Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_015283.1
Length=176428
Score E
Sequences producing significant alignments: (Bits) Value
seq15224 262 4e-65
>seq15224
Length=172684
Score = 262 bits (290), Expect = 4e-65
Identities = 294/393 (75%), Gaps = 0/393 (0%)
Strand=Plus/Plus
Query 168877 TGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCA 168936
||| |||||||| || || | || || ||| || ||| | | || ||| |||||||
Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377
Query 168937 GGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGT 168996
|| || ||||||||||||||| ||||||||||||| || |||||||||||| | ||
Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437
Query 168997 ATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTAT 169056
|||||| || ||||||||||| |||||||| || || || ||| || ||||| ||| |
Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497
Query 169057 GTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAG 169116
||||| || || ||||| || ||||||||||| | ||||| ||| | | || ||
Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557
Query 169117 AGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAAC 169176
|| || || || | |||||| || | ||||||| || |||||||| ||||||||
Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617
Query 169177 CTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTT 169236
|||||||| || || || |||| || || ||| |||| |||||||| ||||| |||||
Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677
Query 169237 CAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269
|||||| || | | | ||||||||| ||||
Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGC 89710
Score = 109 bits (120), Expect = 6e-19
Identities = 130/175 (74%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 168603 CTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATG 168662
|||| || || ||| |||| || || || | |||||||| | || ||||| | || |
Sbjct 89140 CTGC-CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACG 89198
Query 168663 GAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCT 168722
||||||| || || || ||||| || |||| |||| || || || | || || |
Sbjct 89199 GAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTT 89258
Query 168723 ACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777
| ||||| ||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 89259 ATCCAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTA 89313
Score = 100 bits (110), Expect = 3e-16
Identities = 131/182 (72%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207
||||||| || |||||||| |||||||| |||||||| || || || ||||| || ||
Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793
Query 169208 GGTAGATTAATCTTCCAGTAT------GCAAGTTTCAACAACTCAAGAAGTCTTCACTTC 169261
||| |||| |||||||| ||| || ||||||||||| || | | | ||||||
Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853
Query 169262 TTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATG 169321
||| |||| | | || || || || | ||||| || || | ||||| | || |||
Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913
Query 169322 GC 169323
||
Sbjct 89914 GC 89915
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564123480714240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |