Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_015285.1
Length=174285
Score E
Sequences producing significant alignments: (Bits) Value
seq11475 473 1e-128
seq15224 279 6e-70
seq15824 138 1e-27
seq12771 122 1e-22
seq14024 109 6e-19
seq8938 107 2e-18
seq13902 100 3e-16
>seq11475
Length=22225
Score = 473 bits (524), Expect = 1e-128
Identities = 727/1024 (71%), Gaps = 12/1024 (1%)
Strand=Plus/Minus
Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGC-GCGATCGTTTCGTATTTATTGGTTGGTCTGG 163679
|||||| | ||||||||||| ||| | | || |||||||| ||| | |||||||||||
Sbjct 12883 TTTGATATTATGGATGACTGG-TTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 12825
Query 163680 ATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTT 163739
|| | || |||| ||||||| | || | || || ||| |||| ||||| || ||
Sbjct 12824 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTT 12765
Query 163740 CGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAATTTTC 163798
|| || || ||||| || ||||| |||| | ||| ||| | || || ||| |||||
Sbjct 12764 TGTAACTTCATGGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGC-AATTTCT 12706
Query 163799 TCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGG 163857
| || || || || || || |||||| | | | | || ||| || || || || |||
Sbjct 12705 TAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCT-TTGTTGTTGCTGTGG 12647
Query 163858 GGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTT 163917
|||||||| || || |||||||| || ||| ||| | || || || |||| ||||
Sbjct 12646 GGTCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTT 12587
Query 163918 GTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCT 163977
|| || || || || || || | || || ||||| ||| | || ||||| |||||||||
Sbjct 12586 GTTGCTCTTCATGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCT 12527
Query 163978 CGC-CTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTT 164036
|| ||| || | | | || || ||||| || || ||||| || || |||||||| ||
Sbjct 12526 CGATCTG-TTCAATTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTT 12468
Query 164037 CGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTT 164096
||| ||| || || || || || || |||||||| |||||||||| || || |||
Sbjct 12467 TGTTTCTGTATTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTT 12408
Query 164097 TGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTT 164156
||| || ||||| || || ||||| || | || ||||||| |||||||| ||||| |
Sbjct 12407 TGGTGTAGCAGCTATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCT 12348
Query 164157 GAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTAT 164216
|||||| || ||||||||||||||||||||| || | |||| || |||||| |||||
Sbjct 12347 GAACCCTTTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTAT 12288
Query 164217 TCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAA 164276
||| || | || || |||||||| || | || ||||| || ||||| || ||
Sbjct 12287 TCATGGTGCTACCGTAGAAAATACTTTATTCGAGGATGGTGATGGGGCAAATACATTCCG 12228
Query 164277 GGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 164336
||| ||| | | || || | ||||| |||||||| |||||||| || ||||| || ||
Sbjct 12227 GGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTG 12168
Query 164337 GTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 164396
||| || || || || ||||| ||||| || || || ||| | ||||| || ||||| ||
Sbjct 12167 GTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 12108
Query 164397 TGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCT 164456
||| || || | ||| |||||| || |||| | | || || || | || ||
Sbjct 12107 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCT 12048
Query 164457 TCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGAC 164516
||||| || || || || ||||| || | ||||| ||||||||||| || |||||
Sbjct 12047 ACGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAGAC 11988
Query 164517 TTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGA 164576
|||||| ||||| || || | || || ||||| | ||||| ||| | || | ||
Sbjct 11987 TTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 11928
Query 164577 CCAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTT 164634
|||| || || ||| || | ||||| || || || || || | || || || |||
Sbjct 11927 TCAGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTT 11870
Query 164635 TAAT 164638
||||
Sbjct 11869 TAAT 11866
>seq15224
Length=172684
Score = 279 bits (308), Expect = 6e-70
Identities = 304/404 (75%), Gaps = 0/404 (0%)
Strand=Plus/Plus
Query 162772 GCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 162831
||||| || || || |||||||| || | || || ||| || ||||||| | ||||||
Sbjct 89319 GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCAA 89378
Query 162832 GGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTC 162891
|| || ||||| | ||||| || || || |||||| ||||||| |||| ||||
Sbjct 89379 GGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGTA 89438
Query 162892 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTC 162951
||||| || ||||||||||| || ||||| || || |||||||||||||| || |||||
Sbjct 89439 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTA 89498
Query 162952 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGT 163011
||||| || || || || ||||| ||||| ||||| ||||| || ||| | | |
Sbjct 89499 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGG 89558
Query 163012 GAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACA 163071
|| || || |||| ||| || || | ||||||| || |||||||| ||||| ||
Sbjct 89559 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACT 89618
Query 163072 TACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 163131
|| || ||||| || || |||| ||| || ||||| ||||||||||||||||| |||
Sbjct 89619 TATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTTC 89678
Query 163132 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGT 163175
||||| |||||||| || ||||||||| | ||||| ||||| ||
Sbjct 89679 AACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722
Score = 125 bits (138), Expect = 8e-24
Identities = 124/161 (77%), Gaps = 6/161 (4%)
Strand=Plus/Plus
Query 163042 GGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTC 163101
||||||| || |||||||| ||||| || || || ||||| || || |||||||| ||
Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793
Query 163102 GGTCGTTTGATCTTC------CAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTC 163155
||||| ||||||||| |||||||| |||||||| || ||||| || ||||||
Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853
Query 163156 TTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGC 163196
||| | ||||| ||||| || ||||| || ||||| || ||
Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGC 89894
Score = 95.1 bits (104), Expect = 1e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 162514 ATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 162573
|| || || || |||||||| || | || || || | || || ||||| || || |||
Sbjct 89156 ATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAACAATATTATTTCT 89215
Query 162574 GGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCC 162633
||||| || |||| |||| || || || | || || ||||| || ||||||||
Sbjct 89216 GGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCAATATGGGAAGCA 89275
Query 162634 GCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 162670
||||| ||||||||||| | ||||| ||||||||||
Sbjct 89276 GCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312
>seq15824
Length=139560
Score = 138 bits (152), Expect = 1e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 163960 CGGCAATTTGAACTTGCTCGCCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCT 164019
|| ||||| ||||||||||| ||| | | | || || ||||| || || |||||
Sbjct 61334 CGCCAATTCGAACTTGCTCGATCTATTTAATTGCGCCCTTATAATGCAATAGCATTCTCG 61275
Query 164020 GGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGG 164079
|| || |||||||| || ||| ||| || || || || || || | |||||| |||||
Sbjct 61274 GGCCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGATCAATCTGGTTGG 61215
Query 164080 TTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGA 164139
||||| || || |||||| || ||||| || || ||||| || |||| |||||||
Sbjct 61214 TTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATTTTTCGATTCATCCTATTTTTTCAAGGG 61155
Query 164140 TTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGA 164178
|||||||| ||||| |||| | || ||||||||||||
Sbjct 61154 TTTCATAATTGGACGCAGAACTCTTTTCATATGATGGGA 61116
>seq12771
Length=31889
Score = 122 bits (134), Expect = 1e-22
Identities = 174/242 (72%), Gaps = 6/242 (2%)
Strand=Plus/Minus
Query 163942 CTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAGACCCTA 164000
|| || ||||| ||| | || ||||| ||||||||||| ||| || | | | || ||
Sbjct 8609 CTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTG-TTCAATTGCGCCCTTA 8551
Query 164001 CAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCC 164060
||||| || || ||||| || | |||| ||| || ||| ||| || || || || ||
Sbjct 8550 TAATGCAATAGCATTCTCGGGCCAAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCC 8491
Query 164061 TCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTG----GCAGCAATCTTCA 164116
|| | |||||| |||||||||| || || |||||| || ||| | || ||
Sbjct 8490 ACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTATGTAGCAACTATTTTTC 8431
Query 164117 GATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGG 164176
||| | || | || ||| ||| |||||||| ||||| |||||||| || ||||||||||
Sbjct 8430 GATCCATCCTCTTTTTTCGAGGGTTTCATAATTGGACGTTGAACCCTTTTCATATGATGG 8371
Query 164177 GA 164178
||
Sbjct 8370 GA 8369
>seq14024
Length=49420
Score = 109 bits (120), Expect = 6e-19
Identities = 249/367 (68%), Gaps = 11/367 (3%)
Strand=Plus/Plus
Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGC-GCGATCGTTTCGTATTTATTGGTTGGTCTGG 163679
|||||| | ||||||||||| ||| | | |||| |||||| ||| | |||| ||| ||
Sbjct 34637 TTTGATATTATGGATGACTGG-TTACGTAGAGATCATTTCGTTTTTGTAGGTTAGTCGGG 34695
Query 163680 ATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACT-----GGTACA 163734
|| | || |||| ||||||| | || | || || ||| ||| | |||||
Sbjct 34696 TCTATTGCTCTTTCCTTGTGCTTATTTTGCTGTAGGGGGTTGGTTTAATTTACAGGTACG 34755
Query 163735 ACTTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAA 163793
|| || || || || ||||| || ||||| |||| | ||| ||| | || || ||| ||
Sbjct 34756 ACGTTTGTAACTTCATGGTATACTCATGGGATGGCCAGTTCATATTTGGAAGGCTGC-AA 34814
Query 163794 TTTTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCT 163853
||| | || || | || || |||||| | | | | || ||| || || || |
Sbjct 34815 TTTCTTAACCGCAATCGATTCTACTCCTGCTAATAGTTTAGCACACTCT-TTGTTGTTGT 34873
Query 163854 C-TGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGA 163912
||||||||||| || || |||||||| || ||| ||| | || || | ||||
Sbjct 34874 TGTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTTGGCGTCAATTAGGCGGCCAGTGGA 34933
Query 163913 ATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAAC 163972
|||||| || || || || || || | || || ||| | ||| | || ||||| |||
Sbjct 34934 CTTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAGGTCTTATGTTACGCCAATTCAAAC 34993
Query 163973 TTGCTCG 163979
|||||||
Sbjct 34994 TTGCTCG 35000
>seq8938
Length=12132
Score = 107 bits (118), Expect = 2e-18
Identities = 222/326 (68%), Gaps = 6/326 (2%)
Strand=Plus/Minus
Query 164318 TCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGC 164377
|||| || ||||| || ||||| || | || || ||||| ||||| || || | |||
Sbjct 2040 TCACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGT 1981
Query 164378 TTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTA 164437
| ||||| || ||||| ||||| || || | | | |||||| || |||| |
Sbjct 1980 TACATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAG 1921
Query 164438 TTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGAT-TA-GAGCAGC 164495
| || || || | || || ||||| || || || || ||||| || || | |||||
Sbjct 1920 TCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGC 1861
Query 164496 AGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCG 164555
||||||||||| || ||||||||||| ||||| || || | || || ||||| | ||
Sbjct 1860 CGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCG 1801
Query 164556 TGCATGGTTAGCACCAGTTGACCAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTA 164613
||| ||| | | | || |||| || || ||| || | ||||| || || ||
Sbjct 1800 TGCTTGGATGGTGGCTCAAGATCAGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTT 1743
Query 164614 CTGCCGAGAGGTAATGCGCTTTAATA 164639
|| || | || || || ||||||||
Sbjct 1742 CTACCCCGTGGAAACGCTCTTTAATA 1717
>seq13902
Length=44788
Score = 100 bits (110), Expect = 3e-16
Identities = 234/345 (68%), Gaps = 16/345 (5%)
Strand=Plus/Minus
Query 163698 TGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGTGGTACAC 163757
||||||| | || | || || ||| |||| |||| || || || || || ||||| ||
Sbjct 6424 TGCTTAT-TCGCTGTAGGGGGTTGGTTTACAAGTACGACGTTTGTAACCTCATGGTATAC 6366
Query 163758 CCATGGACTGGCAACTT--------CCTATCTTGA--GGGTGCTAATTTTCTCACAGCGG 163807
||||| |||| |||| | ||| |||| || || |||||| | || || |
Sbjct 6365 TCATGGGTTGGCCACTTGGCCAGTTCATAT-TTGAAAGGCTG-TAATTTCTTAACCGCAG 6308
Query 163808 CTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAG 163866
|||| || || |||||| | | | | || ||| || || || || ||| |||||||
Sbjct 6307 CTGTTTCCACTCCTGCTAATAGTTTAGCACACTCTTTTGTTGTTTCTGTGGAGTCCTGAA 6248
Query 163867 GCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTC 163926
|| || |||||||| || ||| ||| | || || | |||| |||||| | ||
Sbjct 6247 GCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCCGTGGACTTTTGTTGATCTT 6188
Query 163927 CACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG-CCTGAT 163985
|| || || || || || ||||| ||| | || ||||| ||||||||||| ||| |
Sbjct 6187 CATGGTGCTTTCAGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTG-T 6129
Query 163986 TGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGC 164030
| | | | || || ||||| || || ||||| || || |||||
Sbjct 6128 TCAATTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGC 6084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557269745657600
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