Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq15224 268 1e-66
>seq15224
Length=172684
Score = 268 bits (296), Expect = 1e-66
Identities = 297/396 (75%), Gaps = 0/396 (0%)
Strand=Plus/Plus
Query 162885 TGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCA 162944
|||||| || || || || | || || || || |||||| ||||||| | |||||
Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377
Query 162945 AGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGT 163004
||| || ||||| | |||||| | || |||||||||||||| |||| |||| | ||
Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437
Query 163005 GTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGT 163064
||||| || |||||||||||||| |||||||| || || ||| | || || || |||||
Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497
Query 163065 ATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAG 163124
|||||| || || || |||||||||||||| ||||| | || |||||| | | || ||
Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557
Query 163125 AGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGAC 163184
||||| || || | || || || | ||||| | || || ||||| ||||| ||
Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617
Query 163185 TTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTT 163244
||| || || || |||||||||| || |||||||| ||||||||||| ||||| |||
Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677
Query 163245 CAACAACTCACGTTCACTTCACTTCTTCCTTGCTGC 163280
|||||| || ||||| | ||||||||| | |||||
Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGC 89713
Score = 125 bits (138), Expect = 8e-24
Identities = 129/169 (76%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 162616 CCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAAC 162675
|| ||||| |||| ||||| || | ||||||||| | || || || || || || |||
Sbjct 89144 CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAAC 89203
Query 162676 AACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCT 162735
|| || || |||||||| | |||||| ||| ||||| || | || || |||||
Sbjct 89204 AATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCA 89263
Query 162736 ATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTT 162784
|| |||||||||||| || ||||||||||||| ||||||||||| ||||
Sbjct 89264 ATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312
Score = 113 bits (124), Expect = 5e-20
Identities = 134/182 (74%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215
||||| | || || ||||| ||||| ||||| || || || ||||||||||| || |||
Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793
Query 163216 GGTCGCTTGATCTTC------CAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTC 163269
||||| ||||||||| || ||||| ||||||||| || ||||| | ||||||
Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853
Query 163270 TTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATG 163329
||| | ||||| | || || ||| | || ||||| ||||| | ||| | ||||||
Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913
Query 163330 GC 163331
||
Sbjct 89914 GC 89915
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552773081406720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |