Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq15224 241 2e-58 >seq15224 Length=172684 Score = 241 bits (266), Expect = 2e-58 Identities = 273/366 (75%), Gaps = 0/366 (0%) Strand=Plus/Plus Query 215710 TGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGG 215769 ||| || ||| | | |||||| | ||||| || || ||||||| |||||| | || Sbjct 89348 TGCCGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGG 89407 Query 215770 AATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCA 215829 ||| ||||| || ||||||| |||| |||| |||||||||||||||||||| || ||||| Sbjct 89408 AATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 89467 Query 215830 CCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCA 215889 |||||| |||||||| ||||| |||||||| ||||| || || | || ||| ||||| Sbjct 89468 CCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCA 89527 Query 215890 CGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTA 215949 ||||| | || || ||| | | || || || || || || | |||||| || | Sbjct 89528 TGGTTCCTTGGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGA 89587 Query 215950 CGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTT 216009 ||||||| || || |||||||| ||||| || || ||||||||||| || | ||| || Sbjct 89588 AGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGTTTATTT 89647 Query 216010 TGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 216069 |||||| | ||||||||||| || ||||||||| || | | | ||||||||| | Sbjct 89648 TGGTCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCCGTTCTTTACACTTCTTCTT 89707 Query 216070 TGCAGC 216075 || || Sbjct 89708 AGCTGC 89713 Score = 89.7 bits (98), Expect = 8e-13 Identities = 125/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 215406 CTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATG 215465 |||| || || ||| |||| || || || | || || ||| | || ||| || | || | Sbjct 89140 CTGC-CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACG 89198 Query 215466 GTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCT 215525 | ||||| || || |||||||| || | |||| ||| || || || || || || | Sbjct 89199 GAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTT 89258 Query 215526 ACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTT 215579 | || || |||||||||||| | ||||| || ||| | || |||||||| |||| Sbjct 89259 ATCCAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/183 (70%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 ||||||| || || |||||||| ||||| || || ||||||||||| || ||||| ||| Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 216011 GGTCGCCTCATCTTC------CAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTC 216064 ||||| | |||||| ||||| || ||||||||| || | | | |||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 216065 TTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATG 216124 ||| | || || | || || | |||| ||| ||||| | ||| | |||||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 216125 GCG 216127 ||| Sbjct 89914 GCG 89916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744661672010240