Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq15224 246 9e-61
>seq15224
Length=172684
Score = 246 bits (272), Expect = 9e-61
Identities = 299/405 (74%), Gaps = 2/405 (0%)
Strand=Plus/Minus
Query 5387 ACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGG 5446
|| ||||||| ||| | |||||| |||||| |||| |||||| || |||||||| |||
Sbjct 89722 ACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGG 89663
Query 5447 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGG 5506
||||| | || ||||| || ||||||| || || || ||||| ||||||||||||||
Sbjct 89662 AAGATCAATCGACCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 89603
Query 5507 CCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAA 5566
|| ||| | || || | || ||| | | || ||||| | ||| | ||||
Sbjct 89602 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 89543
Query 5567 GTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCG 5626
|| || | |||||||||||| || | | || |||||||| ||||| |||||
Sbjct 89542 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCC 89483
Query 5627 AGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTA 5686
| |||||| || || ||||||||||| ||||| || ||||||||||| | ||| |||||
Sbjct 89482 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 89423
Query 5687 AAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTAT 5746
||||||||||| || || | ||||||||||||| || ||||| || || | || ||
Sbjct 89422 AAAGTACCAGAAATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAG 89363
Query 5747 ACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGC 5790
| || || || | ||||| | || |||||||| |||||||||||
Sbjct 89362 ATCAAGAAAACGGCAGTAGCC-GCTGCAACCGGAGCTGAATATGC 89319
Score = 125 bits (138), Expect = 2e-24
Identities = 153/209 (73%), Gaps = 11/209 (5%)
Strand=Plus/Minus
Query 5980 AACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTAT 6039
|| ||| || || || || |||||||| || ||||||||||| | || |||||||| ||
Sbjct 89129 AATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCCGAAACAGGTTCACGAAT 89070
Query 6040 GCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGT 6099
|| || || | |||||| || ||||| | ||| |||| |||||| ||| |||||| ||
Sbjct 89069 CCCATCAATATTGACTGGCGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGT 89010
Query 6100 TAAGAGTGCGGGTATCATTAAGACACCAAACCA-CCCCACA----------TAGAGGCGG 6148
|| | || || ||||| || ||||||||||| | ||| | || ||||||
Sbjct 89009 CAATAATGTAGGAATCATCAAAACACCAAACCATCTCCAAACCATCCGATGTAAAGGCGG 88950
Query 6149 TTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
|| | |||||||| | ||||| ||||||
Sbjct 88949 TTTTCAGTGCTAGTTATCCAGTTACAGAA 88921
Score = 109 bits (120), Expect = 2e-19
Identities = 133/182 (73%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 5345 GCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGG 5404
||||||||| || || | || |||| ||| || | || || ||||||| ||| | |
Sbjct 89915 GCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCGACTACCGGCCAAGCAGCTAAG 89856
Query 5405 AAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTG------GAAGATGAGTCTC 5458
||||| |||||| ||| |||||| || |||||||| || |||||| | ||
Sbjct 89855 AAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGATATTGGAAGATCAATCGA 89796
Query 5459 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATAT 5518
||||| || |||||||| || || || ||||| |||||||||||||| || ||| | ||
Sbjct 89795 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAA 89736
Query 5519 CC 5520
||
Sbjct 89735 CC 89734
Score = 96.9 bits (106), Expect = 1e-15
Identities = 127/175 (73%), Gaps = 1/175 (1%)
Strand=Plus/Minus
Query 5891 TATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAG 5950
|| || || ||||| || | ||| ||||| | | ||||||||||| || ||||| ||
Sbjct 89313 TAAGGACCACCATTATATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAA 89254
Query 5951 TGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAG 6010
|| ||||| || || || | || | || ||| || || || || |||||||| ||
Sbjct 89253 TGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAA 89194
Query 6011 AGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAG 6065
||||||||||| | || |||||||| || || || || | |||||| || ||||
Sbjct 89193 AGTAGAGATCCCGAAACAGGTTCACGAATCCCATCAATATTGACTGGCGG-GCAG 89140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152567868351168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |