Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq16048 114 2e-20 seq15946 114 2e-20 seq13658 114 2e-20 seq11586 114 2e-20 seq13599 109 6e-19 seq16162 89.7 6e-13 >seq16048 Length=246288 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| || || ||||| ||||||||||||||| || || Sbjct 204510 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 204451 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || ||||| || | |||| |||| |||||||| ||| || ||||| || Sbjct 204450 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 204391 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 ||||| ||||||||||| || | || | ||| || || Sbjct 204390 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA 204353 >seq15946 Length=172941 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| || || ||||| ||||||||||||||| || || Sbjct 58575 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 58516 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || ||||| || | |||| |||| |||||||| ||| || ||||| || Sbjct 58515 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 58456 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 ||||| ||||||||||| || | || | ||| || || Sbjct 58455 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA 58418 >seq13658 Length=94377 Score = 114 bits (126), Expect = 2e-20 Identities = 249/369 (67%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| ||||| || | | || || |||||| || || | | || ||||| Sbjct 62779 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 62838 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 |||| |||| || ||| || | |||||||| |||||||| || | ||| || || Sbjct 62839 GCGACTACAATAACACCGGTGTTGCCCTCAAAACCGTCCATCTCAGTGAGAAGCTGATTC 62898 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||||| || |||||| || |||| |||| || | || | || Sbjct 62899 AGCGTCTGTTCCCTCTCGTCATTCCCTCC---ACCAATTCCAGTACCCCTCTGTCTCCCT 62955 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || |||||||| ||||||| |||||||| || || |||||| || ||| || Sbjct 62956 ACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTTTGAAA 63015 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || || | || |||||||||||||||||||| ||||| | | | ||| Sbjct 63016 AGATCACGCACTCGAGAAGCACCCACACCAACAAACATCTCGACAAATTCGGAACCAGAA 63075 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | || ||| || ||| | ||| || |||||||| || || || ||||| || Sbjct 63076 -ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCTTTCC 63134 Query 9548 CGTACCTGG 9556 || ||||| Sbjct 63135 AGTCCCTGG 63143 >seq11586 Length=26096 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| || || ||||| ||||||||||||||| || || Sbjct 4333 GCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAACCCC 4274 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || ||||| || | |||| |||| |||||||| ||| || ||||| || Sbjct 4273 GGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAATATC 4214 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 ||||| ||||||||||| || | || | ||| || || Sbjct 4213 CCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAA 4176 >seq13599 Length=79719 Score = 109 bits (120), Expect = 6e-19 Identities = 248/369 (67%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| ||||| || | | || || |||||| || || | | || ||||| Sbjct 37288 CGGTCAAAACGACCAGGCCTCAAAAGAGCAGAATCAAGAATGTCGGCTCTGTTAGTCGCA 37229 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 |||| |||| || ||| || | ||||| || |||||||| || | ||| || || Sbjct 37228 GCGACTACAATAACACCGGTGTTGCCCTCAAACCCGTCCATCTCAGTGAGAAGCTGATTC 37169 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || ||||||| || || ||| || |||| |||| || | || | || Sbjct 37168 AGCGTCTGTTCCCTCTCGTCGTTCCCTCC---ACCAATTCCAGTACCCCTCTGTCTCCCT 37112 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || |||||||| ||||||| |||||||| || || |||||| || ||| || Sbjct 37111 ACAGCATCAATTTCATCAACAAAGACAATGCACGGAGCATTTTCTTTCGCCTTTTTGAAA 37052 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || || | ||| |||||||||||||||||||| ||||| | | | ||| Sbjct 37051 AGATCACGCACTCGAGAGGCACCCACACCAACAAACATCTCGACAAATTCGGAACCAGAA 36992 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | || ||| || ||| | ||| || |||||||| || || || ||||| || Sbjct 36991 -ATCGAGAAGAACGGAACACCTGCTTCTCCAGCAATGGCCTTCGCTAGGAGGGTCTTTCC 36933 Query 9548 CGTACCTGG 9556 || ||||| Sbjct 36932 AGTCCCTGG 36924 >seq16162 Length=245457 Score = 89.7 bits (98), Expect = 6e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 106687 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTG 106745 |||||| || ||||| || |||||||||| | |||| | || ||| | |||||||| | Sbjct 41742 CTCGTAATTAGTGTAAAGCACTTCAAACTCTTTACCC-CAGCAGTCTGCAAGACCTGGGG 41684 Query 106746 CCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGT 106805 ||| || ||||| || | |||||||||||| | | | ||||| || |||||| || | Sbjct 41683 CCTCGTTAGGACAAAACAAGGACCATTGACCATCATTTTGAACCCTCTCCATGAACAGAT 41624 Query 106806 CTGGAATCCACAGGGATGAAAAGAGATC 106833 | || | ||| || | |||||||||| Sbjct 41623 CAGGCACCCAAAGAGCAAAAAAGAGATC 41596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 107226 || ||||| ||||| ||||||||||||||||| || | || ||| ||||| |||| || Sbjct 40944 TGAGGTCTCGGTGTGCCAGCATTGAAGAGGGTCGGGGAAGCATGAGTGAAC-CACCTCTG 40886 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 ||||| | |||||| | | |||| ||||| || ||| ||||| |||| || Sbjct 40885 AGACATGAAATGGTATGTTTTGATTGCAGACTCAATATCGTCCTTATGGATACCGACTGC 40826 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| ||||| | || || | |||| | | ||| | | || | | |||| Sbjct 40825 AACTCTCATCAACATATGCTGAGGCCTCTCCACAACCTTTCCA-CTAACCTTCAACAGAT 40767 Query 107346 A-GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | || |||| |||||||||| |||||| ||| || | ||| |||| || Sbjct 40766 ACGATC-TCTCGAGGGTTTTGAAACCAAAATAATCATAGTCAAAGTCACG 40718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589648286821120