Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq15224 203 1e-47 >seq15224 Length=172684 Score = 203 bits (224), Expect = 1e-47 Identities = 288/405 (71%), Gaps = 0/405 (0%) Strand=Plus/Minus Query 26069 ACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGA 26128 |||||||||| ||| | ||||| || | ||||||| || || ||||| ||||| || Sbjct 89722 ACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGG 89663 Query 26129 AAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGC 26188 || || |||| ||||| || | || ||||| || |||||||| || ||||| ||||| Sbjct 89662 AAGATCAATCGACCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 89603 Query 26189 CCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAA 26248 ||||| | || || | ||| || | | ||||| ||||| ||| | ||| Sbjct 89602 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 89543 Query 26249 GTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCA 26308 || ||||| || ||||||||| || || | || ||||| || ||||| ||||| Sbjct 89542 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCC 89483 Query 26309 GCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTA 26368 ||| || ||||||||||| || || || || || || |||||||| | ||| ||||| Sbjct 89482 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 89423 Query 26369 AAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAA 26428 ||||||||||| || || | |||||| |||||| ||| || ||||| || | ||||| Sbjct 89422 AAAGTACCAGAAATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAG 89363 Query 26429 ACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473 | ||||| || || ||| || | | || |||| ||||||| Sbjct 89362 ATCAAGAAAACGGCAGTAGCCGCTGCAACCGGAGCTGAATATGCA 89318 Score = 84.2 bits (92), Expect = 6e-12 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 26572 ATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAA 26631 ||| || || ||||| |||| |||||| || | | | |||||||| || || ||||| Sbjct 89314 ATAAGGACCACCATTATATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAA 89255 Query 26632 ATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTA 26691 ||| | || || || ||| | || | | || || || || |||||||||||||| Sbjct 89254 ATGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTA 89195 Query 26692 CATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGG 26742 | || || || ||||| || ||||| || ||||| |||| || ||||| Sbjct 89194 AAGTAGAGATCCCGAAACAGGTTCACGAATCCCATCAATATTGACTGGCGG 89144 Score = 82.4 bits (90), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 13/206 (6%) Strand=Plus/Minus Query 26666 GCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCA 26725 || || || || |||||||||||||| | || || || ||||| || ||||| || ||| Sbjct 89125 GCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCCGAAACAGGTTCACGAATCCCA 89066 Query 26726 TCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAG 26784 || |||| || ||||| || || |||||||| | ||||| ||| | ||| || | | Sbjct 89065 TCAATATTGACTGGCGGAGCAGCAATGAAGGCTATAATAAATACA-GAAGTTGCAGTCAA 89007 Query 26785 TAAGCAGGGTATCAT--AAGCACC---------CCGAACCATCCCACATAGAGACGGTTC 26833 ||| || ||||| || |||| || |||||||| | || || ||||| Sbjct 89006 TAATGTAGGAATCATCAAAACACCAAACCATCTCCAAACCATCCGATGTAAAGGCGGTTT 88947 Query 26834 TCAGTACTTGTAACCCACTCACAAAA 26859 ||||| || || | ||| | ||| || Sbjct 88946 TCAGTGCTAGTTATCCAGTTACAGAA 88921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147632912040960