Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq11475 336 3e-87 seq15224 205 1e-47 seq8938 138 1e-27 seq12877 129 7e-25 seq14024 116 4e-21 seq15982 84.2 3e-11 >seq11475 Length=22225 Score = 336 bits (372), Expect = 3e-87 Identities = 701/1043 (67%), Gaps = 31/1043 (3%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||||| |||||||| || | || ||||||||| Sbjct 12883 TTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 12824 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | ||||||||||| | || | || |||||||| ||| || || || Sbjct 12823 CTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTTT 12764 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||||||| | ||||| || || ||| Sbjct 12763 GTAACTTCATGGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGCAATTTCTTA 12704 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 173185 || ||||| || || || |||| ||| | | || | |||| |||| || | Sbjct 12703 ACCGCAGCCGTTTCTACTCCTG-----CTAATAGTTTAGCACACTCTTTGTTGTTGCTGT 12649 Query 173186 GGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACT 173245 |||| |||||||||||||| || ||||||| ||| | || || || |||| | Sbjct 12648 GGGGTCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTT 12589 Query 173246 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCG 173305 |||| || | ||||| | || ||||| |||||||| ||| | || || || || | | Sbjct 12588 TTGTTGCTCTTCATGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTG 12529 Query 173306 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 173365 | || ||| | | ||||| || ||| | |||||||| | || || || | Sbjct 12528 CTCGATCTGTTCAATTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTT 12469 Query 173366 TCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCAT 173425 | | | || |||| || |||||||| || |||||||||| || ||| | Sbjct 12468 TTGTTTCTGTATTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTT 12409 Query 173426 TCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 173485 | ||||| ||||| || ||||| | ||| | || | ||||| || || || || Sbjct 12408 TTGGTGTAGCAGCTATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGC 12349 Query 173486 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCA 173545 |||| || ||||| |||||||| ||||| || || | || | || | ||||| || | Sbjct 12348 TGAACCCTTTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTA 12289 Query 173546 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTA 173605 |||||||||| || || |||| | | | ||| || | || ||| || Sbjct 12288 TTCATGGTGCTACCGT--AGAAAATACTTTAT---------TC-GAGGATGGTGATGG-- 12243 Query 173606 AGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTA 173665 | | || ||| | || ||| | || || || | |||||||||||| | Sbjct 12242 -------GGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 12190 Query 173666 TGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGAT 173725 || | || || ||| | || ||||| || || ||||| | || ||||| || ||| | | Sbjct 12189 TGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTT 12130 Query 173726 TTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTA 173785 ||||| ||| | ||||| || ||||| || | ||| | |||| | | || Sbjct 12129 GGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGG 12070 Query 173786 TCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAG 173845 | || ||||| || | ||||| | || || ||||| || || ||||| ||| | |||| Sbjct 12069 TAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAG 12010 Query 173846 CAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 173905 | |||||||| || || |||||||||||||| || ||||| || | ||||||||||| Sbjct 12009 CCGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTC 11950 Query 173906 GAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGT 173965 | || |||||| | || |||||| || ||||| ||| | |||| || || || || Sbjct 11949 GTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTC 11890 Query 173966 TACCAAGAGGTAACGCACTTTAA 173988 |||| | || ||||| |||||| Sbjct 11889 TACCCCGTGGAAACGCTCTTTAA 11867 >seq15224 Length=172684 Score = 205 bits (226), Expect = 1e-47 Identities = 286/400 (72%), Gaps = 1/400 (0%) Strand=Plus/Plus Query 172199 TATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCAT 172258 |||| || ||||||||||| || || |||| || ||| || ||| | | |||||| Sbjct 89312 TATGAGT-GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAA 89370 Query 172259 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTA 172318 | ||||| || || |||||||||||||| |||| || || ||||| |||||||| | Sbjct 89371 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCA 89430 Query 172319 TGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAG 172378 || | || ||||| || ||||| ||||| || ||||| || || |||||| || |||| Sbjct 89431 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAG 89490 Query 172379 CAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTC 172438 | || | || || || || |||| || ||||| ||||| || || || ||| | Sbjct 89491 CTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 89550 Query 172439 TAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAG 172498 | || || || || || ||| ||||| || | || |||| || || ||||| | Sbjct 89551 TGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGG 89610 Query 172499 AAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATG 172558 ||||||| || || || ||||| || || | ||| |||||||| | |||||||| |||| Sbjct 89611 AAGAAACTTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATG 89670 Query 172559 CTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 172598 || ||||||||| || | | | ||||||||| |||| Sbjct 89671 CTAGTTTCAACAATTCCCGTTCTTTACACTTCTTCTTAGC 89710 Score = 104 bits (114), Expect = 3e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 171937 CCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAAC 171996 || || ||| |||| || || || | ||||| ||| |||| ||| | | || || ||| Sbjct 89144 CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAAC 89203 Query 171997 AACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCT 172056 || || || |||||||| || |||| | || || ||||| | || || || || Sbjct 89204 AATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCA 89263 Query 172057 ATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGT 172111 || |||||||||||| | || ||||| ||||| || ||||||||||||||| ||| Sbjct 89264 ATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTATGAGT 89318 >seq8938 Length=12132 Score = 138 bits (152), Expect = 1e-27 Identities = 223/320 (70%), Gaps = 2/320 (1%) Strand=Plus/Minus Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || || ||| | || ||||| || | ||||| | || ||||| || ||||| | ||| Sbjct 2038 ACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGTTA 1979 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 || ||| | ||||| || ||||| || | | | | |||| | | || | || Sbjct 1978 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAGTC 1919 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAA--GAGCAGCAG 173848 ||||| || | ||||| | || || ||||| || || ||||| ||| | ||||| | Sbjct 1918 GGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGCCG 1859 Query 173849 AAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAG 173908 ||||||| || || |||||||||||||| || ||||| || | ||||||||||| | | Sbjct 1858 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTG 1799 Query 173909 CATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTAC 173968 | |||||| || |||||| || ||||| ||| | |||| || || || || ||| Sbjct 1798 CTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 1739 Query 173969 CAAGAGGTAACGCACTTTAA 173988 | | || ||||| |||||| Sbjct 1738 CCCGTGGAAACGCTCTTTAA 1719 >seq12877 Length=40778 Score = 129 bits (142), Expect = 7e-25 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 173805 CCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGA 173864 |||||| || || ||||| || || ||||| ||| | ||||| |||||||| || || || Sbjct 745 CCTTAGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGA 804 Query 173865 GACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGT 173924 |||||||||||| || ||||| || | ||||||||||| | || |||||| | || Sbjct 805 GACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCA 864 Query 173925 AGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCACT 173984 |||||| || ||||| ||| | |||| || || || || |||| | || ||||| || Sbjct 865 AGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 924 Query 173985 TTAA 173988 |||| Sbjct 925 TTAA 928 >seq14024 Length=49420 Score = 116 bits (128), Expect = 4e-21 Identities = 242/357 (68%), Gaps = 15/357 (4%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||||||| |||||| || | || | ||| ||| Sbjct 34637 TTTGATATTATGGATGACTGGTTACGTAGAGATCATTTCGTTTTTGTAGGTTAGTCGGGT 34696 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTT--CTT---AGGAACTA 173065 || || || | ||||||||||| || || | || |||||||| || ||| || | Sbjct 34697 CTATTGCTCTTTCCTTGTGCTTATTTTGCTGTAGGGGGTTGGTTTAATTTACAGGTACGA 34756 Query 173066 CCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACT 173125 | || || || ||||||||||| ||||| || || ||||||| | ||||| || | Sbjct 34757 CGTTTGTAACTTCATGGTATACTCATGGGATGGCCAGTTCATATTTGGAAGGCTGCAATT 34816 Query 173126 TTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTT 173180 | ||||| ||| | || || |||| ||| | | || | |||| |||| Sbjct 34817 TCTTAACCGCAATCGATTCTACTCCTG-----CTAATAGTTTAGCACACTCTTTGTTGTT 34871 Query 173181 CCTTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATG 173240 | ||||| |||||||||||||| || |||||| ||| | || || | || Sbjct 34872 GTTGTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTTGGCGTCAATTAGGCGGCCAGTG 34931 Query 173241 GAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTT 173297 || ||||| || | ||||| | || ||||| |||||| | ||| | || || || Sbjct 34932 GACTTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAGGTCTTATGTTACGCCAATT 34988 >seq15982 Length=164312 Score = 84.2 bits (92), Expect = 3e-11 Identities = 186/273 (68%), Gaps = 17/273 (6%) Strand=Plus/Plus Query 173728 TTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACA--TCATCCATAGGTA 173785 ||||| ||| | |||||||| ||||| | | ||| | |||| | || || || Sbjct 21392 TTACATTTCTTTATGTTGTTTGTACCAATAACCGGTTTATGGATGAGTGCTCTTGAGTTA 21451 Query 173786 TCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAG 173845 || ||| | || | ||||| | || || ||||| || || ||||| | | | |||| Sbjct 21452 --GTCGGTTTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGATA-ACGTGCAG 21508 Query 173846 CAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGG----- 173900 | |||||||| | || |||||||||||||| | ||||| | ||| |||||||| Sbjct 21509 CTGAAGATCCTAAATTTGAGACTTTCTACACCAGAAATATTC-TCTCAATGAAGGTATTC 21567 Query 173901 ----TATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAG 173956 ||| | || |||||| | || |||||| || ||||| ||| | |||| || | Sbjct 21568 AGGTTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 21627 Query 173957 AAGAAGTGT-TACCAAGAGGTAACGCACTTTAA 173988 ||||| | |||| | || ||||| |||||| Sbjct 21628 -AGAAGGCTCTACCCTGTGGAAACGCTCTTTAA 21659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587719774343680