Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq15224 246 9e-61 >seq15224 Length=172684 Score = 246 bits (272), Expect = 9e-61 Identities = 299/405 (74%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5387 ACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGG 5446 || ||||||| ||| | |||||| |||||| |||| |||||| || |||||||| ||| Sbjct 89722 ACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGG 89663 Query 5447 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGG 5506 ||||| | || ||||| || ||||||| || || || ||||| |||||||||||||| Sbjct 89662 AAGATCAATCGACCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 89603 Query 5507 CCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAA 5566 || ||| | || || | || ||| | | || ||||| | ||| | |||| Sbjct 89602 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 89543 Query 5567 GTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCG 5626 || || | |||||||||||| || | | || |||||||| ||||| ||||| Sbjct 89542 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCC 89483 Query 5627 AGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTA 5686 | |||||| || || ||||||||||| ||||| || ||||||||||| | ||| ||||| Sbjct 89482 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 89423 Query 5687 AAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTAT 5746 ||||||||||| || || | ||||||||||||| || ||||| || || | || || Sbjct 89422 AAAGTACCAGAAATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAG 89363 Query 5747 ACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGC 5790 | || || || | ||||| | || |||||||| ||||||||||| Sbjct 89362 ATCAAGAAAACGGCAGTAGCC-GCTGCAACCGGAGCTGAATATGC 89319 Score = 125 bits (138), Expect = 2e-24 Identities = 153/209 (73%), Gaps = 11/209 (5%) Strand=Plus/Minus Query 5980 AACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTAT 6039 || ||| || || || || |||||||| || ||||||||||| | || |||||||| || Sbjct 89129 AATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCCGAAACAGGTTCACGAAT 89070 Query 6040 GCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGT 6099 || || || | |||||| || ||||| | ||| |||| |||||| ||| |||||| || Sbjct 89069 CCCATCAATATTGACTGGCGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGT 89010 Query 6100 TAAGAGTGCGGGTATCATTAAGACACCAAACCA-CCCCACA----------TAGAGGCGG 6148 || | || || ||||| || ||||||||||| | ||| | || |||||| Sbjct 89009 CAATAATGTAGGAATCATCAAAACACCAAACCATCTCCAAACCATCCGATGTAAAGGCGG 88950 Query 6149 TTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || | |||||||| | ||||| |||||| Sbjct 88949 TTTTCAGTGCTAGTTATCCAGTTACAGAA 88921 Score = 109 bits (120), Expect = 2e-19 Identities = 133/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 5345 GCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGG 5404 ||||||||| || || | || |||| ||| || | || || ||||||| ||| | | Sbjct 89915 GCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCGACTACCGGCCAAGCAGCTAAG 89856 Query 5405 AAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTG------GAAGATGAGTCTC 5458 ||||| |||||| ||| |||||| || |||||||| || |||||| | || Sbjct 89855 AAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGATATTGGAAGATCAATCGA 89796 Query 5459 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATAT 5518 ||||| || |||||||| || || || ||||| |||||||||||||| || ||| | || Sbjct 89795 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAA 89736 Query 5519 CC 5520 || Sbjct 89735 CC 89734 Score = 96.9 bits (106), Expect = 1e-15 Identities = 127/175 (73%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 5891 TATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAG 5950 || || || ||||| || | ||| ||||| | | ||||||||||| || ||||| || Sbjct 89313 TAAGGACCACCATTATATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAA 89254 Query 5951 TGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAG 6010 || ||||| || || || | || | || ||| || || || || |||||||| || Sbjct 89253 TGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAA 89194 Query 6011 AGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAG 6065 ||||||||||| | || |||||||| || || || || | |||||| || |||| Sbjct 89193 AGTAGAGATCCCGAAACAGGTTCACGAATCCCATCAATATTGACTGGCGG-GCAG 89140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152567868351168