Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_016659.1
Length=47536
Score E
Sequences producing significant alignments: (Bits) Value
seq15224 248 3e-61
>seq15224
Length=172684
Score = 248 bits (274), Expect = 3e-61
Identities = 303/412 (74%), Gaps = 1/412 (0%)
Strand=Plus/Minus
Query 25645 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGG 25704
|| ||||||||||| | |||||| |||||| |||| ||| || || |||||||| |||
Sbjct 89722 ACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGG 89663
Query 25705 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 25764
||||| | || ||||| || ||||||| || || || ||||| || ||||| |||||
Sbjct 89662 AAGATCAATCGACCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 89603
Query 25765 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAA 25824
|| ||| | || || | || ||||||| | || ||||| | ||| | |||
Sbjct 89602 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 89543
Query 25825 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 25884
|| || | || ||||||||| |||| | || |||||||| || || |||||
Sbjct 89542 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCC 89483
Query 25885 AGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTG 25944
| ||| || || || ||||||||||| ||||| || ||||| || |||| ||| || |||
Sbjct 89482 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 89423
Query 25945 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 26004
||||| || ||||| || | ||||||||||||||| || || ||||| |||| || |||
Sbjct 89422 AAAGTACCAGAAATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAG 89363
Query 26005 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATA 26056
| ||||| || ||| || |||||||| || |||||||| || || ||||
Sbjct 89362 ATCAAGAAAACGGCAGTAGCCGCTGCAACCGGAGCTGAATATGC-ACTCATA 89312
Score = 91.5 bits (100), Expect = 4e-14
Identities = 129/182 (71%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 25603 GCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGG 25662
||||||||| | || | ||| |||| ||| || | || ||||||||||| | |
Sbjct 89915 GCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCGACTACCGGCCAAGCAGCTAAG 89856
Query 25663 AAGAAATGTAAACTACGGCTATTATTAAAGCTAGC------ATACTGGAAGATGAGTCTC 25716
||||| |||||| ||| ||| || || ||||| ||| |||||||| | ||
Sbjct 89855 AAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGATATTGGAAGATCAATCGA 89796
Query 25717 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 25776
||||| || |||||||| || || || ||||| || ||||| ||||| || ||| | ||
Sbjct 89795 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAA 89736
Query 25777 CC 25778
||
Sbjct 89735 CC 89734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151912219586688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |