Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq15224 241 2e-58
>seq15224
Length=172684
Score = 241 bits (266), Expect = 2e-58
Identities = 273/366 (75%), Gaps = 0/366 (0%)
Strand=Plus/Plus
Query 215710 TGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGG 215769
||| || ||| | | |||||| | ||||| || || ||||||| |||||| | ||
Sbjct 89348 TGCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGG 89407
Query 215770 AATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCA 215829
||| ||||| || ||||||| |||| |||| |||||||||||||||||||| || |||||
Sbjct 89408 AATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 89467
Query 215830 CCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCA 215889
|||||| |||||||| ||||| |||||||| ||||| || || | || ||| |||||
Sbjct 89468 CCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCA 89527
Query 215890 CGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTA 215949
||||| | || || ||| | | || || || || || || | |||||| || |
Sbjct 89528 TGGTTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGA 89587
Query 215950 CGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTT 216009
||||||| || || |||||||| ||||| || || ||||||||||| || | ||| ||
Sbjct 89588 AGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGTTTATTT 89647
Query 216010 TGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 216069
|||||| | ||||||||||| || ||||||||| || | | | ||||||||| |
Sbjct 89648 TGGTCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCCGTTCTTTACACTTCTTCTT 89707
Query 216070 TGCAGC 216075
|| ||
Sbjct 89708 AGCTGC 89713
Score = 89.7 bits (98), Expect = 8e-13
Identities = 125/174 (72%), Gaps = 1/174 (1%)
Strand=Plus/Plus
Query 215406 CTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATG 215465
|||| || || ||| |||| || || || | || || ||| | || ||| || | || |
Sbjct 89140 CTGC-CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACG 89198
Query 215466 GTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCT 215525
| ||||| || || |||||||| || | |||| ||| || || || || || || |
Sbjct 89199 GAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTT 89258
Query 215526 ACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTT 215579
| || || |||||||||||| | ||||| || ||| | || |||||||| ||||
Sbjct 89259 ATCCAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312
Score = 84.2 bits (92), Expect = 3e-11
Identities = 128/183 (70%), Gaps = 6/183 (3%)
Strand=Plus/Plus
Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010
||||||| || || |||||||| ||||| || || ||||||||||| || ||||| |||
Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793
Query 216011 GGTCGCCTCATCTTC------CAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTC 216064
||||| | |||||| ||||| || ||||||||| || | | | ||||||
Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853
Query 216065 TTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATG 216124
||| | || || | || || | |||| ||| ||||| | ||| | ||||||
Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913
Query 216125 GCG 216127
|||
Sbjct 89914 GCG 89916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 744661672010240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |