Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq12168 114 1e-20 seq13853 113 3e-20 seq16084 104 2e-17 seq13580 98.7 8e-16 seq15654 96.9 3e-15 seq15753 95.1 9e-15 seq14446 91.5 1e-13 seq5777 84.2 2e-11 >seq12168 Length=30050 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||||||||| ||| || || || |||||||| ||||| || | | | ||| || Sbjct 8294 CGCAACACCAGATGGAGGGTCGATTCCTTTTGAATGTTGTAGTCGGCCAACGTACGACCG 8353 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | |||||| || |||||||||| || |||||| || | ||| | ||||||||| Sbjct 8354 TCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGGGGGATACCCTCCTTG 8413 Query 48672 TCGCTAATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAAT 48730 || || | |||||| || || | | | || || ||||||||||| ||| || Sbjct 8414 TC-CTGAATTTTTGTCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCCAGCGTGAT 8472 Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| ||||| |||||||| || | || ||||||||| Sbjct 8473 CGTCTTTCCTGTCAAAGTCTTCAAGAAGATCTGCATC 8509 >seq13853 Length=43806 Score = 113 bits (124), Expect = 3e-20 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||| ||| || || | || ||| |||| ||||| || | | | ||| Sbjct 9511 AGACGCAACACCAGATGGAGGGT-CGATCCTTT-GAATGTTGTAGTCGGCCAATGTACGA 9454 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || |||||||||| || |||||| || | ||||| |||||| Sbjct 9453 CCGTCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGGGGAATACCCTCC 9394 Query 48669 TTGTCGCTAATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||||| || | |||||| || || | | | || || ||||||||| | || Sbjct 9393 TTGTC-CTGAATTTTTGTCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGT 9335 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||||| || || |||||||| || || |||||||||||| Sbjct 9334 AATCGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCATC 9295 Score = 105 bits (116), Expect = 5e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||| ||| || || || |||||||| ||||| || | | | ||| Sbjct 19551 AGACGCAACACCAGATGGAGGGTCGATTCCTTTTGAATGTTGTAGTCGGCCAACGTACGA 19492 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || |||||||||| || |||||| || | ||| | |||||| Sbjct 19491 CCGTCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGGGGGATACCCTCC 19432 Query 48669 TTGTCGCTAATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||||| || | |||||| || || | | | || || ||||||||| | || Sbjct 19431 TTGTC-CTGAATTTTTGTCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCTAGAGT 19373 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| ||||| |||||||| || || || || |||||| Sbjct 19372 GATCGTCTTTCCTGTCAAAGTCTTCACGAAGATTTGCATC 19333 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || | || ||| ||||||||||||||||| | | | || Sbjct 19095 AGACGCAACACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCTGCCAATGTGCGG 19036 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| || ||||| |||| | || || |||| |||| |||||| Sbjct 19035 CCGTCCTCGAGTTGCTTCCCAGCAAAAATCAACCTTTGCTGGTCCGGAGGAATACCCTCC 18976 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || || | | | || || ||| ||||| | ||| Sbjct 18975 TTATCCTGAATCTTAGTCTTAACGTTGTCAATTGTGTCCGAGCTCTCTACCTCGAGAGTA 18916 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| || || |||||||| || || |||||||||||| Sbjct 18915 ATCGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCATC 18877 >seq16084 Length=201933 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || ||||||||||| || ||||| || |||||||| ||||| || | | Sbjct 384 CCACCCCTGAGGCGCAACACCAAGTGAAGCGTTGATTCCTTTTGAATGTTGTAGTCGGCT 325 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| | || || | ||| || || ||||| || || || ||||| || | ||| Sbjct 324 AGTGTTCGTCCATCTTCGAGCTGTTTTCCCGCAAAAATTAGCCGTTGTTGGTCTGGTGGA 265 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||| || ||||| ||||| | | | || || ||| ||| Sbjct 264 ATCCCCTCCTTATCCTGGATCTTAGACTTTACGTTGTCGATCGTGTCAGAGTTCTCTACC 205 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || ||||| |||||||||||||| || ||||| || ||||| Sbjct 204 TCTAGGGTGATCGTCTTTCCCGTCAAAGTCTTGACAAAGATTTGCAT 158 >seq13580 Length=39997 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/194 (73%), Gaps = 5/194 (3%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAA-CTGCTTACCGGCAAA 48634 || |||||||| ||||| || | | | ||| |||| || | |||||| || ||||| Sbjct 5 TCCTTTTGAATGTTGTAGTCGGCCAATGTACGACCGTCCTCGAGGCTGCTTTCCAGCAAA 64 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTT-ACAG 48693 ||||| || |||||| || |||||| ||||||||||| ||| |||||| || || Sbjct 65 TATCAATCTCTGTTGGTC--TGGGAATACCCTCCTTGTCCTGAAT-TTTTGTCTTGACGT 121 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | | || || ||||||||| | |||||||| || || |||||||| || | Sbjct 122 TGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTAATCGTCTTACCAGTCAAAGTCTTGA 181 Query 48754 CAAAAATCTGCATC 48767 | |||||||||||| Sbjct 182 CGAAAATCTGCATC 195 >seq15654 Length=163759 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| || || ||||| ||||| |||| | | | ||| | || || Sbjct 112223 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAAAGTACGACCATCCTCG 112164 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || || ||||| ||||| | ||| || |||| || | ||||||||| || | Sbjct 112163 AGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGA 112104 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGC-CTCCACCTCCACCGTAATCGTTTT 48736 ||||| |||||| | | | | || | || ||| ||||| | || || || || Sbjct 112103 ATCTTAGTCTTTACATTATCGATGGTATC-GCTGCTCTCGACCTCGAGGGTGATGGTCTT 112045 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||||||| ||||| ||||||||||| Sbjct 112044 TCCCGTCAAAGTCTTTACGAAAATCTGCAT 112015 >seq15753 Length=130878 Score = 95.1 bits (104), Expect = 9e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| || || || |||||||| ||||| || | | | ||| Sbjct 123933 AGACGCAACACCAAATGGAGGGTCGATTCCTTTTGAATGTTGTAGTCGGCCAACGTACGA 123992 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || |||||||||| || |||||| || | || | ||| || Sbjct 123993 CCGTCTTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGAGGGATACCCCCC 124052 Query 48669 TTGTCGCTAATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||||| ||| |||||| || || | | | || || ||||||||| | ||| Sbjct 124053 TTGTCCGGAAT-TTTTGTCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCTAGCGT 124111 Query 48728 AATCGTTTTTCCCGTCAAAGT 48748 ||||| ||||| |||||||| Sbjct 124112 GATCGTCTTTCCTGTCAAAGT 124132 >seq14446 Length=62709 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||||||||||||| || || ||| || || ||||| || || | Sbjct 47587 GCCACCCCTGAGACGCAACACCAAATGGAGGGTCGACTCCTTCTGGATATTATAGTCTGC 47646 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | | || |||| || | ||| || |||||||| |||| | || || || | || Sbjct 47647 CAAAGTACGGCCGTCCTCGAGCTGTTTCCCGGCAAAGATCAACCTTTGCTGGTCTGGTGG 47706 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC-CTCCA 48717 | |||||||||||| |||||| || ||| | | | || | || ||| | Sbjct 47707 GATGCCCTCCTTGTCCTGGATCTTTGTCTTGACATTGTCAATCGTGTC-GCTGCTCTCAA 47765 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| | ||||| || ||||| ||||| || || ||||| |||||||| Sbjct 47766 CCTCAAGGGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAGATCTGCAT 47814 >seq5777 Length=13417 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || |||||||||| || |||||| || | ||| | ||||||||||| ||| ||| Sbjct 13417 TTTCCAGCAAATATCAATCTCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTGAAT-TTT 13359 Query 48684 TGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| || || | | | || || ||||||||||| ||| ||||| ||||| || Sbjct 13358 TGTCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCCAGCGTGATCGTCTTTCCTGT 13299 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 |||||| || || || ||||||||| Sbjct 13298 CAAAGTCTTCACGAAGATCTGCATC 13274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380728270979424