Sbjct 36991 -ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCTTTCC 36933 Query 16241 CGTACCTGG 16249 || ||||| Sbjct 36932 AGTCCCTGG 36924 >seq11586 Length=26096 Score = 114 bits (126), Expect = 2e-20 Identities = 151/209 (72%), Gaps = 9/209 (4%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA---CAAAGTCGCGTTCCTTTGCTGAG 102182 ||||| ||||||||||| || ||| ||||| | || || ||||||||| Sbjct 4131 AAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGGTTCTGAGACG------TTTGCTGAG 4184 Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242 | | |||| ||||||||||| ||||| || ||||| ||||| |||||||| ||| Sbjct 4185 AGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTCTGCGCGATT 4244 Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302 | |||||| || ||||| || || ||||| || | |||||| || || || || ||| Sbjct 4245 TTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAACTCATTTCT 4304 Query 102303 CGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||| || ||| || ||||| Sbjct 4305 CGTGACGAGGGTCTTCACTGCGACTTTGC 4333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620392549583360