Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq15224 233 5e-57 >seq15224 Length=172684 Score = 233 bits (258), Expect = 5e-57 Identities = 294/404 (73%), Gaps = 0/404 (0%) Strand=Plus/Minus Query 40725 ACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGA 40784 ||||| ||||| | | |||||||||| | |||| ||||||||| ||||||||| Sbjct 89722 ACCGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGG 89663 Query 40785 AATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGA 40844 || || | || |||||| ||| | || ||||||||||| |||||||| || | || ||| Sbjct 89662 AAGATCAATCGACCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 89603 Query 40845 CCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAA 40904 ||||| | || || | || |||||| |||| ||||| |||| ||| | ||| Sbjct 89602 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 89543 Query 40905 GTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCG 40964 || || | | || ||||||||| ||| | | || || || || || || || || Sbjct 89542 GTTACCAAGGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCC 89483 Query 40965 AGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTG 41024 | ||| || ||||||||||| || |||||||| || || ||||| |||| |||||||||| Sbjct 89482 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTG 89423 Query 41025 AATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAA 41084 || || ||| ||||||||||||||||||||||| || || ||||| | |||||| Sbjct 89422 AAAGTACCAGAAATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAG 89363 Query 41085 ACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGC 41128 | ||||| || || ||| |||| | ||||||| ||||| Sbjct 89362 ATCAAGAAAACGGCAGTAGCCGCTGCAACCGGAGCTGAATATGC 89319 Score = 118 bits (130), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 13/206 (6%) Strand=Plus/Minus Query 41322 GCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCA 41381 || ||||| ||||||||||| ||||| | || || || ||||| || ||||| || ||| Sbjct 89125 GCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCCGAAACAGGTTCACGAATCCCA 89066 Query 41382 TCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAG 41440 || |||| || ||||| || || || ||||| || || || ||| | || ||||| | Sbjct 89065 TCAATATTGACTGGCGGAGCAGCAATGAAGGCTATAATAAATACA-GAAGTTGCAGTCAA 89007 Query 41441 TAATGCTGGAATCATTAGCACACCAA-----------ACCAACCTACGTATAGGCGGTTG 41489 ||||| |||||||| | ||||||| |||| || | ||| |||||||| Sbjct 89006 TAATGTAGGAATCATCAAAACACCAAACCATCTCCAAACCATCCGATGTAAAGGCGGTTT 88947 Query 41490 TCGGTGCTAGTGACCCAGTTACAAAA 41515 || |||||||| | ||||||||| || Sbjct 88946 TCAGTGCTAGTTATCCAGTTACAGAA 88921 Score = 93.3 bits (102), Expect = 1e-14 Identities = 124/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 40683 GCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGA 40742 |||||||| ||||| | | |||| ||| || || | ||||| ||||| | | Sbjct 89915 GCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCGACTACCGGCCAAGCAGCTAAG 89856 Query 40743 AAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAAT------ATTAGTCTA 40796 |||||||||| | ||| ||||||||| |||||||||| || || | || | Sbjct 89855 AAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGATATTGGAAGATCAATCGA 89796 Query 40797 CCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAA 40849 ||||| ||||| || ||||||||||| |||||||| || | || |||||||| Sbjct 89795 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCAAA 89743 Score = 87.8 bits (96), Expect = 5e-13 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 41228 ATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAA 41287 ||| || || || || |||| |||||| || | | | |||||||| ||||| || || Sbjct 89314 ATAAGGACCACCATTATATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAA 89255 Query 41288 ATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTA 41347 ||| | || || || ||| | |||| | || ||||| ||||||||||| ||||| Sbjct 89254 ATGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTA 89195 Query 41348 CATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGG 41398 | || || || ||||| || ||||| || ||||| |||| || ||||| Sbjct 89194 AAGTAGAGATCCCGAAACAGGTTCACGAATCCCATCAATATTGACTGGCGG 89144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143625458860992