Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq15224 253 6e-63 >seq15224 Length=172684 Score = 253 bits (280), Expect = 6e-63 Identities = 299/405 (74%), Gaps = 0/405 (0%) Strand=Plus/Minus Query 21663 ACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGG 21722 || ||||| ||||| | ||||| || | | ||||||||| || || |||||||||||| Sbjct 89722 ACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGG 89663 Query 21723 AAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGA 21782 ||||| | ||||||||||| | |||||||| || ||||| ||||| |||||||||||| Sbjct 89662 AAGATCAATCGACCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 89603 Query 21783 CCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGAC 21842 ||||| ||||||| | || || | | ||| || || || | ||| | || Sbjct 89602 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 89543 Query 21843 GTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCC 21902 || |||| | ||| ||||||||| || | || || ||||| || || |||||| Sbjct 89542 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCC 89483 Query 21903 AGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTG 21962 | ||||||||| || |||||||| || ||||||||||||||||| || | |||| ||||| Sbjct 89482 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 89423 Query 21963 AAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAA 22022 || || || || || || || |||||| |||||||||| || || |||| ||||| Sbjct 89422 AAAGTACCAGAAATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAG 89363 Query 22023 ACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCA 22067 | | ||| || ||||| || || || || ||||| || || ||| Sbjct 89362 ATCAAGAAAACGGCAGTAGCCGCTGCAACCGGAGCTGAATATGCA 89318 Score = 138 bits (152), Expect = 3e-28 Identities = 127/161 (79%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| |||||||||||| || || ||||| ||||| | ||||| || | | ||| ||| Sbjct 89894 GCAGTAAACCAAATACCGACTACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 89835 Query 21702 TTATTAAAGCTAGCATATTG------GAAGATAAGCCGACCAAAATAGCCGTGAGCAGCA 21755 || || || ||||||||||| |||||| | ||||||||||| || |||||||| Sbjct 89834 TTGTTGAAACTAGCATATTGATATTGGAAGATCAATCGACCAAAATAACCATGAGCAGCT 89775 Query 21756 ACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796 || ||||| ||||| ||||||||||||||||| ||||||| Sbjct 89774 ACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAACC 89734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146129717312640