Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq16162 93.3 2e-14 >seq16162 Length=245457 Score = 93.3 bits (102), Expect = 2e-14 Identities = 158/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 ||||||||||||| ||||||||||| || ||||||| ||||| |||||||| || | | Sbjct 41309 TACCTTTTCTTTTGCCTCCACCTTGGTCAACGTATCGAGCAGTGTCATTGAACACCCTAA 41250 Query 26124 ACATTGGAACTAAT-CCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGAT 26182 ||| || |||| ||| |||| ||| ||||| | |||| | || || | Sbjct 41249 GCATCGG-GGTAATACCATTTGAGGTTCCATTTGTACCCCGAATGTAACTACCGGTTGCA 41191 Query 26183 CTAATATCGTGAGCAT-GA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT 26240 | ||||| |||| || || | ||| || |||||||| |||| |||| | ||||| | Sbjct 41190 CGAATATTGTGA--ATCGACACACCAATACCACCAGCAGATTTGCTAATAACAGCACACT 41133 Query 26241 CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | | |||||| | ||||||| ||||| || ||||||| Sbjct 41132 CCTTCAATGTATCATAGATTCCTTCAATGCTGTCCTCTTTCAT 41090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252900951989600