Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq13658 129 7e-25 seq13599 129 7e-25 seq16048 114 2e-20 seq15946 114 2e-20 seq11586 114 2e-20 seq16162 96.9 4e-15 seq13639 82.4 9e-11 >seq13658 Length=94377 Score = 129 bits (142), Expect = 7e-25 Identities = 250/368 (68%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || |||||||||||||| || ||||| || || ||| || ||| || ||| Sbjct 63143 CCAGGGACTGGAAAGACCCTCCTAGCGAAGGCCATTGCTGGAGAAGCAGGTGTTCCGTTC 63084 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || | |||| | | ||||| ||||||||||||||||||||||| | || Sbjct 63083 TTCTCGATTTCTGGTTCCGAATTTGTCGAGATGTTTGTTGGTGTGGGTGCTTCTCGAGTG 63024 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| || ||| || |||||| || || |||||||| ||||||| ||| Sbjct 63023 CGTGATCTTTTCAAAAAGGCGAAAGAAAATGCTCCGTGCATTGTCTTTGTTGATGAAATT 62964 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAA 175551 ||||| || || | || | | |||| |||| || ||||||||||| ||| Sbjct 62963 GATGCTGTAGGGAGACAGAGGGGTACTGGAATTGGT---GGAGGGAATGACGAGAGGGAA 62907 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611 || || | ||||| || ||||| |||||||| || ||||| | || || || | Sbjct 62906 CAGACGCTGAATCAGCTTCTCACTGAGATGGACGGTTTTGAGGGCAACACCGGTGTTATT 62847 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671 || | || || ||||| | | || || |||||| || || | | || |||||| Sbjct 62846 GTAGTCGCTGCGACTAACAGAGCCGACATTCTTGATTCTGCTCTTTTGAGGCCTGGTCGT 62787 Query 175672 TTTGATCG 175679 ||||| || Sbjct 62786 TTTGACCG 62779 >seq13599 Length=79719 Score = 129 bits (142), Expect = 7e-25 Identities = 250/368 (68%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || |||||||||||||| || ||||| || || ||| || ||| || ||| Sbjct 36924 CCAGGGACTGGAAAGACCCTCCTAGCGAAGGCCATTGCTGGAGAAGCAGGTGTTCCGTTC 36983 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || | |||| | | ||||| |||||||||||||||||||||||| | || Sbjct 36984 TTCTCGATTTCTGGTTCCGAATTTGTCGAGATGTTTGTTGGTGTGGGTGCCTCTCGAGTG 37043 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| || ||| || |||||| || || |||||||| ||||||| ||| Sbjct 37044 CGTGATCTTTTCAAAAAGGCGAAAGAAAATGCTCCGTGCATTGTCTTTGTTGATGAAATT 37103 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAA 175551 ||||| || || | || | | |||| |||| || || |||||||| ||| Sbjct 37104 GATGCTGTAGGGAGACAGAGGGGTACTGGAATTGGT---GGAGGGAACGACGAGAGGGAA 37160 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611 || || | ||||| || ||||| |||||||| || ||||| | || || || | Sbjct 37161 CAGACGCTGAATCAGCTTCTCACTGAGATGGACGGGTTTGAGGGCAACACCGGTGTTATT 37220 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671 || | || || ||||| | | || || |||||| || || | | || |||||| Sbjct 37221 GTAGTCGCTGCGACTAACAGAGCCGACATTCTTGATTCTGCTCTTTTGAGGCCTGGTCGT 37280 Query 175672 TTTGATCG 175679 ||||| || Sbjct 37281 TTTGACCG 37288 >seq16048 Length=246288 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 || || ||| | || | || ||||||||||| ||||| || ||||| || ||| ||| Sbjct 204353 TTTGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTC 204412 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||||| |||| |||| | || ||||| || || ||||| || || ||||||||||||| Sbjct 204413 TGCGCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAA 204472 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || ||||| || || |||||||| ||| || ||||| Sbjct 204473 CTCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGC 204510 >seq15946 Length=172941 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 || || ||| | || | || ||||||||||| ||||| || ||||| || ||| ||| Sbjct 58418 TTTGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTC 58477 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||||| |||| |||| | || ||||| || || ||||| || || ||||||||||||| Sbjct 58478 TGCGCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAA 58537 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || ||||| || || |||||||| ||| || ||||| Sbjct 58538 CTCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGC 58575 >seq11586 Length=26096 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 || || ||| | || | || ||||||||||| ||||| || ||||| || ||| ||| Sbjct 4176 TTTGCTGAGAGGATTATCGCTTTTGCGTGTGTCGAGGGGATATTCTTTTCTGGGAGTTTC 4235 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||||| |||| |||| | || ||||| || || ||||| || || ||||||||||||| Sbjct 4236 TGCGCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTTAACCTTCTCAAATGAA 4295 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || ||||| || || |||||||| ||| || ||||| Sbjct 4296 CTCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGC 4333 >seq16162 Length=245457 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT-TCAAC 75185 || |||| ||| | || ||| |||||| |||||||||| |||| || | ||||| | | Sbjct 40718 CGTGACTTTGACTATGATTATTTTGGTTTCAAAACCCTCGAGA-GATCGTATCTGTTGAA 40776 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 || | | ||| | | |||| | || ||| | ||||| ||| | || ||| |||| | Sbjct 40777 GGTTAG-TGGAAAGGTTGTGGAGAGGCCTCAGCATATGTTGATGAGAGTTGCAGTCGGTA 40835 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATG 75304 |||| ||| || ||||| |||| | | |||||| | ||||| || |||| | Sbjct 40836 TCCATAAGGACGATATTGAGTCTGCAATCAAAACATACCATTTCATGTCTCAGAGGTG-G 40894 Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 |||| ||| || | || ||||||||||||||||| ||||| ||||| || Sbjct 40895 TTCACTCATGCTTCCCCGACCCTCTTCAATGCTGGCACACCGAGACCTCA 40944 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 75689 GATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGT 75748 |||||||||| | || ||| | || || || |||||| || ||||| | | | |||| Sbjct 41596 GATCTCTTTTTTGCTCTTTGGGTGCCTGATCTGTTCATGGAGAGGGTTCAAAATGATGGT 41655 Query 75749 CAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGA 75807 |||||||| | || ||||| || |||| |||||||| | ||| || | |||| | || Sbjct 41656 CAATGGTCCTTGTTTTGTCCTAACGAGGCCCCAGGTCTTGCAGACTGCTG-GGGTAAAGA 41714 Query 75808 GTTTGAAGCCCTCTACACAAAGTATGA 75834 |||||||| || ||||| || || || Sbjct 41715 GTTTGAAGTGCTTTACACTAATTACGA 41741 >seq13639 Length=40771 Score = 82.4 bits (90), Expect = 9e-11 Identities = 211/317 (67%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||| ||||| || ||| ||| | | |||| |||||||| || ||||| || Sbjct 21871 GGTGCAAAGATTCCGAAAGGGTGCCTGTTAGTGGGTCCTCCAGGTACCGGTAAGACACTG 21812 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || |||| | || || || | ||| || ||| || |||| | || | | Sbjct 21811 CTGGCAAGAGCAGTGGCAGGAGAGGCTGGTGTGCCGTTCTTCTCGTGCGCAGCTTCTGAA 21752 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||| |||| ||||| || || || | || || | || | ||||| | || Sbjct 21751 TTTGTAGAGTTGTTCGTTGGGGTTGGGGCGAGCAGAGTGAGGGACTTGTTTGAGAAAGCA 21692 Query 175456 C-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 | | || || || || || || || ||||| || |||||||| || || | ||| | Sbjct 21691 AAGAGTAAGGCA-CCGTGCATCGTGTTTATTGACGAAATTGATGCAGTCGGTAGACAAAG 21633 Query 175515 CAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | ||||| ||| || | || ||||||||||| || || |||||||| | | Sbjct 21632 AGGAGCTGGAATGGGTGGCGGG--AACGACGAGAGAGAGCAGACCATTAATCAGTTGTTG 21575 Query 175573 ACCGAGATGGATGGCTT 175589 || |||||||||||||| Sbjct 21574 ACTGAGATGGATGGCTT 21558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596233373373440