Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq16048 102 1e-16 seq15946 102 1e-16 seq13658 102 1e-16 seq13599 102 1e-16 seq11586 102 1e-16 seq16162 89.7 6e-13 seq16265 84.2 3e-11 seq16176 82.4 9e-11 >seq16048 Length=246288 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || || ||||| ||||| ||||| |||| | || ||||| ||||| Sbjct 204498 TGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCCGGCATAAGTCCA 204439 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | || || |||||||| || || || ||||| ||||||||||| || ||||| ||||| Sbjct 204438 CGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATCCCCTCGACACAC 204379 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 || ||||||| | | ||||||||| Sbjct 204378 GCAAAAGCGATAATCCTCTCAGCAAA 204353 >seq15946 Length=172941 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || || ||||| ||||| ||||| |||| | || ||||| ||||| Sbjct 58563 TGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCCGGCATAAGTCCA 58504 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | || || |||||||| || || || ||||| ||||||||||| || ||||| ||||| Sbjct 58503 CGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATCCCCTCGACACAC 58444 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 || ||||||| | | ||||||||| Sbjct 58443 GCAAAAGCGATAATCCTCTCAGCAAA 58418 >seq13658 Length=94377 Score = 102 bits (112), Expect = 1e-16 Identities = 248/373 (66%), Gaps = 16/373 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || |||||||| || | | |||||| ||||||||| ||| | | ||| || || Sbjct 62779 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 62838 Query 11563 GCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || ||||||||| || ||| || ||||||||||| || ||||||||||| Sbjct 62839 GC---GACTACAATAACACCGGTGTTGCCCTCAAAACCGTCCATCTCAGTGAGAAGCTGA 62895 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCAT--ACCACCTGCCGAACGCTTCT--- 11674 || | ||||||||| | ||| || || | | |||| | | | || | ||| Sbjct 62896 TTCAGCGTCTGTTCCCTCTCGTCATT-----CCCTCCACCAATTCCAGTACCCCTCTGTC 62950 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 | || ||||| ||||| ||||| | || || || ||||| || | |||| || Sbjct 62951 TCCCTACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTT 63010 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 |||||| ||||| || || || || ||||| || |||||||| || || | | Sbjct 63011 TGAAAAGATCACGCACTCGAGAAGCACCCACACCAACAAACATCTCGACAAATTCGGAAC 63070 Query 11795 CAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 ||||| | | ||| |||||| | || ||||| ||||| || ||||| |||| Sbjct 63071 CAGAAATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCT 63130 Query 11855 TACCCGTACCAGG 11867 | || || || || Sbjct 63131 TTCCAGTCCCTGG 63143 >seq13599 Length=79719 Score = 102 bits (112), Expect = 1e-16 Identities = 248/373 (66%), Gaps = 16/373 (4%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || |||||||| || | | |||||| ||||||||| ||| | | ||| || || Sbjct 37288 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 37229 Query 11563 GCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || ||||||||| || ||| || || |||||||| || ||||||||||| Sbjct 37228 GC---GACTACAATAACACCGGTGTTGCCCTCAAACCCGTCCATCTCAGTGAGAAGCTGA 37172 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCAT--ACCACCTGCCGAACGCTTCT--- 11674 || | ||||||||| | ||| ||||| | | |||| | | | || | ||| Sbjct 37171 TTCAGCGTCTGTTCCCTCTCGTCGTT-----CCCTCCACCAATTCCAGTACCCCTCTGTC 37117 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 | || ||||| ||||| ||||| | || || || ||||| || | |||| || Sbjct 37116 TCCCTACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTT 37057 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 |||||| ||||| || || || || ||||| || |||||||| || || | | Sbjct 37056 TGAAAAGATCACGCACTCGAGAGGCACCCACACCAACAAACATCTCGACAAATTCGGAAC 36997 Query 11795 CAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 ||||| | | ||| |||||| | || ||||| ||||| || ||||| |||| Sbjct 36996 CAGAAATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCT 36937 Query 11855 TACCCGTACCAGG 11867 | || || || || Sbjct 36936 TTCCAGTCCCTGG 36924 >seq11586 Length=26096 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || || ||||| ||||| ||||| |||| | || ||||| ||||| Sbjct 4321 TGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCCGGCATAAGTCCA 4262 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | || || |||||||| || || || ||||| ||||||||||| || ||||| ||||| Sbjct 4261 CGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATCCCCTCGACACAC 4202 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 || ||||||| | | ||||||||| Sbjct 4201 GCAAAAGCGATAATCCTCTCAGCAAA 4176 >seq16162 Length=245457 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 110770 TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGAT 110829 |||| ||| || || || ||| ||||||| ||||| ||||| || |||| |||| || Sbjct 41286 TGGTCAACGTATCGAGCAGTGTCATTGAACACCCTAAGCATCGGGGTAATACCATTTGAG 41227 Query 110830 TGACCATTTGTACCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACC 110888 ||||||||||||| ||| | || || |||||||| | ||| || || ||| Sbjct 41226 GTTCCATTTGTACCCCGAATGTAACTACCGGTT-GCACGAATATTGTGAATCGACACACC 41168 Query 110889 AATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATC 110948 ||||||||| || | || ||||| |||||||| | | |||| |||| || || || Sbjct 41167 AATACCACCAGCAGATTTGCTAATAACAGCACACTCCTTCAATGTATCATAGATTCCTTC 41108 Query 110949 AAT 110951 ||| Sbjct 41107 AAT 41105 >seq16265 Length=549659 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 222574 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGAGACC 222519 >seq16176 Length=414505 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| ||||| ||||||| |||||||| |||||||| || ||| Sbjct 228965 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGAGACCTGTT 229024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588644053126400