Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq15224 268 1e-66 >seq15224 Length=172684 Score = 268 bits (296), Expect = 1e-66 Identities = 297/396 (75%), Gaps = 0/396 (0%) Strand=Plus/Plus Query 162885 TGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCA 162944 |||||| || || || || | || || || || |||||| ||||||| | ||||| Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377 Query 162945 AGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGT 163004 ||| || ||||| | |||||| | || |||||||||||||| |||| |||| | || Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437 Query 163005 GTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGT 163064 ||||| || |||||||||||||| |||||||| || || ||| | || || || ||||| Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497 Query 163065 ATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAG 163124 |||||| || || || |||||||||||||| ||||| | || |||||| | | || || Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557 Query 163125 AGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGAC 163184 ||||| || || | || || || | ||||| | || || ||||| ||||| || Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617 Query 163185 TTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTT 163244 ||| || || || |||||||||| || |||||||| ||||||||||| ||||| ||| Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677 Query 163245 CAACAACTCACGTTCACTTCACTTCTTCCTTGCTGC 163280 |||||| || ||||| | ||||||||| | ||||| Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGC 89713 Score = 125 bits (138), Expect = 8e-24 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 162616 CCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAAC 162675 || ||||| |||| ||||| || | ||||||||| | || || || || || || ||| Sbjct 89144 CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAAC 89203 Query 162676 AACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCT 162735 || || || |||||||| | |||||| ||| ||||| || | || || ||||| Sbjct 89204 AATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCA 89263 Query 162736 ATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTT 162784 || |||||||||||| || ||||||||||||| ||||||||||| |||| Sbjct 89264 ATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312 Score = 113 bits (124), Expect = 5e-20 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| | || || ||||| ||||| ||||| || || || ||||||||||| || ||| Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 163216 GGTCGCTTGATCTTC------CAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTC 163269 ||||| ||||||||| || ||||| ||||||||| || ||||| | |||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 163270 TTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATG 163329 ||| | ||||| | || || ||| | || ||||| ||||| | ||| | |||||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 163330 GC 163331 || Sbjct 89914 GC 89915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552773081406720