Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq15224 233 5e-57 >seq15224 Length=172684 Score = 233 bits (258), Expect = 5e-57 Identities = 297/406 (73%), Gaps = 2/406 (0%) Strand=Plus/Plus Query 42675 TGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCA 42734 ||| || || || || || || || || ||||| || ||| | |||||||| |||| || Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377 Query 42735 AGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGT 42794 ||| ||||| ||||| |||||| | || ||||| ||||| |||||||||||| | || Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437 Query 42795 CTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGT 42854 ||||||||||| || ||||| |||||||| || || || ||| | ||||| || || || Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497 Query 42855 ATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCG 42914 ||| || || || | || |||||||||||| | || || ||| | | | | Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557 Query 42915 TGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGAC 42974 ||||| || ||||| ||| ||| | || |||| || ||||||||||| || || Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617 Query 42975 TTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTT 43034 |||||| || || || || |||| ||| ||||| || | |||||||||||||| | ||| Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGC-TAGTT 89676 Query 43035 T-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGT 43079 | || ||| || ||||| |||||||| | || |||||||| || Sbjct 89677 TCAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722 Score = 120 bits (132), Expect = 9e-23 Identities = 142/190 (75%), Gaps = 8/190 (4%) Strand=Plus/Plus Query 42940 AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGT 42999 ||| | || |||| || ||||||||||| || |||||||| || || || || |||||| Sbjct 89728 AATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGT 89787 Query 43000 TACTTTGGACGGCTTATCTTC------CAATATGCGTCGTTT-AATAATAGTCGCTCTTT 43052 || ||||| || | |||||| |||||||| | |||| || ||| ||| ||||| Sbjct 89788 TATTTTGGTCGATTGATCTTCCAATATCAATATGC-TAGTTTCAACAATTCTCGTTCTTT 89846 Query 43053 GCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAG 43112 |||||||| | || |||||||| || || || |||||||| ||| || | || | || Sbjct 89847 ACACTTCTTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAG 89906 Query 43113 TACTATGGCG 43122 ||||||||| Sbjct 89907 CACTATGGCG 89916 Score = 109 bits (120), Expect = 2e-19 Identities = 155/216 (72%), Gaps = 13/216 (6%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTAT--------GTTG 42331 |||| || || ||||||||| | ||| ||| | ||||| ||||| ||| Sbjct 88912 TGGGGTCGTTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATCGGATGGTTT 88971 Query 42332 GG---TGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATT 42387 || ||||||||||| |||||||||| | | |||| || | ||| |||||| Sbjct 88972 GGAGATGGTTTGGTGTTTTGATGATTCCTACATTATTGACTGCAACTTC-TGTATTTATT 89030 Query 42388 GTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGC 42447 | || ||||||||||| || || || | |||||||| |||||||||||||| || || Sbjct 89031 ATAGCCTTCATTGCTGCTCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGA 89090 Query 42448 TCTCTTCTGTATGGCAACAACATCATCTCTGGTGCC 42483 ||||| || || || ||||| || || ||||||||| Sbjct 89091 TCTCTACTTTACGGAAACAATATTATTTCTGGTGCC 89126 Score = 86.0 bits (94), Expect = 2e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 42405 CCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAA 42464 ||| || || | |||||||| |||||||||||||| || || ||||| || || || || Sbjct 89143 CCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAA 89202 Query 42465 CAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTC 42524 ||| || || ||||||||| | | |||| | || || || | ||||| ||| | Sbjct 89203 CAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCC 89262 Query 42525 GATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAG 42579 || |||||||| | |||| || ||| | || ||||| || |||||| || Sbjct 89263 AATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTATGAG 89317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143455949668224