Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq15224 271 9e-68 >seq15224 Length=172684 Score = 271 bits (300), Expect = 9e-68 Identities = 297/395 (75%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 67563 GCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAG 67622 ||||| | ||||||||| | | | || ||||||||| ||||| ||||||||||| Sbjct 89713 GCAGCTAAGAAGAAGTGTAAAGAACGGGAATTGTTGAAACTAGCATATTGGAAGATCAAT 89654 Query 67623 CGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTG 67682 ||||| || || |||||||||| || || || ||||| ||||| ||||| || || || Sbjct 89653 CGACCAAAATAAACATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCAAATCTG 89594 Query 67683 TAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGA 67742 ||||| | || || || | || || ||||| || || | | |||||| || | Sbjct 89593 TAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAAGTTACCAAG 89534 Query 67743 GAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGG 67802 ||||| |||||||||||||| || || || ||||||||||| ||||| || | ||| || Sbjct 89533 GAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCCAACATGTGA 89474 Query 67803 AATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCA 67862 |||||||||||||||||||||||||| || ||||| || | |||| |||| ||||||||| Sbjct 89473 AATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA 89414 Query 67863 GAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAAC 67922 ||||| || | |||||| | ||||| || |||||||| | ||||||| |||||| Sbjct 89413 GAAATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAA 89354 Query 67923 ACAGCGAATGCTGCAGACACTGGAGCAGAGTATGC 67957 || || || || | || ||||| || ||||| Sbjct 89353 ACGGCAGTAGCCGCTGCAACCGGAGCTGAATATGC 89319 Score = 125 bits (138), Expect = 8e-24 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 68059 AAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGT 68118 |||| ||||||||||| ||||||||||| | || |||||||||||| || ||||| || | Sbjct 89312 AAGGACCACCATTATATAACCACTCATCAACAGATGCTGCTTCCCATATTGGATAAAAAT 89253 Query 68119 GAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACA 68178 | | || || || ||| |||||| || ||||||||||| || ||||| ||||| | Sbjct 89252 GCAACCCTATAGCTGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAA 89193 Query 68179 TGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGG 68227 || || || | ||||||||| | || ||||| |||| ||||| || Sbjct 89192 GTAGAGATCCCGAAACAGGTTCACGAATCCCATCAATATTGACTGGCGG 89144 Score = 100 bits (110), Expect = 3e-16 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 67512 GCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGG 67571 |||||||| | ||| | ||||| ||||| || | ||| || || | ||||| | | Sbjct 89915 GCCATAGTGCTAATACCTAAAGCAGTAAACCAAATACCGACTACCGGCCAAGCAGCTAAG 89856 Query 67572 AAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTG------GAAGATCAAGCGA 67625 |||||||| | | | || ||||||||| ||||| || ||||||||| ||| Sbjct 89855 AAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGATATTGGAAGATCAATCGA 89796 Query 67626 CCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAA 67685 || || || ||||||||||| || || || ||||| ||||| ||||| || || ||||| Sbjct 89795 CCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAA 89736 Query 67686 CC 67687 || Sbjct 89735 CC 89734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 68136 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACA 68195 ||| |||||| || ||||||||||| || ||||| ||||| | || || || | |||| Sbjct 89140 GAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCCGAAACA 89081 Query 68196 GGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAA 68255 ||||| | || ||||| |||| ||||| || || |||||||| || || || || | Sbjct 89080 GGTTCACGAATCCCATCAATATTGACTGGCGGAGCAGCAATGAAGGCTATAATAAATACA 89021 Query 68256 GTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCA 68299 | | ||| | | || |||||||||||| ||||| ||||| Sbjct 89020 GAAGTTGCAGTCAATAATGTAGGAATCATCAAAACACCAAACCA 88977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566627668558080