Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq15224 237 5e-58 >seq15224 Length=172684 Score = 237 bits (262), Expect = 5e-58 Identities = 300/407 (74%), Gaps = 4/407 (1%) Strand=Plus/Minus Query 18027 ACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGG 18086 || ||||||||||| |||||||| |||| | | | |||||| || |||||||| ||| Sbjct 89722 ACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGG 89663 Query 18087 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGG 18146 ||||| | || ||||| || ||||||| || || |||||||| || ||||| ||||| Sbjct 89662 AAGATCAATCGACCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 89603 Query 18147 CCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAA 18206 |||||| | || || | || ||| ||| || || ||||| ||||| | ||| Sbjct 89602 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 89543 Query 18207 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 18266 || || | || ||||||||| |||| | || |||||||| || || ||||| Sbjct 89542 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCC 89483 Query 18267 AGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTG 18326 | ||| || || || ||||||||||| ||||| || || |||||||| | |||||| ||| Sbjct 89482 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 89423 Query 18327 AAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA- 18385 |||||||| ||| || | ||||||||||||||| || || ||||| |||| ||||| Sbjct 89422 AAAGTACCAGAAATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAG 89363 Query 18386 AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCA 18431 | | ||||| || | || | || ||||| || || || ||||| ||| Sbjct 89362 ATCAAGAAA-ACGGCAGTA-GCCGCTGCAACCGGAGCTGAATATGCA 89318 Score = 95.1 bits (104), Expect = 4e-15 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 17985 GCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAG 18044 ||||||||| || || | || |||| ||| || | || ||||||||||| ||| Sbjct 89915 GCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCGACTACCGGCCAAGCAGCTAAG 89856 Query 18045 AAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGC------ATACTGGAAGATGAGTCTC 18098 ||||| |||| | | |||||| || ||||| ||| |||||||| | || Sbjct 89855 AAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGATATTGGAAGATCAATCGA 89796 Query 18099 CCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTATAT 18158 ||||| || |||||||| || || |||||||| || ||||| ||||| |||||| | || Sbjct 89795 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAA 89736 Query 18159 CC 18160 || Sbjct 89735 CC 89734 Score = 89.7 bits (98), Expect = 2e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 18530 ATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAA 18589 ||| || || || |||||||||||||| || | | ||| |||||||| ||||| || || Sbjct 89314 ATAAGGACCACCATTATATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAA 89255 Query 18590 GTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATA 18649 || | || || || ||| | || | || || || || || || |||||||| || Sbjct 89254 ATGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTA 89195 Query 18650 GAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTAT 18688 |||| | ||| || ||||| |||||||| ||||| || Sbjct 89194 AAGTAGAGATCCCGAAACAGGTTCACGAATCCCATCAAT 89156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151237381102272