Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq11475 473 1e-128 seq15224 279 6e-70 seq15824 138 1e-27 seq12771 122 1e-22 seq14024 109 6e-19 seq8938 107 2e-18 seq13902 100 3e-16 >seq11475 Length=22225 Score = 473 bits (524), Expect = 1e-128 Identities = 727/1024 (71%), Gaps = 12/1024 (1%) Strand=Plus/Minus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGC-GCGATCGTTTCGTATTTATTGGTTGGTCTGG 163679 |||||| | ||||||||||| ||| | | || |||||||| ||| | ||||||||||| Sbjct 12883 TTTGATATTATGGATGACTGG-TTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGG 12825 Query 163680 ATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTT 163739 || | || |||| ||||||| | || | || || ||| |||| ||||| || || Sbjct 12824 TCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTT 12765 Query 163740 CGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAATTTTC 163798 || || || ||||| || ||||| |||| | ||| ||| | || || ||| ||||| Sbjct 12764 TGTAACTTCATGGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGC-AATTTCT 12706 Query 163799 TCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGG 163857 | || || || || || || |||||| | | | | || ||| || || || || ||| Sbjct 12705 TAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCT-TTGTTGTTGCTGTGG 12647 Query 163858 GGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTT 163917 |||||||| || || |||||||| || ||| ||| | || || || |||| |||| Sbjct 12646 GGTCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTT 12587 Query 163918 GTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCT 163977 || || || || || || || | || || ||||| ||| | || ||||| ||||||||| Sbjct 12586 GTTGCTCTTCATGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCT 12527 Query 163978 CGC-CTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTT 164036 || ||| || | | | || || ||||| || || ||||| || || |||||||| || Sbjct 12526 CGATCTG-TTCAATTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTT 12468 Query 164037 CGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTT 164096 ||| ||| || || || || || || |||||||| |||||||||| || || ||| Sbjct 12467 TGTTTCTGTATTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTT 12408 Query 164097 TGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTT 164156 ||| || ||||| || || ||||| || | || ||||||| |||||||| ||||| | Sbjct 12407 TGGTGTAGCAGCTATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCT 12348 Query 164157 GAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTAT 164216 |||||| || ||||||||||||||||||||| || | |||| || |||||| ||||| Sbjct 12347 GAACCCTTTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTAT 12288 Query 164217 TCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAA 164276 ||| || | || || |||||||| || | || ||||| || ||||| || || Sbjct 12287 TCATGGTGCTACCGTAGAAAATACTTTATTCGAGGATGGTGATGGGGCAAATACATTCCG 12228 Query 164277 GGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 164336 ||| ||| | | || || | ||||| |||||||| |||||||| || ||||| || || Sbjct 12227 GGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTG 12168 Query 164337 GTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 164396 ||| || || || || ||||| ||||| || || || ||| | ||||| || ||||| || Sbjct 12167 GTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 12108 Query 164397 TGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCT 164456 ||| || || | ||| |||||| || |||| | | || || || | || || Sbjct 12107 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCT 12048 Query 164457 TCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGAC 164516 ||||| || || || || ||||| || | ||||| ||||||||||| || ||||| Sbjct 12047 ACGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAGAC 11988 Query 164517 TTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGA 164576 |||||| ||||| || || | || || ||||| | ||||| ||| | || | || Sbjct 11987 TTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGA 11928 Query 164577 CCAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTT 164634 |||| || || ||| || | ||||| || || || || || | || || || ||| Sbjct 11927 TCAGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTT 11870 Query 164635 TAAT 164638 |||| Sbjct 11869 TAAT 11866 >seq15224 Length=172684 Score = 279 bits (308), Expect = 6e-70 Identities = 304/404 (75%), Gaps = 0/404 (0%) Strand=Plus/Plus Query 162772 GCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 162831 ||||| || || || |||||||| || | || || ||| || ||||||| | |||||| Sbjct 89319 GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCAA 89378 Query 162832 GGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTC 162891 || || ||||| | ||||| || || || |||||| ||||||| |||| |||| Sbjct 89379 GGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGTA 89438 Query 162892 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTC 162951 ||||| || ||||||||||| || ||||| || || |||||||||||||| || ||||| Sbjct 89439 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTA 89498 Query 162952 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGT 163011 ||||| || || || || ||||| ||||| ||||| ||||| || ||| | | | Sbjct 89499 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGG 89558 Query 163012 GAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACA 163071 || || || |||| ||| || || | ||||||| || |||||||| ||||| || Sbjct 89559 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACT 89618 Query 163072 TACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 163131 || || ||||| || || |||| ||| || ||||| ||||||||||||||||| ||| Sbjct 89619 TATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTTC 89678 Query 163132 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGT 163175 ||||| |||||||| || ||||||||| | ||||| ||||| || Sbjct 89679 AACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722 Score = 125 bits (138), Expect = 8e-24 Identities = 124/161 (77%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 163042 GGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTC 163101 ||||||| || |||||||| ||||| || || || ||||| || || |||||||| || Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 163102 GGTCGTTTGATCTTC------CAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTC 163155 ||||| ||||||||| |||||||| |||||||| || ||||| || |||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 163156 TTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGC 163196 ||| | ||||| ||||| || ||||| || ||||| || || Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGC 89894 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 162514 ATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 162573 || || || || |||||||| || | || || || | || || ||||| || || ||| Sbjct 89156 ATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAACAATATTATTTCT 89215 Query 162574 GGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCC 162633 ||||| || |||| |||| || || || | || || ||||| || |||||||| Sbjct 89216 GGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCAATATGGGAAGCA 89275 Query 162634 GCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 162670 ||||| ||||||||||| | ||||| |||||||||| Sbjct 89276 GCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312 >seq15824 Length=139560 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 163960 CGGCAATTTGAACTTGCTCGCCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCT 164019 || ||||| ||||||||||| ||| | | | || || ||||| || || ||||| Sbjct 61334 CGCCAATTCGAACTTGCTCGATCTATTTAATTGCGCCCTTATAATGCAATAGCATTCTCG 61275 Query 164020 GGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGG 164079 || || |||||||| || ||| ||| || || || || || || | |||||| ||||| Sbjct 61274 GGCCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGATCAATCTGGTTGG 61215 Query 164080 TTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGA 164139 ||||| || || |||||| || ||||| || || ||||| || |||| ||||||| Sbjct 61214 TTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATTTTTCGATTCATCCTATTTTTTCAAGGG 61155 Query 164140 TTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGA 164178 |||||||| ||||| |||| | || |||||||||||| Sbjct 61154 TTTCATAATTGGACGCAGAACTCTTTTCATATGATGGGA 61116 >seq12771 Length=31889 Score = 122 bits (134), Expect = 1e-22 Identities = 174/242 (72%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 163942 CTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAGACCCTA 164000 || || ||||| ||| | || ||||| ||||||||||| ||| || | | | || || Sbjct 8609 CTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTG-TTCAATTGCGCCCTTA 8551 Query 164001 CAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCC 164060 ||||| || || ||||| || | |||| ||| || ||| ||| || || || || || Sbjct 8550 TAATGCAATAGCATTCTCGGGCCAAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCC 8491 Query 164061 TCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTG----GCAGCAATCTTCA 164116 || | |||||| |||||||||| || || |||||| || ||| | || || Sbjct 8490 ACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTATGTAGCAACTATTTTTC 8431 Query 164117 GATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGG 164176 ||| | || | || ||| ||| |||||||| ||||| |||||||| || |||||||||| Sbjct 8430 GATCCATCCTCTTTTTTCGAGGGTTTCATAATTGGACGTTGAACCCTTTTCATATGATGG 8371 Query 164177 GA 164178 || Sbjct 8370 GA 8369 >seq14024 Length=49420 Score = 109 bits (120), Expect = 6e-19 Identities = 249/367 (68%), Gaps = 11/367 (3%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGC-GCGATCGTTTCGTATTTATTGGTTGGTCTGG 163679 |||||| | ||||||||||| ||| | | |||| |||||| ||| | |||| ||| || Sbjct 34637 TTTGATATTATGGATGACTGG-TTACGTAGAGATCATTTCGTTTTTGTAGGTTAGTCGGG 34695 Query 163680 ATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACT-----GGTACA 163734 || | || |||| ||||||| | || | || || ||| ||| | ||||| Sbjct 34696 TCTATTGCTCTTTCCTTGTGCTTATTTTGCTGTAGGGGGTTGGTTTAATTTACAGGTACG 34755 Query 163735 ACTTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAA 163793 || || || || || ||||| || ||||| |||| | ||| ||| | || || ||| || Sbjct 34756 ACGTTTGTAACTTCATGGTATACTCATGGGATGGCCAGTTCATATTTGGAAGGCTGC-AA 34814 Query 163794 TTTTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCT 163853 ||| | || || | || || |||||| | | | | || ||| || || || | Sbjct 34815 TTTCTTAACCGCAATCGATTCTACTCCTGCTAATAGTTTAGCACACTCT-TTGTTGTTGT 34873 Query 163854 C-TGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGA 163912 ||||||||||| || || |||||||| || ||| ||| | || || | |||| Sbjct 34874 TGTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTTGGCGTCAATTAGGCGGCCAGTGGA 34933 Query 163913 ATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAAC 163972 |||||| || || || || || || | || || ||| | ||| | || ||||| ||| Sbjct 34934 CTTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAGGTCTTATGTTACGCCAATTCAAAC 34993 Query 163973 TTGCTCG 163979 ||||||| Sbjct 34994 TTGCTCG 35000 >seq8938 Length=12132 Score = 107 bits (118), Expect = 2e-18 Identities = 222/326 (68%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 164318 TCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGC 164377 |||| || ||||| || ||||| || | || || ||||| ||||| || || | ||| Sbjct 2040 TCACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGT 1981 Query 164378 TTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTA 164437 | ||||| || ||||| ||||| || || | | | |||||| || |||| | Sbjct 1980 TACATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAG 1921 Query 164438 TTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGAT-TA-GAGCAGC 164495 | || || || | || || ||||| || || || || ||||| || || | ||||| Sbjct 1920 TCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGC 1861 Query 164496 AGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCG 164555 ||||||||||| || ||||||||||| ||||| || || | || || ||||| | || Sbjct 1860 CGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCG 1801 Query 164556 TGCATGGTTAGCACCAGTTGACCAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTA 164613 ||| ||| | | | || |||| || || ||| || | ||||| || || || Sbjct 1800 TGCTTGGATGGTGGCTCAAGATCAGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTT 1743 Query 164614 CTGCCGAGAGGTAATGCGCTTTAATA 164639 || || | || || || |||||||| Sbjct 1742 CTACCCCGTGGAAACGCTCTTTAATA 1717 >seq13902 Length=44788 Score = 100 bits (110), Expect = 3e-16 Identities = 234/345 (68%), Gaps = 16/345 (5%) Strand=Plus/Minus Query 163698 TGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGTGGTACAC 163757 ||||||| | || | || || ||| |||| |||| || || || || || ||||| || Sbjct 6424 TGCTTAT-TCGCTGTAGGGGGTTGGTTTACAAGTACGACGTTTGTAACCTCATGGTATAC 6366 Query 163758 CCATGGACTGGCAACTT--------CCTATCTTGA--GGGTGCTAATTTTCTCACAGCGG 163807 ||||| |||| |||| | ||| |||| || || |||||| | || || | Sbjct 6365 TCATGGGTTGGCCACTTGGCCAGTTCATAT-TTGAAAGGCTG-TAATTTCTTAACCGCAG 6308 Query 163808 CTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAG 163866 |||| || || |||||| | | | | || ||| || || || || ||| ||||||| Sbjct 6307 CTGTTTCCACTCCTGCTAATAGTTTAGCACACTCTTTTGTTGTTTCTGTGGAGTCCTGAA 6248 Query 163867 GCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTC 163926 || || |||||||| || ||| ||| | || || | |||| |||||| | || Sbjct 6247 GCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCCGTGGACTTTTGTTGATCTT 6188 Query 163927 CACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG-CCTGAT 163985 || || || || || || ||||| ||| | || ||||| ||||||||||| ||| | Sbjct 6187 CATGGTGCTTTCAGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTG-T 6129 Query 163986 TGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGC 164030 | | | | || || ||||| || || ||||| || || ||||| Sbjct 6128 TCAATTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGC 6084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557269745657600