Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq15224 262 4e-65 >seq15224 Length=172684 Score = 262 bits (290), Expect = 4e-65 Identities = 294/393 (75%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 168877 TGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCA 168936 ||| |||||||| || || | || || ||| || ||| | | || ||| ||||||| Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377 Query 168937 GGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGT 168996 || || ||||||||||||||| ||||||||||||| || |||||||||||| | || Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437 Query 168997 ATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTAT 169056 |||||| || ||||||||||| |||||||| || || || ||| || ||||| ||| | Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497 Query 169057 GTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAG 169116 ||||| || || ||||| || ||||||||||| | ||||| ||| | | || || Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557 Query 169117 AGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAAC 169176 || || || || | |||||| || | ||||||| || |||||||| |||||||| Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617 Query 169177 CTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTT 169236 |||||||| || || || |||| || || ||| |||| |||||||| ||||| ||||| Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677 Query 169237 CAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||||| || | | | ||||||||| |||| Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGC 89710 Score = 109 bits (120), Expect = 6e-19 Identities = 130/175 (74%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 168603 CTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATG 168662 |||| || || ||| |||| || || || | |||||||| | || ||||| | || | Sbjct 89140 CTGC-CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACG 89198 Query 168663 GAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCT 168722 ||||||| || || || ||||| || |||| |||| || || || | || || | Sbjct 89199 GAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTT 89258 Query 168723 ACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777 | ||||| ||||||||||| | | ||||||||||||||||||||||||||||| Sbjct 89259 ATCCAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTA 89313 Score = 100 bits (110), Expect = 3e-16 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207 ||||||| || |||||||| |||||||| |||||||| || || || ||||| || || Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 169208 GGTAGATTAATCTTCCAGTAT------GCAAGTTTCAACAACTCAAGAAGTCTTCACTTC 169261 ||| |||| |||||||| ||| || ||||||||||| || | | | |||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 169262 TTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATG 169321 ||| |||| | | || || || || | ||||| || || | ||||| | || ||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 169322 GC 169323 || Sbjct 89914 GC 89915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564123480714240