Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq15224 253 6e-63
>seq15224
Length=172684
Score = 253 bits (280), Expect = 6e-63
Identities = 299/405 (74%), Gaps = 0/405 (0%)
Strand=Plus/Minus
Query 21663 ACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGG 21722
|| ||||| ||||| | ||||| || | | ||||||||| || || ||||||||||||
Sbjct 89722 ACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGG 89663
Query 21723 AAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGA 21782
||||| | ||||||||||| | |||||||| || ||||| ||||| ||||||||||||
Sbjct 89662 AAGATCAATCGACCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 89603
Query 21783 CCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGAC 21842
||||| ||||||| | || || | | ||| || || || | ||| | ||
Sbjct 89602 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 89543
Query 21843 GTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCC 21902
|| |||| | ||| ||||||||| || | || || ||||| || || ||||||
Sbjct 89542 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCC 89483
Query 21903 AGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTG 21962
| ||||||||| || |||||||| || ||||||||||||||||| || | |||| |||||
Sbjct 89482 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 89423
Query 21963 AAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAA 22022
|| || || || || || || |||||| |||||||||| || || |||| |||||
Sbjct 89422 AAAGTACCAGAAATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAG 89363
Query 22023 ACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCA 22067
| | ||| || ||||| || || || || ||||| || || |||
Sbjct 89362 ATCAAGAAAACGGCAGTAGCCGCTGCAACCGGAGCTGAATATGCA 89318
Score = 138 bits (152), Expect = 3e-28
Identities = 127/161 (79%), Gaps = 6/161 (4%)
Strand=Plus/Minus
Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701
|||| |||||||||||| || || ||||| ||||| | ||||| || | | ||| |||
Sbjct 89894 GCAGTAAACCAAATACCGACTACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 89835
Query 21702 TTATTAAAGCTAGCATATTG------GAAGATAAGCCGACCAAAATAGCCGTGAGCAGCA 21755
|| || || ||||||||||| |||||| | ||||||||||| || ||||||||
Sbjct 89834 TTGTTGAAACTAGCATATTGATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCT 89775
Query 21756 ACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796
|| ||||| ||||| ||||||||||||||||| |||||||
Sbjct 89774 ACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAACC 89734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146129717312640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |