Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_020875.1
Length=182801
Score E
Sequences producing significant alignments: (Bits) Value
seq15224 226 3e-54
>seq15224
Length=172684
Score = 226 bits (250), Expect = 3e-54
Identities = 293/405 (72%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 155355 TGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCA 155414
|||||| || || || || | || || || || ||| | | ||||| | |||||
Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377
Query 155415 AGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGT 155474
||| || ||||||| |||||| | || || ||||||||||| |||| ||| | ||
Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437
Query 155475 GTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGT 155534
||||| || || ||||| |||||||||||||| || |||||| | || ||||| |||||
Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497
Query 155535 GTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCG 155594
||||| || || || || ||||||||| ||||| ||||| || ||| | || |
Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557
Query 155595 TGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC 155654
||||| || || | || ||| || | ||||||| || || ||||| ||||||||
Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617
Query 155655 TTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTT 155714
|||||| || || |||||||||| || || ||||| | |||||||| ||||| ||
Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677
Query 155715 CAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGT 155759
|||||| || | | | ||||||||| | ||||| ||||| ||
Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722
Score = 122 bits (134), Expect = 1e-22
Identities = 121/157 (77%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 155098 ATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 155157
|||||||| ||||||||||| || | || ||| || | || || ||||| || || |||
Sbjct 89156 ATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAACAATATTATTTCT 89215
Query 155158 GGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCA 155217
||||| || | |||| ||| || || || | || || ||||| || |||||||||
Sbjct 89216 GGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCAATATGGGAAGCA 89275
Query 155218 GCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTT 155254
||| || ||||||||||||| || |||||||||||||
Sbjct 89276 GCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTT 89312
Score = 96.9 bits (106), Expect = 4e-15
Identities = 122/168 (73%), Gaps = 6/168 (4%)
Strand=Plus/Plus
Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTC 155685
||||||| || || ||||| |||||||||||||| || || ||||||||||| || ||
Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793
Query 155686 GGTCGTCTTATCTTC------CAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTC 155739
||||| | |||||| || ||||| |||||||| || | | | ||||||
Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853
Query 155740 TTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGT 155787
||| | ||||| ||||| || ||| | || ||| |||||| | |||
Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGT 89901
Score = 84.2 bits (92), Expect = 3e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 155014 TGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCC 155073
||||| |||||| | ||||| ||| | | |||| || | || ||| | |||
Sbjct 88977 TGGTTTGGTGTTTTGATGATTCCTACATTATTGACTGCAACTTCTGTATTTATTATAGCC 89036
Query 155074 TTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTA 155133
||||||||||| || || || | |||||||| ||||||||||| || | || ||| ||
Sbjct 89037 TTCATTGCTGCTCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTA 89096
Query 155134 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTC 155177
| || || ||||| || || |||||||| || | |||| |||
Sbjct 89097 CTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTC 89140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 584505586881280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |