Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq16048 113 5e-20 seq15946 109 6e-19 seq11586 109 6e-19 seq16271 86.0 7e-12 seq16162 86.0 7e-12 >seq16048 Length=246288 Score = 113 bits (124), Expect = 5e-20 Identities = 371/565 (66%), Gaps = 20/565 (4%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||| || || || || |||||||| | | || | |||||| || || ||||| Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCC-AGAAAAGA 19078 || ||||| ||||| | ||||| | ||| || || | ||| | ||| |||||||| Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 204396 Query 19079 ATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTAT 19138 |||| || || || |||||||| | | || || || ||| | ||| | || Sbjct 204395 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCA-AAC--GTCTCAGAACCAT 204339 Query 19139 GAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198 |||||| || |||||||| |||||||| || || || || ||||| | || | Sbjct 204338 CAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCAC 204279 Query 19199 TAAATAGATACATACGCTCATCT--GTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 ||| | || | || ||| | | ||| | || ||| | || | ||| | ||| Sbjct 204278 GAAACAAATTCG-ACT-TCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTA 204221 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 ||| || ||||||||||| || || || |||||||| |||||||| | ||||| | Sbjct 204220 CATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGG 204161 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGA----CCAAATTTTCATTAACTATTCCATCAC 19372 | ||| | || || || | | ||| | | || || ||| || |||||| Sbjct 204160 GAGCTGAATCTC-CTTCATGAAC---CGACACGCGAGGTTCTCGAGAACAATCCCATCAG 204105 Query 19373 TAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTAT 19432 || ||||| || || | || || | || ||||| |||||| ||| || || Sbjct 204104 ATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTCAAGGTCG 204045 Query 19433 T---CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCT 19489 | ||| | | | |||| || | ||| ||||||||| | |||||||| || || | Sbjct 204044 TTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTT 203985 Query 19490 CTGCTTTTTTATACATGTTCCATAT 19514 | ||||| || ||||| | ||| || Sbjct 203984 CGGCTTTCTTGTACATTTCCCAGAT 203960 >seq15946 Length=172941 Score = 109 bits (120), Expect = 6e-19 Identities = 370/565 (65%), Gaps = 20/565 (4%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||| || || || || |||||||| | | || | |||||| || || ||||| Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCC-AGAAAAGA 19078 || ||||| ||||| | ||||| | ||| || || | ||| | ||| |||||||| Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 58461 Query 19079 ATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTAT 19138 |||| || || || |||||||| | | || || || ||| | ||| | || Sbjct 58460 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCA-AAC--GTCTCAGAACCAT 58404 Query 19139 GAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198 |||||| || |||||||| |||||||| || || || || ||||| | || | Sbjct 58403 CAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCAC 58344 Query 19199 TAAATAGATACATACGCTCATCT--GTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 ||| | || | || ||| | | ||| | || ||| | || | ||| | ||| Sbjct 58343 GAAACAAATTCG-ACT-TCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTA 58286 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 ||| || ||||||||||| || || || |||||||| |||||||| | ||||| | Sbjct 58285 CATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGG 58226 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGA----CCAAATTTTCATTAACTATTCCATCAC 19372 | ||| | || || || | | ||| | | || || ||| || |||||| Sbjct 58225 GAGCTGAATCTC-CTTCATGAAC---CGACACGCGAGGTTCTCGAGAACAATCCCATCAG 58170 Query 19373 TAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTAT 19432 || ||||| || || | || || | || ||||| ||||| ||| || || Sbjct 58169 ATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCG 58110 Query 19433 T---CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCT 19489 | ||| | | | |||| || | ||| ||||||||| | |||||||| || || | Sbjct 58109 TTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTT 58050 Query 19490 CTGCTTTTTTATACATGTTCCATAT 19514 | ||||| || ||||| | ||| || Sbjct 58049 CGGCTTTCTTGTACATTTCCCAGAT 58025 >seq11586 Length=26096 Score = 109 bits (120), Expect = 6e-19 Identities = 370/565 (65%), Gaps = 20/565 (4%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||| || || || || |||||||| | | || | |||||| || || ||||| Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCC-AGAAAAGA 19078 || ||||| ||||| | ||||| | ||| || || | ||| | ||| |||||||| Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 4219 Query 19079 ATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTAT 19138 |||| || || || |||||||| | | || || || ||| | ||| | || Sbjct 4218 ATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCA-AAC--GTCTCAGAACCAT 4162 Query 19139 GAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198 |||||| || |||||||| |||||||| || || || || ||||| | || | Sbjct 4161 CAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCAC 4102 Query 19199 TAAATAGATACATACGCTCATCT--GTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 ||| | || | || ||| | | ||| | || ||| | || | ||| | ||| Sbjct 4101 GAAACAAATTCG-ACT-TCAACGACGAATCCTGAATATACGTCTCAAGCAAAAGCGAGTA 4044 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 ||| || ||||||||||| || || || |||||||| |||||||| | ||||| | Sbjct 4043 CATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGG 3984 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGA----CCAAATTTTCATTAACTATTCCATCAC 19372 | ||| | || || || | | ||| | | || || ||| || |||||| Sbjct 3983 GAGCTGAATCTC-CTTCATGAAC---CGACACGCGAGGTTCTCGAGAACAATCCCATCAG 3928 Query 19373 TAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTAT 19432 || ||||| || || | || || | || ||||| ||||| ||| || || Sbjct 3927 ATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCG 3868 Query 19433 T---CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCT 19489 | ||| | | | |||| || | ||| ||||||||| | |||||||| || || | Sbjct 3867 TTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTT 3808 Query 19490 CTGCTTTTTTATACATGTTCCATAT 19514 | ||||| || ||||| | ||| || Sbjct 3807 CGGCTTTCTTGTACATTTCCCAGAT 3783 >seq16271 Length=354655 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668 ||||||| ||||||||||| ||| ||||||| ||| || | || | ||| |||| Sbjct 279328 TTAAATAGAGTTGGAGATGCGTGAGTAAACCACCTCTGAGACATAAAGTGATAAGTTTTG 279387 Query 48669 ATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTAACATATATTG 48727 || |||| || |||||| | ||| || ||||| | || || | ||| ||||| | ||| Sbjct 279388 ATGGCAGAGTCGATATCCTCCTTG-TGGATACCAACCGAAACTCTCATCAACATGTGTTG 279446 Query 48728 AGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAA 48787 ||||| || |||| || | | |||| ||||| ||| | || | |||||||| Sbjct 279447 TGGTCTCTCGACAACCTTCCCAGAAACCCTCAAGAGATACGATCTCTCTAGGGTTTTAAA 279506 Query 48788 ACCAAAATA 48796 |||||||| Sbjct 279507 GCCAAAATA 279515 >seq16162 Length=245457 Score = 86.0 bits (94), Expect = 7e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398 |||| |||| || ||| || ||||| || | |||| ||||| | || | || Sbjct 41313 ATTATACCTTTTCTTTTGCCTCCACCTTGGTCAACGTATCGAGCAGTGTCATTGAACACC 41254 Query 48399 CTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTA 48458 || | ||| ||| |||||||||||| | ||||| || ||| ||| ||||| || | Sbjct 41253 CTAAGCATCGGGGTAATACCATTTGAGGTTCCATTTGTACCCCGAATGTAACTACCGGTT 41194 Query 48459 GCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC 48518 || | ||||| ||| || | ||| |||||||| || ||| || | ||||||| Sbjct 41193 GCACGAATATTGTGAATCGACACACCAATACCACCAGCAGATTTGCTAATAACAGCACAC 41134 Query 48519 CGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAA 48578 || | |||||||| |||||||| || || || ||| |||| || || || ||| Sbjct 41133 TCCTTCAATGTATCATAGATTCCTTCAATGCTGTCCTCTTTCATGCATACAAGGAAGCAA 41074 Query 48579 CT 48580 || Sbjct 41073 CT 41072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561791995480320