Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq11475 327 1e-84 seq15224 199 5e-46 seq8938 123 3e-23 seq14024 113 5e-20 seq12877 107 2e-18 seq15982 89.7 6e-13 seq5553 89.7 6e-13 >seq11475 Length=22225 Score = 327 bits (362), Expect = 1e-84 Identities = 697/1038 (67%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||| || || || ||||||| || || ||||| || || Sbjct 11867 TTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 11926 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || |||||||| | ||||| || || || ||||| Sbjct 11927 ATCTTGAGCCGCCATCCAAGCACGAATACCTTCATTTAAGAGAATATTTTTGGTGTAGAA 11986 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | ||| ||||| || || ||||| || || | Sbjct 11987 AGTCTCAAATTCAGGATCTTCGGCTGCACGTATTTCTTGGGAAACGAAGTCATAGGCACG 12046 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| | || ||||| || | || | || |||| | ||| | || || || Sbjct 12047 TAGGTTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTAC 12106 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || || Sbjct 12107 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAAATTTGGGA 12166 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 12167 CCAAAAACGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGC 12226 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| || ||| || | || ||| | | | Sbjct 12227 CCGGAA---TGTAT-TTGCC-----CCATCACCATCCTC-GA---------ATAAAGTAT 12267 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 |||| || || ||||||||||| || ||||| | || | || | || || ||||| Sbjct 12268 TTTCT--ACGGTAGCACCATGAATAGCGCATAGCAGAGCGGCGCCCAATACACCAGCAAC 12325 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| ||||| || |||| || || || || ||||| | || | ||| | Sbjct 12326 TCCCATCATATGAAAAGGGTTCAGCGTCCAATTATGAAACCCTTGAAAAAAGAGGATGAA 12385 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || ||||| ||||| || || || |||||||||| ||||||||||| Sbjct 12386 TCGAAAAATAGCTGCTACACCAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGG 12445 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || || || | | || || || || | |||||||| | ||| || || Sbjct 12446 ATAAATTAGGAATACAGAAACAAAAACAGCAATTGGGCCCGAGAATGCTATTGCATTATA 12505 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||| | | ||| || || | || ||||| | | ||| |||||||| ||||| Sbjct 12506 AGGGCGCAATTGAACAGATCGAGCAAGTTCGAATTGGCGTAACATAAAACCTATTAGTCC 12565 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 || | ||||| | || ||||| |||| || || || | ||| |||||||| || Sbjct 12566 GAAAGCACCATGAAGAGCAACAAAAGTCCACAGGCCGCCTAATTGACACCAACGAGTAAA 12625 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 |||||||||||||| ||||| || |||| | | || | | | | |||| Sbjct 12626 ATCGCCTTGTGCTTCAGGACCCCACAGCAACAACAAAGAGTGTGCTAAACTATTAGCAGG 12685 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || || ||||| |||||||| || || || | ||||||| || | ||||| Sbjct 12686 AGTAGAAACGGCTGCGGTTAAGAAATTGCAGCCTTCCAAATATGAACTGGCCAACCCATG 12745 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || || || || ||| |||||||| || | | | ||| || Sbjct 12746 AGTATACCATGAAGTTACAAACGTCGTACCTGTAAACCAACCCCCTACAGCGAAATAAGC 12805 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || ||||||||||| |||| || || ||||| ||||| |||||| Sbjct 12806 ACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAACGGTCTCTACGTAACCA 12865 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || |||||| Sbjct 12866 GTCATCCATAATATCAAA 12883 >seq15224 Length=172684 Score = 199 bits (220), Expect = 5e-46 Identities = 280/393 (71%), Gaps = 0/393 (0%) Strand=Plus/Minus Query 124253 GCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGA 124312 |||| ||||||||| | | | || |||||||| |||||| |||||||| | ||| Sbjct 89710 GCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGGAAGATCAATCGA 89651 Query 124313 CCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAA 124372 ||||| ||| | || || ||||| || || || |||||||| ||||| || || | ||| Sbjct 89650 CCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAA 89591 Query 124373 CCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAA 124432 || | || || || | ||||| ||||| || || | | ||| || || | ||| Sbjct 89590 CCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAAGTTACCAAGGAA 89531 Query 124433 CCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAA 124492 |||||||| || |||| || || ||||| | || ||||| || |||||| || Sbjct 89530 CCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCCAACATGTGAAAT 89471 Query 124493 GGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAG 124552 || ||||| || ||||| ||||| || ||||| || | ||| |||||||||||||| || Sbjct 89470 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 89411 Query 124553 ATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACA 124612 || || | |||||||||||||| || || ||||||| ||| || | ||||| || Sbjct 89410 ATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAAACG 89351 Query 124613 GCGAATGCAGCAGATACTGGTGCTGAATAAGCA 124645 || || || | || || |||||||| ||| Sbjct 89350 GCAGTAGCCGCTGCAACCGGAGCTGAATATGCA 89318 Score = 118 bits (130), Expect = 1e-21 Identities = 131/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 124740 ACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGT 124799 ||| |||||||||||||||||| ||||| |||||||||| |||||||||||| ||||| | Sbjct 89318 ACTCATAAGGACCACCATTATATAACCACTCATCAACAGATGCTGCTTCCCATATTGGAT 89259 Query 124800 AGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTAC 124859 | || || | || ||||| || | |||| || |||||||| || || ||||| | Sbjct 89258 AAAAATGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTC 89199 Query 124860 CATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGG 124914 | || | | ||| |||| || ||||| | || || || |||| ||| || || Sbjct 89198 CGTAAAGTAGAGATCCCGAAACAGGTTCACGAATCCCATCAATATTGACTGGCGG 89144 >seq8938 Length=12132 Score = 123 bits (136), Expect = 3e-23 Identities = 220/320 (69%), Gaps = 2/320 (1%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||| || || || ||||||| || || ||||| || || Sbjct 1719 TTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 1778 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || |||||| || | || |||||||| | ||||| || || || ||||| Sbjct 1779 ATCTTGAGCCACCATCCAAGCACGAATACCTTCATTTAAGAGAATATTTTTGGTGTAGAA 1838 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTC--TTATCTCTTGAGATACAAAGTCGTATGCT 123043 |||||| || || || ||||| ||||| | ||| ||||| || || ||||| || || Sbjct 1839 AGTCTCAAATTCAGGATCTTCGGCTGCACGTATATTTCTTGGGAAACGAAGTCATAGGCA 1898 Query 123044 CTGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGA 123103 | ||||| | || ||||| || | || | || |||| | | | | || || Sbjct 1899 CGTAGGTTCAAGGCCAGACCGACTACCCCAAGAGCACTCATCCATAAAACGGTTACTGGT 1958 Query 123104 ACGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGT 123163 || || ||||||| ||| ||||| | ||||| || ||||| || | ||||| | || Sbjct 1959 ACAAATAACATAAAGAAATGTAACCAACTTTTATTGGAAAAAGCAACCCCAAAAAGTTGG 2018 Query 123164 GACCAGAATCTGTTCGCTGT 123183 ||||| || | ||| || || Sbjct 2019 GACCAAAAACGGTTAGCGGT 2038 >seq14024 Length=49420 Score = 113 bits (124), Expect = 5e-20 Identities = 237/352 (67%), Gaps = 5/352 (1%) Strand=Plus/Minus Query 123557 AATTGTCTGAGCATGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCAT 123616 ||||| | | ||| | |||||| ||||| || | ||||| | || ||||| |||| Sbjct 34988 AATTGGCGTAACATAAGACCTATTAGTCCGAAAGCACCATGAAGAGCAACAAAAGTCCAC 34929 Query 123617 AGACCTCCGAGTTGTAACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAAC 123676 | || || | ||| ||||||| || |||||||||||||| ||||| | ||| Sbjct 34928 TGGCCGCCTAATTGACGCCAACGAGTAAAATCGCCTTGTGCTTCAGGACCCCACAACAAC 34869 Query 123677 ATGAGACTATGACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCT 123736 | | | || | | | | |||| || || | ||| |||||||| || Sbjct 34868 AACAAAGAGTGTGCTAAACTATTAGCAGGAGTAGAATCGATTGCGGTTAAGAAATTGCAG 34809 Query 123737 CCCTCAAGATATGAAGATGCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCC- 123795 || || | ||||||| || || ||||| ||||||||||| || || || || || || Sbjct 34808 CCTTCCAAATATGAACTGGCCATCCCATGAGTATACCATGAAGTTACAAACGTCGTACCT 34749 Query 123796 -TAA---GAACCAACCACCGATTGATAGATACGCACAAGGCAGAAGTAAAAGACCAGACC 123851 ||| |||||||| || | | | ||| |||||||| | || || ||||| ||| Sbjct 34748 GTAAATTAAACCAACCCCCTACAGCAAAATAAGCACAAGGAAAGAGCAATAGACCCGACT 34689 Query 123852 ATCCTATGAATACAAAACGATCTCTCTTTAACCAGTCGTCAAGAACATCAAA 123903 | |||| || || ||| ||||||| ||||||||| || | || |||||| Sbjct 34688 AACCTACAAAAACGAAATGATCTCTACGTAACCAGTCATCCATAATATCAAA 34637 >seq12877 Length=40778 Score = 107 bits (118), Expect = 2e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||| || || || ||||||| || || ||||| || || Sbjct 928 TTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 869 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || |||||||| | ||||| || || || ||||| Sbjct 868 ATCTTGAGCCGCCATCCAAGCACGAATACCTTCATTTAAGAGAATATTTTTGGTGTAGAA 809 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | ||| ||||| || || ||||| || || || Sbjct 808 AGTCTCAAATTCAGGATCTTCGGCTGCACGTATTTCTTGGGAAACGAAGTCATAGGCACT 749 Query 123046 GAGG 123049 ||| Sbjct 748 AAGG 745 >seq15982 Length=164312 Score = 89.7 bits (98), Expect = 6e-13 Identities = 215/319 (67%), Gaps = 11/319 (3%) Strand=Plus/Minus Query 123554 TCAAATTGTCTGAGCATGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTC 123613 || ||||| | | ||| |||||||| |||||||| | ||||| | | ||||| || Sbjct 20276 TCGAATTGGCGTAACATAAAACCTATTAGTCCAAAAGCACCATGAAGAGTAACAAAAGTC 20217 Query 123614 CATAGACCTCCGAGTTGTAACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGG 123673 || || || || | ||| |||||||| || |||||||||||| | ||| || Sbjct 20216 CACAGGCC-CCTAATTGACACCAACGAGTAAAACCGCCTTGTGCTTCAAGACCCACAAC- 20159 Query 123674 AACATGAGACTATGACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTT 123733 |||| ||| | || | || | | || | || || || ||||| |||||||| || Sbjct 20158 AACAA-AGAGTGTGCTAAACTG--TTAGCATGAGTAGAAACGGCTGCGGTTAAGAAATTG 20102 Query 123734 GCTCCCTCAAGATATGAAGATGCAATACCATGT----GTATACCATGATGTAACGAAGGT 123789 || || | ||||||| || | ||||| ||||||||||| || || || || Sbjct 20101 CAACCTTCCAAATATGAACGGGCCAACCCATGATTGAGTATACCATGAAGTTACAAACGT 20042 Query 123790 AGTTCCTAAGAACCAACCACCGATTGATAGATACGCACAAGGCAGAAGTAAAAGACCAGA 123849 || || | |||||||| || | | || | | |||||| | ||| || |||| ||| Sbjct 20041 CGTACCAATAAACCAACCCCCTACGG--CGAAATGAACAAGGAAAAAGCAATAGACTAGA 19984 Query 123850 CCATCCTATGAATACAAAA 123868 ||| |||| || | |||| Sbjct 19983 CCACCCTACAAAAAAAAAA 19965 >seq5553 Length=10595 Score = 89.7 bits (98), Expect = 6e-13 Identities = 215/319 (67%), Gaps = 11/319 (3%) Strand=Plus/Minus Query 123554 TCAAATTGTCTGAGCATGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTC 123613 || ||||| | | ||| |||||||| |||||||| | ||||| | | ||||| || Sbjct 5786 TCGAATTGGCGTAACATAAAACCTATTAGTCCAAAAGCACCATGAAGAGTAACAAAAGTC 5727 Query 123614 CATAGACCTCCGAGTTGTAACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGG 123673 || || || || | ||| |||||||| || |||||||||||| | ||| || Sbjct 5726 CACAGGCC-CCTAATTGACACCAACGAGTAAAACCGCCTTGTGCTTCAAGACCCACAAC- 5669 Query 123674 AACATGAGACTATGACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTT 123733 |||| ||| | || | || | | || | || || || ||||| |||||||| || Sbjct 5668 AACAA-AGAGTGTGCTAAACTG--TTAGCATGAGTAGAAACGGCTGCGGTTAAGAAATTG 5612 Query 123734 GCTCCCTCAAGATATGAAGATGCAATACCATGT----GTATACCATGATGTAACGAAGGT 123789 || || | ||||||| || | ||||| ||||||||||| || || || || Sbjct 5611 CAACCTTCCAAATATGAACGGGCCAACCCATGATTGAGTATACCATGAAGTTACAAACGT 5552 Query 123790 AGTTCCTAAGAACCAACCACCGATTGATAGATACGCACAAGGCAGAAGTAAAAGACCAGA 123849 || || | |||||||| || | | || | | |||||| | ||| || |||| ||| Sbjct 5551 CGTACCAATAAACCAACCCCCTACGG--CGAAATGAACAAGGAAAAAGCAATAGACTAGA 5494 Query 123850 CCATCCTATGAATACAAAA 123868 ||| |||| || | |||| Sbjct 5493 CCACCCTAAAAAAAAAAAA 5475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578672076501760