Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq13658 129 7e-25
seq13599 129 7e-25
seq16048 114 2e-20
seq15946 114 2e-20
seq11586 114 2e-20
seq16162 96.9 4e-15
seq13639 82.4 9e-11
>seq13658
Length=94377
Score = 129 bits (142), Expect = 7e-25
Identities = 250/368 (68%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
||||| || |||||||||||||| || ||||| || || ||| || ||| || |||
Sbjct 63143 CCAGGGACTGGAAAGACCCTCCTAGCGAAGGCCATTGCTGGAGAAGCAGGTGTTCCGTTC 63084
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| | |||| | | ||||| ||||||||||||||||||||||| | ||
Sbjct 63083 TTCTCGATTTCTGGTTCCGAATTTGTCGAGATGTTTGTTGGTGTGGGTGCTTCTCGAGTG 63024
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494
|| ||||| || ||| || |||||| || || |||||||| ||||||| |||
Sbjct 63023 CGTGATCTTTTCAAAAAGGCGAAAGAAAATGCTCCGTGCATTGTCTTTGTTGATGAAATT 62964
Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAA 175551
||||| || || | || | | |||| |||| || ||||||||||| |||
Sbjct 62963 GATGCTGTAGGGAGACAGAGGGGTACTGGAATTGGT---GGAGGGAATGACGAGAGGGAA 62907
Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611
|| || | ||||| || ||||| |||||||| || ||||| | || || || |
Sbjct 62906 CAGACGCTGAATCAGCTTCTCACTGAGATGGACGGTTTTGAGGGCAACACCGGTGTTATT 62847
Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671
|| | || || ||||| | | || || |||||| || || | | || ||||||
Sbjct 62846 GTAGTCGCTGCGACTAACAGAGCCGACATTCTTGATTCTGCTCTTTTGAGGCCTGGTCGT 62787
Query 175672 TTTGATCG 175679
||||| ||
Sbjct 62786 TTTGACCG 62779
>seq13599
Length=79719
Score = 129 bits (142), Expect = 7e-25
Identities = 250/368 (68%), Gaps = 6/368 (2%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
||||| || |||||||||||||| || ||||| || || ||| || ||| || |||
Sbjct 36924 CCAGGGACTGGAAAGACCCTCCTAGCGAAGGCCATTGCTGGAGAAGCAGGTGTTCCGTTC 36983
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| | |||| | | ||||| |||||||||||||||||||||||| | ||
Sbjct 36984 TTCTCGATTTCTGGTTCCGAATTTGTCGAGATGTTTGTTGGTGTGGGTGCCTCTCGAGTG 37043
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494
|| ||||| || ||| || |||||| || || |||||||| ||||||| |||
Sbjct 37044 CGTGATCTTTTCAAAAAGGCGAAAGAAAATGCTCCGTGCATTGTCTTTGTTGATGAAATT 37103
Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAA 175551
||||| || || | || | | |||| |||| || || |||||||| |||
Sbjct 37104 GATGCTGTAGGGAGACAGAGGGGTACTGGAATTGGT---GGAGGGAACGACGAGAGGGAA 37160
Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611
|| || | ||||| || ||||| |||||||| || ||||| | || || || |
Sbjct 37161 CAGACGCTGAATCAGCTTCTCACTGAGATGGACGGGTTTGAGGGCAACACCGGTGTTATT 37220
Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671
|| | || || ||||| | | || || |||||| || || | | || ||||||
Sbjct 37221 GTAGTCGCTGCGACTAACAGAGCCGACATTCTTGATTCTGCTCTTTTGAGGCCTGGTCGT 37280
Query 175672 TTTGATCG 175679
||||| ||
Sbjct 37281 TTTGACCG 37288
>seq16048
Length=246288
Score = 114 bits (126), Expect = 2e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
|| || ||| | || | || ||||||||||| ||||| || ||||| || ||| |||
Sbjct 204353 TTTGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTC 204412
Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190
||||| |||| |||| | || ||||| || || ||||| || || |||||||||||||
Sbjct 204413 TGCGCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAA 204472
Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228
|| ||||| || || |||||||| ||| || |||||
Sbjct 204473 CTCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGC 204510
>seq15946
Length=172941
Score = 114 bits (126), Expect = 2e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
|| || ||| | || | || ||||||||||| ||||| || ||||| || ||| |||
Sbjct 58418 TTTGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTC 58477
Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190
||||| |||| |||| | || ||||| || || ||||| || || |||||||||||||
Sbjct 58478 TGCGCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAA 58537
Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228
|| ||||| || || |||||||| ||| || |||||
Sbjct 58538 CTCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGC 58575
>seq11586
Length=26096
Score = 114 bits (126), Expect = 2e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
|| || ||| | || | || ||||||||||| ||||| || ||||| || ||| |||
Sbjct 4176 TTTGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTC 4235
Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190
||||| |||| |||| | || ||||| || || ||||| || || |||||||||||||
Sbjct 4236 TGCGCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAA 4295
Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228
|| ||||| || || |||||||| ||| || |||||
Sbjct 4296 CTCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGC 4333
>seq16162
Length=245457
Score = 96.9 bits (106), Expect = 4e-15
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT-TCAAC 75185
|| |||| ||| | || ||| |||||| |||||||||| |||| || | ||||| | |
Sbjct 40718 CGTGACTTTGACTATGATTATTTTGGTTTCAAAACCCTCGAGA-GATCGTATCTGTTGAA 40776
Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245
|| | | ||| | | |||| | || ||| | ||||| ||| | || ||| |||| |
Sbjct 40777 GGTTAG-TGGAAAGGTTGTGGAGAGGCCTCAGCATATGTTGATGAGAGTTGCAGTCGGTA 40835
Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATG 75304
|||| ||| || ||||| |||| | | |||||| | ||||| || |||| |
Sbjct 40836 TCCATAAGGACGATATTGAGTCTGCAATCAAAACATACCATTTCATGTCTCAGAGGTG-G 40894
Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
|||| ||| || | || ||||||||||||||||| ||||| ||||| ||
Sbjct 40895 TTCACTCATGCTTCCCCGACCCTCTTCAATGCTGGCACACCGAGACCTCA 40944
Score = 82.4 bits (90), Expect = 9e-11
Identities = 108/147 (73%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 75689 GATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGT 75748
|||||||||| | || ||| | || || || |||||| || ||||| | | | ||||
Sbjct 41596 GATCTCTTTTTTGCTCTTTGGGTGCCTGATCTGTTCATGGAGAGGGTTCAAAATGATGGT 41655
Query 75749 CAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGA 75807
|||||||| | || ||||| || |||| |||||||| | ||| || | |||| | ||
Sbjct 41656 CAATGGTCCTTGTTTTGTCCTAACGAGGCCCCAGGTCTTGCAGACTGCTG-GGGTAAAGA 41714
Query 75808 GTTTGAAGCCCTCTACACAAAGTATGA 75834
|||||||| || ||||| || || ||
Sbjct 41715 GTTTGAAGTGCTTTACACTAATTACGA 41741
>seq13639
Length=40771
Score = 82.4 bits (90), Expect = 9e-11
Identities = 211/317 (67%), Gaps = 6/317 (2%)
Strand=Plus/Minus
Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335
||||| ||||| || ||| ||| | | |||| |||||||| || ||||| ||
Sbjct 21871 GGTGCAAAGATTCCGAAAGGGTGCCTGTTAGTGGGTCCTCCAGGTACCGGTAAGACACTG 21812
Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395
|| || |||| | || || || | ||| || ||| || |||| | || | |
Sbjct 21811 CTGGCAAGAGCAGTGGCAGGAGAGGCTGGTGTGCCGTTCTTCTCGTGCGCAGCTTCTGAA 21752
Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455
||||| ||| |||| ||||| || || || | || || | || | ||||| | ||
Sbjct 21751 TTTGTAGAGTTGTTCGTTGGGGTTGGGGCGAGCAGAGTGAGGGACTTGTTTGAGAAAGCA 21692
Query 175456 C-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514
| | || || || || || || || ||||| || |||||||| || || | ||| |
Sbjct 21691 AAGAGTAAGGCA-CCGTGCATCGTGTTTATTGACGAAATTGATGCAGTCGGTAGACAAAG 21633
Query 175515 CAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572
| ||||| ||| || | || ||||||||||| || || |||||||| | |
Sbjct 21632 AGGAGCTGGAATGGGTGGCGGG--AACGACGAGAGAGAGCAGACCATTAATCAGTTGTTG 21575
Query 175573 ACCGAGATGGATGGCTT 175589
|| ||||||||||||||
Sbjct 21574 ACTGAGATGGATGGCTT 21558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596233373373440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |