Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq15224 248 1e-60 >seq15224 Length=172684 Score = 248 bits (274), Expect = 1e-60 Identities = 276/366 (75%), Gaps = 2/366 (1%) Strand=Plus/Minus Query 8122 TTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAAT 8180 ||||| |||| | ||||| |||||||| |||| |||||| || |||||||||| || || Sbjct 89683 TTGTTGAAACTA-GCATATTGGAAGATCAATCGACCAAAATAAACATGAGCAGCTACGAT 89625 Query 8181 ATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGT 8240 |||||| || ||||| ||||||||||| | ||||| | || ||| || | ||| || Sbjct 89624 ATTATAAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 89565 Query 8241 TGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCC 8300 || || || || | | ||| || || || ||||| ||||||||||| || || || || Sbjct 89564 GGTTTCCCTAATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCC 89505 Query 8301 ACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGC 8360 ||||| | ||| ||||| || ||| || || || |||||||| ||||| ||||| || Sbjct 89504 GCCGAATACACCAGCTACACCCAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGC 89445 Query 8361 TTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAA 8420 |||||||| | ||||||||| || ||||||||||| |||| |||||| |||||||| || Sbjct 89444 CTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAAAGGCATACCATCAGAAAA 89385 Query 8421 TGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACT 8480 || ||||||| |||||| | ||||| || || ||| || | || ||||| Sbjct 89384 GCTTCCTTGACCAATTGGATAGATCAAGAAAACGGCAGTAGCCGCTGCAACCGGAGCTGA 89325 Query 8481 ATATGC 8486 |||||| Sbjct 89324 ATATGC 89319 Score = 109 bits (120), Expect = 7e-19 Identities = 133/180 (74%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 8582 ACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGAT 8641 ||| ||| ||||| || ||||| ||||||||||| | | || |||||||| || |||| Sbjct 89318 ACTCATAAGGACCACCATTATATAACCACTCATCAACAGATGCTGCTTCCCATATTGGAT 89259 Query 8642 AGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTC 8701 | || || || || ||||| |||| |||| | |||||||| || || ||||||| Sbjct 89258 AAAAATGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTC 89199 Query 8702 CATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAG 8761 | || | | || || | ||||||||||||||| || || |||| ||| || || |||| Sbjct 89198 CGTAAAGTAGAGATCCCGAAACAGGTTCACGAATCCCATCAATATTGACTGGCGG-GCAG 89140 Score = 109 bits (120), Expect = 7e-19 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 8041 GCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGG 8100 ||||| |||| |||||| | || ||| ||||||| || || || || | | ||| | | Sbjct 89915 GCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCGACTACCGGCCAAGCAGCTAAG 89856 Query 8101 AAGAAGTGAAGACTTCTACTGTTGTT-AAACGA-----TGCATACTGGAAGATTAATCTA 8154 |||||||| | | | | ||||| |||| | | ||| |||||||| |||| | Sbjct 89855 AAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGATATTGGAAGATCAATCGA 89796 Query 8155 CCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAA 8214 ||||| || ||||||||||| || |||||||| || ||||| ||||||||||| | ||| Sbjct 89795 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAA 89736 Query 8215 CC 8216 || Sbjct 89735 CC 89734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 8680 GCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCG 8739 |||||||| || || |||||||| || | | || || | ||||||||||||||| || Sbjct 89125 GCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCCGAAACAGGTTCACGAATCCCA 89066 Query 8740 TCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAAC 8799 || |||| ||| || ||||||||||| || || | ||||| || || |||| || Sbjct 89065 TCAATATTGACTGGCGGAGCAGCAATGAAGGCTATAATAAATACAGAAGTTGCAGTCAAT 89006 Query 8800 AAGCAAGGAATCATTAGAACTCCAAACCA 8828 || ||||||||| | ||| |||||||| Sbjct 89005 AATGTAGGAATCATCAAAACACCAAACCA 88977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615515299951360