Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_020867.1
Length=44892
Score E
Sequences producing significant alignments: (Bits) Value
seq15224 233 5e-57
>seq15224
Length=172684
Score = 233 bits (258), Expect = 5e-57
Identities = 297/406 (73%), Gaps = 2/406 (0%)
Strand=Plus/Plus
Query 42675 TGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCA 42734
||| || || || || || || || || ||||| || ||| | |||||||| |||| ||
Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377
Query 42735 AGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGT 42794
||| ||||| ||||| |||||| | || ||||| ||||| |||||||||||| | ||
Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437
Query 42795 CTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGT 42854
||||||||||| || ||||| |||||||| || || || ||| | ||||| || || ||
Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497
Query 42855 ATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCG 42914
||| || || || | || |||||||||||| | || || ||| | | | |
Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557
Query 42915 TGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGAC 42974
||||| || ||||| ||| ||| | || |||| || ||||||||||| || ||
Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617
Query 42975 TTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTT 43034
|||||| || || || || |||| ||| ||||| || | |||||||||||||| | |||
Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGC-TAGTT 89676
Query 43035 T-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGT 43079
| || ||| || ||||| |||||||| | || |||||||| ||
Sbjct 89677 TCAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722
Score = 120 bits (132), Expect = 9e-23
Identities = 142/190 (75%), Gaps = 8/190 (4%)
Strand=Plus/Plus
Query 42940 AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGT 42999
||| | || |||| || ||||||||||| || |||||||| || || || || ||||||
Sbjct 89728 AATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGT 89787
Query 43000 TACTTTGGACGGCTTATCTTC------CAATATGCGTCGTTT-AATAATAGTCGCTCTTT 43052
|| ||||| || | |||||| |||||||| | |||| || ||| ||| |||||
Sbjct 89788 TATTTTGGTCGATTGATCTTCCAATATCAATATGC-TAGTTTCAACAATTCTCGTTCTTT 89846
Query 43053 GCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAG 43112
|||||||| | || |||||||| || || || |||||||| ||| || | || | ||
Sbjct 89847 ACACTTCTTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAG 89906
Query 43113 TACTATGGCG 43122
|||||||||
Sbjct 89907 CACTATGGCG 89916
Score = 109 bits (120), Expect = 2e-19
Identities = 155/216 (72%), Gaps = 13/216 (6%)
Strand=Plus/Plus
Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTAT--------GTTG 42331
|||| || || ||||||||| | ||| ||| | ||||| ||||| |||
Sbjct 88912 TGGGGTCGTTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATCGGATGGTTT 88971
Query 42332 GG---TGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATT 42387
|| ||||||||||| |||||||||| | | |||| || | ||| ||||||
Sbjct 88972 GGAGATGGTTTGGTGTTTTGATGATTCCTACATTATTGACTGCAACTTC-TGTATTTATT 89030
Query 42388 GTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGC 42447
| || ||||||||||| || || || | |||||||| |||||||||||||| || ||
Sbjct 89031 ATAGCCTTCATTGCTGCTCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGA 89090
Query 42448 TCTCTTCTGTATGGCAACAACATCATCTCTGGTGCC 42483
||||| || || || ||||| || || |||||||||
Sbjct 89091 TCTCTACTTTACGGAAACAATATTATTTCTGGTGCC 89126
Score = 86.0 bits (94), Expect = 2e-12
Identities = 124/175 (71%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 42405 CCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAA 42464
||| || || | |||||||| |||||||||||||| || || ||||| || || || ||
Sbjct 89143 CCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAA 89202
Query 42465 CAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTC 42524
||| || || ||||||||| | | |||| | || || || | ||||| ||| |
Sbjct 89203 CAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCC 89262
Query 42525 GATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAG 42579
|| |||||||| | |||| || ||| | || ||||| || |||||| ||
Sbjct 89263 AATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTATGAG 89317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143455949668224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |