Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq15224 203 1e-47
>seq15224
Length=172684
Score = 203 bits (224), Expect = 1e-47
Identities = 288/405 (71%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 26188 TGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACA 26247
||||||| |||| || | | || ||| || || ||||| | ||||| | || ||
Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377
Query 26248 AGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGT 26307
||| || ||| |||||| |||||| | || || ||||||||||| ||||| ||| | ||
Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437
Query 26308 ATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGT 26367
|||||| || || || || || || ||||||||||| || ||| ||||| ||||| ||
Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497
Query 26368 TTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGC 26427
||||| || | || || ||||||||| || ||||| ||||| | |||
Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557
Query 26428 AGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGAC 26487
||||| ||||| | | || ||| | || || | ||||| ||||| ||||| ||
Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617
Query 26488 ATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTT 26547
|||||||| || ||||| || | || ||||| |||| || || || ||||| |||||
Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677
Query 26548 TAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGT 26592
|| || ||||||| | || ||||| | ||| ||||||||||
Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722
Score = 84.2 bits (92), Expect = 6e-12
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 25919 CCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAAC 25978
||||| || |||| ||||| || ||||| || ||||| || || || | |||||||||
Sbjct 89144 CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAAC 89203
Query 25979 AATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCG 26038
||||| || || || || | | || | ||| || || || | |||||||| ||
Sbjct 89204 AATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCA 89263
Query 26039 ATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATAT 26089
|| |||||||| | | | || |||||| |||| ||||| || || |||
Sbjct 89264 ATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTAT 89314
Score = 82.4 bits (90), Expect = 2e-11
Identities = 143/206 (69%), Gaps = 13/206 (6%)
Strand=Plus/Plus
Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGG------- 25854
|| ||| | ||| | || || ||||| ||||| || || | |||||||| ||
Sbjct 88921 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATCGGATGGTTTGGAGATGGT 88980
Query 25855 --GGTGCTT--ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTC 25909
|||| || ||||| || ||| | | || ||| | ||| ||||| | ||||||
Sbjct 88981 TTGGTGTTTTGATGATTCCTACATTATTGACTGCAACTTC-TGTATTTATTATAGCCTTC 89039
Query 25910 ATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATG 25969
|| || || ||||| || |||| ||||| || ||||| || ||||| || || || |
Sbjct 89040 ATTGCTGCTCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTT 89099
Query 25970 TACGGAAACAATATAATATCAGGAGC 25995
|||||||||||||| || || || ||
Sbjct 89100 TACGGAAACAATATTATTTCTGGTGC 89125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146647839750912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |