Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq15224 226 3e-54 >seq15224 Length=172684 Score = 226 bits (250), Expect = 3e-54 Identities = 286/393 (73%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 170077 GCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAG 170136 |||||||| ||||| || |||| || || || ||||| | ||||| | ||||| Sbjct 89319 GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCAA 89378 Query 170137 GGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTA 170196 ||| || || || || |||||| |||| || || ||||| || ||||||||| | ||| Sbjct 89379 GGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGTA 89438 Query 170197 TTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATG 170256 ||||| || ||||||||||| |||||||||||||| || ||| || || |||||| | Sbjct 89439 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTA 89498 Query 170257 TTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGA 170316 ||||| || | || || || ||||| ||||| | ||||| ||| | | || || Sbjct 89499 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAGG 89558 Query 170317 GAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACA 170376 || || ||||| || || || || | || |||| ||| || ||||| |||||||| Sbjct 89559 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACT 89618 Query 170377 TACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTT 170436 || || || || || || |||| || |||||| || | ||||||||||||||||| || Sbjct 89619 TATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTTC 89678 Query 170437 AACAATAGTCGTAGTCTTCACTTCTTCCTTGCT 170469 |||||| ||| | | ||||||||| | ||| Sbjct 89679 AACAATTCCCGTTCTTTACACTTCTTCTTAGCT 89711 Score = 109 bits (120), Expect = 6e-19 Identities = 133/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406 || |||| ||| || ||||| |||||||| || || || || || || ||||| || ||| Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 170407 GGTAGACTTATCTTC------CAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTC 170460 ||| || | |||||| ||||||||||| || |||||| |||| | | |||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 170461 TTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATG 170520 ||| | ||| | | || ||||| | || ||||| ||| | | |||||| |||| ||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 170521 GC 170522 || Sbjct 89914 GC 89915 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | || || ||||| || || ||| Sbjct 89156 ATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAACAATATTATTTCT 89215 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || || | || || ||||| || ||||||||| Sbjct 89216 GGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCAATATGGGAAGCA 89275 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTAT 169977 ||| || | ||||||||||| ||||| |||||||||||| Sbjct 89276 GCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTAT 89314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582519506867200