Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq15224 298 6e-76 >seq15224 Length=172684 Score = 298 bits (330), Expect = 6e-76 Identities = 309/405 (76%), Gaps = 0/405 (0%) Strand=Plus/Minus Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| ||||| ||||| | |||||| ||||||||| |||||| ||| Sbjct 89722 ACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGG 89663 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | ||||| || || | |||||||| || |||||||||||||| || |||||| Sbjct 89662 AAGATCAATCGACCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 89603 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || ||||||| | || || |||||||||| ||||| | || | | |||| Sbjct 89602 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 89543 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || ||| Sbjct 89542 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCC 89483 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||||||||| || || |||||||| |||| |||| ||||| Sbjct 89482 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 89423 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || || || || | ||||| |||||||| || ||||| || | ||||| Sbjct 89422 AAAGTACCAGAAATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAG 89363 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCA 84569 | | ||| || |||| ||||||||||| ||||| || || ||| Sbjct 89362 ATCAAGAAAACGGCAGTAGCCGCTGCAACCGGAGCTGAATATGCA 89318 Score = 154 bits (170), Expect = 2e-32 Identities = 143/182 (79%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 84123 GCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAG 84182 ||||| ||||||| ||| | ||||| ||||||||| || || || ||||||||||| ||| Sbjct 89915 GCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCGACTACCGGCCAAGCAGCTAAG 89856 Query 84183 AAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGC------ATACTGGAAGATAAGACGA 84236 || ||||| | ||||||| ||||||||| ||| ||| |||||||| | ||| Sbjct 89855 AAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGATATTGGAAGATCAATCGA 89796 Query 84237 CCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAA 84296 || || || || |||||||| || |||||||||||||| || |||||||| || ||||| Sbjct 89795 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAA 89736 Query 84297 CC 84298 || Sbjct 89735 CC 89734 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 84668 ATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAA 84727 |||||| ||||||||||||| ||| || || | | |||||||||||| || ||||| || Sbjct 89314 ATAAGGACCACCATTATATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAA 89255 Query 84728 ATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTA 84787 ||| | || ||||| ||| | |||| | |||||||||||| || ||||||||||| Sbjct 89254 ATGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTA 89195 Query 84788 CATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGG 84838 | ||||| || | || || ||||| || || ||||||| ||||| || Sbjct 89194 AAGTAGAGATCCCGAAACAGGTTCACGAATCCCATCAATATTGACTGGCGG 89144 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 84753 GGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCA 84812 |||| | |||||||||||| || ||||||||||| | ||||| || | || || ||| Sbjct 89134 GGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCCGAAACAGGTTCA 89075 Query 84813 CGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGT 84871 || || || ||||||| ||||| || ||| ||| ||| || || || || ||||| ||| Sbjct 89074 CGAATCCCATCAATATTGACTGGCGGAGCAGCAATGAAGGCTATAATAAATACAGA-AGT 89016 Query 84872 GGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCA 84910 |||| | || || |||||||| | | |||||||| Sbjct 89015 TGCAGTCAATAATGTAGGAATCATCAAAACACCAAACCA 88977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570951630199040