Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq11475 551 7e-152 seq15224 260 2e-64 seq8938 188 9e-43 seq15824 127 3e-24 seq10333 125 9e-24 seq14024 116 5e-21 seq12771 107 2e-18 seq15982 98.7 1e-15 >seq11475 Length=22225 Score = 551 bits (610), Expect = 7e-152 Identities = 732/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 11871 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 11930 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | ||||||||| || || || || || |||||||| ||| Sbjct 11931 TGAGCCGCCATCCAAGCACGAATACCTTCATTTAAGAGAATATTTTTGGTGTAGAAAGTC 11990 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | || |||||||| || |||||||| ||||| ||| Sbjct 11991 TCAAATTCAGGATCTTCGGCTGCACGTATTTCTTGGGAAACGAAGTCATAGGCACGTAGG 12050 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | || ||||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 12051 TTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 12110 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||| ||||| ||||| Sbjct 12111 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAAATTTGGGACCAA 12170 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 |||||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 12171 AAACGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCCCGG 12230 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||| || | | ||| || || || || |||| || || Sbjct 12231 AATGTATTTGCCCCATCACCATCCTCGAATAAAGTATTTTCTACGGTAGCACCATGAATA 12290 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | |||| | ||| ||||| ||||||||||| || ||||| ||| Sbjct 12291 GCGCATAGCAGAGCGGCGCCCAATACACCAGCAACTCCCATCATATGAAAAGGGTTCAGC 12350 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| ||| || ||||| |||||||| Sbjct 12351 GTCCAATTATGAAACCCTTGAAAAAAGAGGATGAATCGAAAAATAGCTGCTACACCAAAA 12410 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| || || || || ||||| || || || ||| |||||| Sbjct 12411 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAATACAGAAACAAAA 12470 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || || ||||| || || ||||| || || || | | || | | ||| Sbjct 12471 ACAGCAATTGGGCCCGAGAATGCTATTGCATTATAAGGGCGCAATTGAACAGATCGAGCA 12530 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | |||||||| || | ||| ||||| || || | || ||||| || ||||| |||||| Sbjct 12531 AGTTCGAATTGGCGTAACATAAAACCTATTAGTCCGAAAGCACCATGAAGAGCAACAAAA 12590 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | ||||| ||||| |||||||||||||| Sbjct 12591 GTCCACAGGCCGCCTAATTGACACCAACGAGTAAAATCGCCTTGTGCTTCAGGACCCCAC 12650 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 || | | | ||| || | | | | |||||| || || || || || || | |||| Sbjct 12651 AGCAACAACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAAACGGCTGCGGTTAAGAAA 12710 Query 102550 TTAGCA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGT 102608 || ||| ||||| | || | || | ||| || |||||||| ||||| ||||||| Sbjct 12711 TT-GCAGCCTTCCAAATATGAACTGGCCAACCCATGAGTATACCATGAAGTTACAAACGT 12769 Query 102609 CGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGA 102668 ||| || |||| ||| ||||| | |||| ||||||| ||||| || | ||| ||||| Sbjct 12770 CGTACCTGTAAACCAACCCCCTACAGCGAAATAAGCACAAGGAAAGAGCAATAGACCAGA 12829 Query 102669 CCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||||| ||||| || || || |||| | ||||||||||| || ||||| Sbjct 12830 CCAACCTACAAAAACGAAACGGTCTCTACGTAACCAGTCATCCATAATATCAAA 12883 >seq15224 Length=172684 Score = 260 bits (288), Expect = 2e-64 Identities = 282/371 (76%), Gaps = 2/371 (1%) Strand=Plus/Minus Query 103401 GGGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTA 103460 |||| |||||||| || |||||||||||||| ||||| || ||| ||||||| |||| Sbjct 89688 GGGAATTGTTGAAACTAGCATATTGGAAGATCAATCGACCAAAATAAACATGAGCAGCTA 89629 Query 103461 CGATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTT 103520 |||| || || || ||||||||||| || || ||||||| | || ||||||| ||| Sbjct 89628 CGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTT 89569 Query 103521 CAGTCGTCTCACGAACCAG-CGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGT 103579 | || || || | || || | || | || |||| ||||| ||||||||||| || || Sbjct 89568 CTGTGGTTTCCCTAATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTAAATAGG 89510 Query 103580 GAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGT 103639 || || ||||| || ||||| || |||| |||||| || |||||||| || ||||| || Sbjct 89509 GAGCCGCCGAATACACCAGCTACACCCAACATGTGAAATGGGTGCATAAGGATGTTGTGC 89450 Query 103640 TCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCG 103699 || || ||||| || | |||| ||||||| || || ||||| || ||||||||| |||| Sbjct 89449 TCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAAAGGCATACCATCA 89390 Query 103700 GAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGA 103759 || || |||||||||| || |||| |||||| || || | || || ||||| ||| Sbjct 89389 GAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAAACGGCAGTAGCCGCTGCAACCGGA 89330 Query 103760 GCAGAGTATGC 103770 || || ||||| Sbjct 89329 GCTGAATATGC 89319 Score = 118 bits (130), Expect = 1e-21 Identities = 130/171 (76%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 103872 AAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGT 103931 |||||||||| ||||| | ||||||||||| ||||||||||||||| || ||||| || | Sbjct 89312 AAGGACCACCATTATATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAAT 89253 Query 103932 GAAGACCAATTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTA 103989 | | || || || || || || |||| || |||||||| || || ||||| ||||| Sbjct 89252 GCAACCCTATAGC--TGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTA 89195 Query 103990 CATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGG 104040 | || || || | || ||||||||||| || || |||| ||| || || Sbjct 89194 AAGTAGAGATCCCGAAACAGGTTCACGAATCCCATCAATATTGACTGGCGG 89144 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 103421 TATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCC 103480 |||||||||||||| ||||| || ||||||||||| |||||||| || || || |||||| Sbjct 89813 TATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCC 89754 Query 103481 TCTTGTCCGAACTTGTAACC 103500 ||||| || || ||||||| Sbjct 89753 TCTTGACCAAATCTGTAACC 89734 >seq8938 Length=12132 Score = 188 bits (208), Expect = 9e-43 Identities = 244/335 (73%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 101704 TATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGT 101763 ||| | |||||||| || | || | ||||| ||||| |||| || ||||||||| || Sbjct 1717 TATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGC 1776 Query 101764 TGATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAG 101823 ||||| | ||| ||| ||||| | ||||||||| || || || || || |||||| Sbjct 1777 TGATCTTGAGCCACCATCCAAGCACGAATACCTTCATTTAAGAGAATATTTTTGGTGTAG 1836 Query 101824 AACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCT--CTTGGGATACAAAGTCATAAG 101881 || ||||| || || |||||||| ||||| | || | ||||||| || |||||||| | Sbjct 1837 AAAGTCTCAAATTCAGGATCTTCGGCTGCACGTATATTTCTTGGGAAACGAAGTCATAGG 1896 Query 101882 CACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAG 101941 |||| ||||| | || ||||| | | || | | ||| |||| | | | | || | Sbjct 1897 CACGTAGGTTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAAACGGTTACTG 1956 Query 101942 GAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTT 102001 | ||||| | |||||||||||| ||||| || ||||| ||| |||| ||||| | || Sbjct 1957 GTACAAATAACATAAAGAAATGTAACCAACTTTTATTGGAAAAAGCAACCCCAAAAAGTT 2016 Query 102002 GAGACCAGAAACGGTTTGCTGTAACCATTGAATAA 102036 | ||||| |||||||| || || | ||| ||||| Sbjct 2017 GGGACCAAAAACGGTTAGCGGTGA--ATTAAATAA 2049 >seq15824 Length=139560 Score = 127 bits (140), Expect = 3e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 102166 CCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAAT 102225 ||||||||||| || | ||| ||||||| ||||| || || || | || || | |||| Sbjct 61117 CCCATCATATGAAAAGAGTTCTGCGTCCAATTATGAAACCCTTGAAAAAATAGGATGAAT 61176 Query 102226 CTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGA 102285 | ||| || ||||| |||||||| |||||||||||||||| || || | || ||| Sbjct 61177 CGAAAAATAGCTGCTACACCAAAACTAGGCGCAAAGAACCAACCAGATTGATCTAGTGGA 61236 Query 102286 TAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTAC 102345 || || || || ||| ||||||||||| || || || ||||| || || ||||| || Sbjct 61237 TAAATTAGGAATACAGAAACAAAAACAGCAATTGGGCCCGAGAATGCTATTGCATTATAA 61296 Query 102346 GGACGAATTCCAATTAACCTAGCCAACTCGAATTGACG 102383 || || | | ||| | | ||| | |||||||| || Sbjct 61297 GGGCGCAATTAAATAGATCGAGCAAGTTCGAATTGGCG 61334 >seq10333 Length=16991 Score = 125 bits (138), Expect = 9e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 101924 TCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAA 101983 |||| | ||| | || || ||||| | |||||||||||| ||||| | ||||| || Sbjct 6884 TCCATAAACCTGTTACTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAA 6825 Query 101984 ATGCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTT 102043 | |||| ||||| ||||| ||||| |||||||| || || |||||||||||||| |||| Sbjct 6824 AAGCAACCCCAAAAATTTGGGACCAAAAACGGTTAGCGGTGACCATTGAATAAGTTTCTT 6765 Query 102044 CCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAG 102103 | |||| || | | || || ||| || ||||| ||||||||| || | | || Sbjct 6764 CAGCTTGAGTTGGGTTAAAAGCCCGGAATGTATTTGCCCCATCACCATCCTCGAATAAAG 6705 Query 102104 TGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCA 102162 | || || || || |||| || || || | ||||| || | |||| | ||| ||| Sbjct 6704 TATTTTCTACGGTAGCACCATGAATAGCGCATAGCAGAGCGGCGCCCAATACACCAGCA 6646 >seq14024 Length=49420 Score = 116 bits (128), Expect = 5e-21 Identities = 242/355 (68%), Gaps = 9/355 (3%) Strand=Plus/Minus Query 102375 GAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCA 102434 |||||| || | ||| | ||| || || | || ||||| || ||||| ||||||| ||| Sbjct 34989 GAATTGGCGTAACATAAGACCTATTAGTCCGAAAGCACCATGAAGAGCAACAAAAGTCCA 34930 Query 102435 GAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCA-AAGTA 102493 | || || | ||| ||| | ||||| ||||| |||||||||||||| || | Sbjct 34929 CTGGCCGCCTAATTGACGCCAACGAGTAAAATCGCCTTGTGCTTCAGGACCCCACAACAA 34870 Query 102494 GAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAATTAG 102553 || || ||| || | | | | |||||| || || | || || | |||||| | Sbjct 34869 CAACAA-AGAGTGTGCTAAACTATTAGCAGGAGTAGAATCGATTGCGGTTAAGAAATT-G 34812 Query 102554 CA-CCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGTCGTG 102612 || ||||| | || | || | ||| || |||||||| ||||| |||||||||| Sbjct 34811 CAGCCTTCCAAATATGAACTGGCCATCCCATGAGTATACCATGAAGTTACAAACGTCGTA 34752 Query 102613 CC-----AGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAG 102667 || | ||| ||| ||||| | || | ||||||| ||||| || | ||| || | Sbjct 34751 CCTGTAAATTAAACCAACCCCCTACAGCAAAATAAGCACAAGGAAAGAGCAATAGACCCG 34692 Query 102668 ACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 || |||| ||||| || || |||||| | ||||||||||| || ||||| Sbjct 34691 ACTAACCTACAAAAACGAAATGATCTCTACGTAACCAGTCATCCATAATATCAAA 34637 >seq12771 Length=31889 Score = 107 bits (118), Expect = 2e-18 Identities = 168/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 102166 CCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAAT 102225 ||||||||||| || ||||| | |||||| ||||| || || | | ||||| | | || Sbjct 8370 CCCATCATATGAAAAGGGTTCAACGTCCAATTATGAAACCCTCGAAAAAAGAGGATGGAT 8429 Query 102226 CTAAATATCGCTGCAACA----CCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAG 102281 | ||| || | ||| ||| ||||| |||||||||||||||| || || | || Sbjct 8430 CGAAAAATAGTTGCTACATACACCAAAACTAGGCGCAAAGAACCAACCAGATTGATCTAG 8489 Query 102282 AGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATT 102341 ||||| || || || ||| ||||||||| | || | || ||||| || || ||||| Sbjct 8490 TGGATAAATTAGGAATACAGAAACAAAAACAACAATTTGGCCCGAGAATGCTATTGCATT 8549 Query 102342 GTACGGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAG 102401 || || || | | || | | ||| | |||||||| || | ||| ||||| || || Sbjct 8550 ATAAGGGCGCAATTGAACAGATCGAGCAAGTTCGAATTGGCGTAACATAAAACCTATTAG 8609 >seq15982 Length=164312 Score = 98.7 bits (108), Expect = 1e-15 Identities = 184/269 (68%), Gaps = 11/269 (4%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || | ||| ||||| |||| || ||||||||| || ||||| Sbjct 21655 AGAGCGTTTCCACAGGGTAGAGCCTTCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 21596 Query 101770 ACTGGTGCCAACCATGCACGTAGA---------CCTTCATTCAATAGGATGTTCTTTGTG 101820 | |||| ||| ||||| | | |||||||| | || || || | ||| Sbjct 21595 TGAGCCGCCATCCAAGCACGAATAACCTGAATACCTTCATTGAG-AGAATATTTCTGGTG 21537 Query 101821 TAGAACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAA 101880 ||||| ||||| || | |||||||| ||||| | | | |||||||| || |||||||| Sbjct 21536 TAGAAAGTCTCAAATTTAGGATCTTCAGCTGCAC-GTTATCTTGGGAAACGAAGTCATAG 21478 Query 101881 GCACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACA 101940 ||||| ||||| | || | ||| | | | | | ||| |||| | ||| | | Sbjct 21477 GCACGTAGGTTCAAGGCCAAACCGACTAACTCAAGAGCACTCATCCATAAACCGGTTATT 21418 Query 101941 GGAACAAAGAGCATAAAGAAATGCAACCA 101969 || ||||| | |||||||||||| || || Sbjct 21417 GGTACAAACAACATAAAGAAATGTAATCA 21389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633156551735040