Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq37662 120 5e-22
seq13717 107 3e-18
seq13853 102 1e-16
seq15816 100 5e-16
seq13404 100 5e-16
seq16149 98.7 2e-15
seq14668 96.9 6e-15
seq4575 96.9 6e-15
>seq37662
Length=1545
Score = 120 bits (132), Expect = 5e-22
Identities = 168/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| ||||||||||||| ||| | |||| || | |||| |||||| || ||
Sbjct 19 ATTTGCATACCACCTCTCAGTCGCAACACCAAGTGGAGCGTAGACTCTTTCTGGATGTTG 78
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| || | | ||| | | || || | |||||||| || ||||| || ||||| |||
Sbjct 79 TAATCAGCAAGCGTACGACCGTCCTCAAGCTGTTTTCCCGCGAAAATCAACCTCTGCTGA 138
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|||||||| || || || |||||||| | |||| || | || ||| || || |||
Sbjct 139 TCAGGAGGGATCCCCTCCTTATCTTGAACCTTGGACTTAACGTTGTCAATGGTGTCCGAA 198
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| | || || || || ||||| |||||||| ||||| ||||||||
Sbjct 199 CTTTCAACTTCCAAGGTGATCGTCTTCCCTGTCAGCGTTTTCACAAAGATTTGCAT 254
>seq13717
Length=68558
Score = 107 bits (118), Expect = 3e-18
Identities = 115/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||||||||| ||||| | | ||||| || || || || ||||| || ||||| ||
Sbjct 35089 TGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATC 35148
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||||||| | ||| || || || || || ||||| ||||| ||||| || || |||
Sbjct 35149 TTGGTTTTCACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATCGTCTTCCCT 35208
Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTTATT 193366
||||| ||||| || || || |||||||| ||
Sbjct 35209 GTTAGGGTTTTCACGAAGATCTGCATTTTTTT 35240
>seq13853
Length=43806
Score = 102 bits (112), Expect = 1e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|||| ||||| || | ||| || ||| ||||| || | || || | | ||| ||
Sbjct 19314 ACCAAGTGCAAAGTCGACTCCTTCTGAATGTTATAATCAGCCAAAGTACGACCATCCTCA 19255
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
| ||| || ||||||||||| | ||||| ||||| || || || || || ||||| ||
Sbjct 19254 AGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGA 19195
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|||||||| || | ||| || || ||||| |||||| || || || || || ||
Sbjct 19194 ATTTTGGTCTTAACATTGTCGATGGTGTCGGAGCTCTCAACCTCAAGGGTAATCGTCTTT 19135
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || |||||||| || || || |||||
Sbjct 19134 CCAGTCAGCGTTTTCACGAAGATCTGCAT 19106
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | | || | |||||||| | || | || || ||| || ||||||
Sbjct 19563 ATACCACCACGAAGACGCAACACCAGATGGAGGGTCGATTCCTTTTGAATGTTGTAGTCG 19504
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| ||||| | | || || | || ||||| ||||| || ||||||||||| || ||
Sbjct 19503 GCCAACGTACGACCGTCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGG 19444
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || || || || ||||| || || | || ||| || || || |||
Sbjct 19443 GGGATACCCTCCTTGTCCTGAATTTTTGTCTTGACGTTGTCAATGGTGTCCGAGCTCTCC 19384
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| |||||||| || || || ||||| | || || || || ||||||||
Sbjct 19383 ACCTCTAGAGTGATCGTCTTTCCTGTCAAAGTCTTCACGAAGATTTGCAT 19334
Score = 84.2 bits (92), Expect = 4e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||| || ||||| || | | || || || || || |||||||| || ||||| |||
Sbjct 18795 TGTTTACCAGCAAAGATCAGACGTTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGGATT 18736
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| ||||| | ||| || || || || || ||||||||||| || || || ||
Sbjct 18735 TTTGTTTTGACATTGTCGATCGTGTCAGAGCTTTCGACTTCTAGAGTGATTGTCTTGCCG 18676
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||| || || ||||||||
Sbjct 18675 GTTAGGGTTTTCACGAAGATTTGCAT 18650
>seq15816
Length=132008
Score = 100 bits (110), Expect = 5e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
|||||||||||| | ||||| | || || | |||||| || ||||| || | ||
Sbjct 112613 AATATTATAGTCTGCCAACGTGCGCCCGTCCTCGAGTTGTTTACCCGCAAAGATCAGCCT 112672
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
|| || || || || || ||||| ||||| || |||||||| || | ||| ||||||
Sbjct 112673 TTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATAGT 112732
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
|||||| |||||| || || || || || || || || | || ||||| || |||||
Sbjct 112733 GTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTG 112792
Query 193358 CAT 193360
|||
Sbjct 112793 CAT 112795
>seq13404
Length=35904
Score = 100 bits (110), Expect = 5e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
|||||||||||| | ||||| | ||| || | |||||| || ||||| || | ||
Sbjct 6072 AATATTATAGTCTGCCAACGTGCGCCCATCCTCGAGTTGTTTACCCGCAAAGATCAGCCT 6013
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
|| || || || || || ||||| ||||| || |||||||| || | ||| ||| ||
Sbjct 6012 TTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATCGT 5953
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
|||||| |||||| || || || || || || || || | || ||||| || |||||
Sbjct 5952 GTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTG 5893
Query 193358 CAT 193360
|||
Sbjct 5892 CAT 5890
>seq16149
Length=224952
Score = 98.7 bits (108), Expect = 2e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||||||||| || || | | ||||| || ||||| || ||||| || ||||| |||
Sbjct 103608 TGTTTTCCGGCGAAGATGAGACGTTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGAATT 103549
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
||||| || | ||| || || ||||| || ||||| || | ||||| || || ||
Sbjct 103548 TTGGTCTTCACATTGTCGATGGTGTCGGAGGATTCAACCTCCAATGTTATCGTCTTCCCC 103489
Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| ||||| || ||||| ||||| ||
Sbjct 103488 GTTAGGGTTTTCACGAATATCTGCATCTT 103460
>seq14668
Length=62046
Score = 96.9 bits (106), Expect = 6e-15
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
|||||||||||| | ||||| | || || | |||||| || ||||| || | ||
Sbjct 42283 AATATTATAGTCTGCCAACGTGCGCCCGTCCTCGAGTTGTTTACCAGCAAAGATCAGCCT 42224
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
|| || || || || || ||||| ||||| || |||||||| || | ||| ||| ||
Sbjct 42223 TTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATTGT 42164
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
|||||| |||||| || || || || || || || || | || ||||| || |||||
Sbjct 42163 GTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTG 42104
Query 193358 CAT 193360
|||
Sbjct 42103 CAT 42101
>seq4575
Length=13488
Score = 96.9 bits (106), Expect = 6e-15
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
|||||||||||| | ||||| | || || | |||||| || ||||| || | ||
Sbjct 343 AATATTATAGTCTGCCAACGTGCGCCCGTCCTCGAGTTGTTTACCAGCAAAGATCAGCCT 284
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
|| || || || || || ||||| ||||| || |||||||| || | ||| ||| ||
Sbjct 283 TTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATCGT 224
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
|||||| |||||| || || || || || || || || | || ||||| || |||||
Sbjct 223 GTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTG 164
Query 193358 CAT 193360
|||
Sbjct 163 CAT 161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899147354780160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |