Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq15224 203 1e-47 >seq15224 Length=172684 Score = 203 bits (224), Expect = 1e-47 Identities = 288/405 (71%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 26188 TGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACA 26247 ||||||| |||| || | | || ||| || || ||||| | ||||| | || || Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377 Query 26248 AGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGT 26307 ||| || ||| |||||| |||||| | || || ||||||||||| ||||| ||| | || Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437 Query 26308 ATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGT 26367 |||||| || || || || || || ||||||||||| || ||| ||||| ||||| || Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497 Query 26368 TTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGC 26427 ||||| || | || || ||||||||| || ||||| ||||| | ||| Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557 Query 26428 AGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGAC 26487 ||||| ||||| | | || ||| | || || | ||||| ||||| ||||| || Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617 Query 26488 ATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTT 26547 |||||||| || ||||| || | || ||||| |||| || || || ||||| ||||| Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677 Query 26548 TAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGT 26592 || || ||||||| | || ||||| | ||| |||||||||| Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722 Score = 84.2 bits (92), Expect = 6e-12 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 25919 CCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAAC 25978 ||||| || |||| ||||| || ||||| || ||||| || || || | ||||||||| Sbjct 89144 CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAAC 89203 Query 25979 AATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCG 26038 ||||| || || || || | | || | ||| || || || | |||||||| || Sbjct 89204 AATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCA 89263 Query 26039 ATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATAT 26089 || |||||||| | | | || |||||| |||| ||||| || || ||| Sbjct 89264 ATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTAT 89314 Score = 82.4 bits (90), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 13/206 (6%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGG------- 25854 || ||| | ||| | || || ||||| ||||| || || | |||||||| || Sbjct 88921 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATCGGATGGTTTGGAGATGGT 88980 Query 25855 --GGTGCTT--ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTC 25909 |||| || ||||| || ||| | | || ||| | ||| ||||| | |||||| Sbjct 88981 TTGGTGTTTTGATGATTCCTACATTATTGACTGCAACTTC-TGTATTTATTATAGCCTTC 89039 Query 25910 ATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATG 25969 || || || ||||| || |||| ||||| || ||||| || ||||| || || || | Sbjct 89040 ATTGCTGCTCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTT 89099 Query 25970 TACGGAAACAATATAATATCAGGAGC 25995 |||||||||||||| || || || || Sbjct 89100 TACGGAAACAATATTATTTCTGGTGC 89125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146647839750912