Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq15224 244 3e-60 >seq15224 Length=172684 Score = 244 bits (270), Expect = 3e-60 Identities = 302/412 (73%), Gaps = 1/412 (0%) Strand=Plus/Minus Query 36165 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGG 36224 || ||||||||||| | |||||| |||||| ||| ||| || || |||||||| ||| Sbjct 89722 ACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGG 89663 Query 36225 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 36284 ||||| | || ||||| || ||||||| || || || ||||| || ||||| ||||| Sbjct 89662 AAGATCAATCGACCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 89603 Query 36285 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAA 36344 || ||| | || || | || ||||||| | || ||||| | ||| | ||| Sbjct 89602 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 89543 Query 36345 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 36404 || || | || ||||||||| |||| | || |||||||| || || ||||| Sbjct 89542 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCC 89483 Query 36405 AGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTG 36464 | ||| || || || ||||||||||| ||||| || ||||| || |||| ||| || ||| Sbjct 89482 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 89423 Query 36465 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 36524 ||||| || ||||| || | ||||||||||||||| || || ||||| |||| || ||| Sbjct 89422 AAAGTACCAGAAATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAG 89363 Query 36525 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATA 36576 | ||||| || ||| || |||||||| || |||||||| || || |||| Sbjct 89362 ATCAAGAAAACGGCAGTAGCCGCTGCAACCGGAGCTGAATATGC-ACTCATA 89312 Score = 93.3 bits (102), Expect = 1e-14 Identities = 127/176 (72%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 36668 ATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAA 36727 ||| || || || |||||||||||||| || | | ||| |||||||| ||||| || || Sbjct 89314 ATAAGGACCACCATTATATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAA 89255 Query 36728 GTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATA 36787 || | || || || || | || | || || ||||| || || |||||||| || Sbjct 89254 ATGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTA 89195 Query 36788 GAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAG 36843 |||| | ||| || ||||| |||||||| ||||| |||| || || || |||| Sbjct 89194 AAGTAGAGATCCCGAAACAGGTTCACGAATCCCATCAATATTGACTGGCGG-GCAG 89140 Score = 86.0 bits (94), Expect = 2e-12 Identities = 128/182 (70%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 36123 GCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGG 36182 ||||||||| | || | ||| |||| ||| || | || ||||||||||| | | Sbjct 89915 GCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCGACTACCGGCCAAGCAGCTAAG 89856 Query 36183 AAGAAATGTAAACTGCGGCTATTATTAAAGCTAGC------ATACTGGAAGATGAGTCTC 36236 ||||| |||||| || ||| || || ||||| ||| |||||||| | || Sbjct 89855 AAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGATATTGGAAGATCAATCGA 89796 Query 36237 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 36296 ||||| || |||||||| || || || ||||| || ||||| ||||| || ||| | || Sbjct 89795 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAA 89736 Query 36297 CC 36298 || Sbjct 89735 CC 89734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150373843705152