Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq37662 120 5e-22 seq13717 107 3e-18 seq13853 102 1e-16 seq15816 100 5e-16 seq13404 100 5e-16 seq16149 98.7 2e-15 seq14668 96.9 6e-15 seq4575 96.9 6e-15 >seq37662 Length=1545 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||||| ||| | |||| || | |||| |||||| || || Sbjct 19 ATTTGCATACCACCTCTCAGTCGCAACACCAAGTGGAGCGTAGACTCTTTCTGGATGTTG 78 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | | ||| | | || || | |||||||| || ||||| || ||||| ||| Sbjct 79 TAATCAGCAAGCGTACGACCGTCCTCAAGCTGTTTTCCCGCGAAAATCAACCTCTGCTGA 138 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || || || |||||||| | |||| || | || ||| || || ||| Sbjct 139 TCAGGAGGGATCCCCTCCTTATCTTGAACCTTGGACTTAACGTTGTCAATGGTGTCCGAA 198 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| | || || || || ||||| |||||||| ||||| |||||||| Sbjct 199 CTTTCAACTTCCAAGGTGATCGTCTTCCCTGTCAGCGTTTTCACAAAGATTTGCAT 254 >seq13717 Length=68558 Score = 107 bits (118), Expect = 3e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||||||||| ||||| | | ||||| || || || || ||||| || ||||| || Sbjct 35089 TGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATC 35148 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||||||| | ||| || || || || || ||||| ||||| ||||| || || ||| Sbjct 35149 TTGGTTTTCACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATCGTCTTCCCT 35208 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 ||||| ||||| || || || |||||||| || Sbjct 35209 GTTAGGGTTTTCACGAAGATCTGCATTTTTTT 35240 >seq13853 Length=43806 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||||| || | ||| || ||| ||||| || | || || | | ||| || Sbjct 19314 ACCAAGTGCAAAGTCGACTCCTTCTGAATGTTATAATCAGCCAAAGTACGACCATCCTCA 19255 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || ||||||||||| | ||||| ||||| || || || || || ||||| || Sbjct 19254 AGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGA 19195 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 |||||||| || | ||| || || ||||| |||||| || || || || || || Sbjct 19194 ATTTTGGTCTTAACATTGTCGATGGTGTCGGAGCTCTCAACCTCAAGGGTAATCGTCTTT 19135 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || ||||| Sbjct 19134 CCAGTCAGCGTTTTCACGAAGATCTGCAT 19106 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | |||||||| | || | || || ||| || |||||| Sbjct 19563 ATACCACCACGAAGACGCAACACCAGATGGAGGGTCGATTCCTTTTGAATGTTGTAGTCG 19504 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | ||||| | | || || | || ||||| ||||| || ||||||||||| || || Sbjct 19503 GCCAACGTACGACCGTCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGG 19444 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || ||||| || || | || ||| || || || ||| Sbjct 19443 GGGATACCCTCCTTGTCCTGAATTTTTGTCTTGACGTTGTCAATGGTGTCCGAGCTCTCC 19384 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| || || || ||||| | || || || || |||||||| Sbjct 19383 ACCTCTAGAGTGATCGTCTTTCCTGTCAAAGTCTTCACGAAGATTTGCAT 19334 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || ||||| || | | || || || || || |||||||| || ||||| ||| Sbjct 18795 TGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGGATT 18736 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || ||||| | ||| || || || || || ||||||||||| || || || || Sbjct 18735 TTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACTTCTAGAGTGATTGTCTTGCCG 18676 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || |||||||| Sbjct 18675 GTTAGGGTTTTCACGAAGATTTGCAT 18650 >seq15816 Length=132008 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||||||||| | ||||| | || || | |||||| || ||||| || | || Sbjct 112613 AATATTATAGTCTGCCAACGTGCGCCCGTCCTCGAGTTGTTTACCCGCAAAGATCAGCCT 112672 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || || || || || || ||||| ||||| || |||||||| || | ||| |||||| Sbjct 112673 TTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATAGT 112732 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 |||||| |||||| || || || || || || || || | || ||||| || ||||| Sbjct 112733 GTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTG 112792 Query 193358 CAT 193360 ||| Sbjct 112793 CAT 112795 >seq13404 Length=35904 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||||||||| | ||||| | ||| || | |||||| || ||||| || | || Sbjct 6072 AATATTATAGTCTGCCAACGTGCGCCCATCCTCGAGTTGTTTACCCGCAAAGATCAGCCT 6013 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || || || || || || ||||| ||||| || |||||||| || | ||| ||| || Sbjct 6012 TTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATCGT 5953 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 |||||| |||||| || || || || || || || || | || ||||| || ||||| Sbjct 5952 GTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTG 5893 Query 193358 CAT 193360 ||| Sbjct 5892 CAT 5890 >seq16149 Length=224952 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||||||||| || || | | ||||| || ||||| || ||||| || ||||| ||| Sbjct 103608 TGTTTTCCGGCGAAGATGAGACGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGAATT 103549 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 ||||| || | ||| || || ||||| || ||||| || | ||||| || || || Sbjct 103548 TTGGTCTTCACATTGTCGATGGTGTCGGAGGATTCAACCTCCAATGTTATCGTCTTCCCC 103489 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || ||||| ||||| || Sbjct 103488 GTTAGGGTTTTCACGAATATCTGCATCTT 103460 >seq14668 Length=62046 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||||||||| | ||||| | || || | |||||| || ||||| || | || Sbjct 42283 AATATTATAGTCTGCCAACGTGCGCCCGTCCTCGAGTTGTTTACCAGCAAAGATCAGCCT 42224 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || || || || || || ||||| ||||| || |||||||| || | ||| ||| || Sbjct 42223 TTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATTGT 42164 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 |||||| |||||| || || || || || || || || | || ||||| || ||||| Sbjct 42163 GTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTG 42104 Query 193358 CAT 193360 ||| Sbjct 42103 CAT 42101 >seq4575 Length=13488 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||||||||| | ||||| | || || | |||||| || ||||| || | || Sbjct 343 AATATTATAGTCTGCCAACGTGCGCCCGTCCTCGAGTTGTTTACCAGCAAAGATCAGCCT 284 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || || || || || || ||||| ||||| || |||||||| || | ||| ||| || Sbjct 283 TTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATCGT 224 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 |||||| |||||| || || || || || || || || | || ||||| || ||||| Sbjct 223 GTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTG 164 Query 193358 CAT 193360 ||| Sbjct 163 CAT 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899147354780160