Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq15224 244 3e-60
>seq15224
Length=172684
Score = 244 bits (270), Expect = 3e-60
Identities = 302/412 (73%), Gaps = 1/412 (0%)
Strand=Plus/Minus
Query 36165 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGG 36224
|| ||||||||||| | |||||| |||||| ||| ||| || || |||||||| |||
Sbjct 89722 ACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGG 89663
Query 36225 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 36284
||||| | || ||||| || ||||||| || || || ||||| || ||||| |||||
Sbjct 89662 AAGATCAATCGACCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 89603
Query 36285 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAA 36344
|| ||| | || || | || ||||||| | || ||||| | ||| | |||
Sbjct 89602 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 89543
Query 36345 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 36404
|| || | || ||||||||| |||| | || |||||||| || || |||||
Sbjct 89542 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCC 89483
Query 36405 AGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTG 36464
| ||| || || || ||||||||||| ||||| || ||||| || |||| ||| || |||
Sbjct 89482 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 89423
Query 36465 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 36524
||||| || ||||| || | ||||||||||||||| || || ||||| |||| || |||
Sbjct 89422 AAAGTACCAGAAATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAG 89363
Query 36525 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATA 36576
| ||||| || ||| || |||||||| || |||||||| || || ||||
Sbjct 89362 ATCAAGAAAACGGCAGTAGCCGCTGCAACCGGAGCTGAATATGC-ACTCATA 89312
Score = 93.3 bits (102), Expect = 1e-14
Identities = 127/176 (72%), Gaps = 1/176 (1%)
Strand=Plus/Minus
Query 36668 ATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAA 36727
||| || || || |||||||||||||| || | | ||| |||||||| ||||| || ||
Sbjct 89314 ATAAGGACCACCATTATATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAA 89255
Query 36728 GTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATA 36787
|| | || || || || | || | || || ||||| || || |||||||| ||
Sbjct 89254 ATGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTA 89195
Query 36788 GAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAG 36843
|||| | ||| || ||||| |||||||| ||||| |||| || || || ||||
Sbjct 89194 AAGTAGAGATCCCGAAACAGGTTCACGAATCCCATCAATATTGACTGGCGG-GCAG 89140
Score = 86.0 bits (94), Expect = 2e-12
Identities = 128/182 (70%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 36123 GCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGG 36182
||||||||| | || | ||| |||| ||| || | || ||||||||||| | |
Sbjct 89915 GCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCGACTACCGGCCAAGCAGCTAAG 89856
Query 36183 AAGAAATGTAAACTGCGGCTATTATTAAAGCTAGC------ATACTGGAAGATGAGTCTC 36236
||||| |||||| || ||| || || ||||| ||| |||||||| | ||
Sbjct 89855 AAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGATATTGGAAGATCAATCGA 89796
Query 36237 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 36296
||||| || |||||||| || || || ||||| || ||||| ||||| || ||| | ||
Sbjct 89795 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAA 89736
Query 36297 CC 36298
||
Sbjct 89735 CC 89734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150373843705152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |