Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq15946 98.7 1e-15
seq14446 98.7 1e-15
seq11586 98.7 1e-15
seq16048 95.1 2e-14
seq16084 93.3 6e-14
seq13853 91.5 2e-13
>seq15946
Length=172941
Score = 98.7 bits (108), Expect = 1e-15
Identities = 363/562 (65%), Gaps = 12/562 (2%)
Strand=Plus/Minus
Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208
|| || | ||| ||||| || ||| | ||| || || | || || | ||| ||
Sbjct 58587 TACAAAAGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAG 58528
Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268
|| |||||||| ||||| | || | ||||| |||||||| |||| |||||| | |
Sbjct 58527 AAGGTTAACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCA 58468
Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328
||||||||||| ||||| || ||||| || || || | || |||||||| | | |
Sbjct 58467 GAAAAGAATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCT-CAGA 58409
Query 18329 TTGCTCAGTATCCATTTTTGTGCCC-ATTCTCCTTNNNNNNNNATACACGGTATACTCTC 18387
||| ||||| |||| || | |||| || || || ||||
Sbjct 58408 ACCATCA--ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTC 58352
Query 18388 TATAGCATTAAACAAATCATCTTTTTCTTTG--GAATCTTTTATATAAGTGTCGATTAAC 18445
| |||| |||||||| || ||| | ||||| | ||||| || || | ||
Sbjct 58351 GACAGCACGAAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAA 58294
Query 18446 AAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTA 18505
| || ||||| || ||||| || | || || || |||||||| | ||||||| |
Sbjct 58293 AGCGAGTACATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGC 58234
Query 18506 GCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCG 18565
|| ||||| |||||||| | || | | | ||||| ||| || ||
Sbjct 58233 GCTTCGGGGAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCA 58174
Query 18566 TCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATC-CTTGAG 18624
|||| | || || || || | ||| | | |||||||| |||||| || | ||
Sbjct 58173 TCAGATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAG 58114
Query 18625 ATTGTT--CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGAT 18682
| ||| ||| | | || |||| ||| ||||| |||||||| | |||||||| |||
Sbjct 58113 GTCGTTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGAT 58054
Query 18683 GATTCGGCCTGTTTGTACATTT 18704
| |||||| | ||||||||||
Sbjct 58053 GCTTCGGCTTTCTTGTACATTT 58032
>seq14446
Length=62709
Score = 98.7 bits (108), Expect = 1e-15
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA-AGATTC 155881
||||| || ||| | || || ||||||||||| || ||||| | || || || || |
Sbjct 47814 ATGCAGATCTTTGTCAAGACCTTGACTGGAAAGACCATTACCCTTGAGGTTGAGAGCAGC 47755
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| || || || | || || || || || || ||||| || ||||| ||
Sbjct 47754 -GACACGATTGACAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATCCCACCAGACCA 47696
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
||||| ||||| | |||||| || |||||||| || | | ||||| |||| |||||
Sbjct 47695 GCAAAGGTTGATCTTTGCCGGGAAACAGCTCGAGGACGGCCGTACTTTGGCAGACTATAA 47636
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034
||| || ||| |||| || ||||| |||||
Sbjct 47635 TATCCAGAAGGAGTCGACCCTCCATTTGGTGTT 47603
>seq11586
Length=26096
Score = 98.7 bits (108), Expect = 1e-15
Identities = 363/562 (65%), Gaps = 12/562 (2%)
Strand=Plus/Minus
Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208
|| || | ||| ||||| || ||| | ||| || || | || || | ||| ||
Sbjct 4345 TACAAAAGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAG 4286
Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268
|| |||||||| ||||| | || | ||||| |||||||| |||| |||||| | |
Sbjct 4285 AAGGTTAACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCA 4226
Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328
||||||||||| ||||| || ||||| || || || | || |||||||| | | |
Sbjct 4225 GAAAAGAATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCT-CAGA 4167
Query 18329 TTGCTCAGTATCCATTTTTGTGCCC-ATTCTCCTTNNNNNNNNATACACGGTATACTCTC 18387
||| ||||| |||| || | |||| || || || ||||
Sbjct 4166 ACCATCA--ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTC 4110
Query 18388 TATAGCATTAAACAAATCATCTTTTTCTTTG--GAATCTTTTATATAAGTGTCGATTAAC 18445
| |||| |||||||| || ||| | ||||| | ||||| || || | ||
Sbjct 4109 GACAGCACGAAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAA 4052
Query 18446 AAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTA 18505
| || ||||| || ||||| || | || || || |||||||| | ||||||| |
Sbjct 4051 AGCGAGTACATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGC 3992
Query 18506 GCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCG 18565
|| ||||| |||||||| | || | | | ||||| ||| || ||
Sbjct 3991 GCTTCGGGGAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCA 3932
Query 18566 TCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATC-CTTGAG 18624
|||| | || || || || | ||| | | |||||||| |||||| || | ||
Sbjct 3931 TCAGATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAG 3872
Query 18625 ATTGTT--CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGAT 18682
| ||| ||| | | || |||| ||| ||||| |||||||| | |||||||| |||
Sbjct 3871 GTCGTTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGAT 3812
Query 18683 GATTCGGCCTGTTTGTACATTT 18704
| |||||| | ||||||||||
Sbjct 3811 GCTTCGGCTTTCTTGTACATTT 3790
>seq16048
Length=246288
Score = 95.1 bits (104), Expect = 2e-14
Identities = 362/562 (64%), Gaps = 12/562 (2%)
Strand=Plus/Minus
Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208
|| || | ||| ||||| || ||| | ||| || || | || || | ||| ||
Sbjct 204522 TACAAAAGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAG 204463
Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268
|| |||||||| ||||| | || | ||||| |||||||| |||| |||||| | |
Sbjct 204462 AAGGTTAACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCA 204403
Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328
||||||||||| ||||| || ||||| || || || | || |||||||| | | |
Sbjct 204402 GAAAAGAATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCT-CAGA 204344
Query 18329 TTGCTCAGTATCCATTTTTGTGCCC-ATTCTCCTTNNNNNNNNATACACGGTATACTCTC 18387
||| ||||| |||| || | |||| || || || ||||
Sbjct 204343 ACCATCA--ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTC 204287
Query 18388 TATAGCATTAAACAAATCATCTTTTTCTTTG--GAATCTTTTATATAAGTGTCGATTAAC 18445
| |||| |||||||| || ||| | ||||| | ||||| || || | ||
Sbjct 204286 GACAGCACGAAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAA 204229
Query 18446 AAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTA 18505
| || ||||| || ||||| || | || || || |||||||| | ||||||| |
Sbjct 204228 AGCGAGTACATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGC 204169
Query 18506 GCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCG 18565
|| ||||| |||||||| | || | | | ||||| ||| || ||
Sbjct 204168 GCTTCGGGGAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCA 204109
Query 18566 TCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATC-CTTGAG 18624
|||| | || || || || | ||| | | |||||||| ||||| || | ||
Sbjct 204108 TCAGATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTCAAG 204049
Query 18625 ATTGTT--CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGAT 18682
| ||| ||| | | || |||| ||| ||||| |||||||| | |||||||| |||
Sbjct 204048 GTCGTTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGAT 203989
Query 18683 GATTCGGCCTGTTTGTACATTT 18704
| |||||| | ||||||||||
Sbjct 203988 GCTTCGGCTTTCTTGTACATTT 203967
>seq16084
Length=201933
Score = 93.3 bits (102), Expect = 6e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || ||||| ||||| || || || |||| || || | |||
Sbjct 158 ATGCAAATCTTTGTCAAGACTTTGACGGGAAAGACGATCACCCTAGAGGTAGAGAACTCT 217
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || ||||| || ||| || || ||||| || || || || ||||| |||
Sbjct 218 GACACGATCGACAACGTAAAGTCTAAGATCCAGGATAAGGAGGGGATTCCACCAGACCAA 277
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | | |||| ||| || || |||||||||||| |||| || | || || ||
Sbjct 278 CAACGGCTAATTTTTGCGGGAAAACAGCTCGAAGATGGACGAACACTAGCCGACTACAAC 337
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034
|| || ||| || | |||||||| || |||||
Sbjct 338 AT-TCAAAAGGAATCAACGCTTCACTTGGTGTT 369
>seq13853
Length=43806
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | ||||| | || || || || || || ||||||||||| |||
Sbjct 18650 ATGCAAATCTTCGTGAAAACCCTAACCGGCAAGACAATCACTCTAGAAGTCGAAAGCTCT 18709
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || |||| ||||| ||||| || ||||| || || || || ||
Sbjct 18710 GACACGATCGACAATGTCAAAACAAAAATCCAAGACAAGGAAGGAATTCCCCCGGACCAG 18769
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | |||| | ||| ||||| ||||| ||||| | | ||||| | ||||| |
Sbjct 18770 CAACGTCTGATCTTTGCTGGTAAACAGCTTGAAGACGGCCGTACTTTGGCTGATTACA-- 18827
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031
| ||||||| ||| |||| ||||| || ||
Sbjct 18828 ACATCCAAAAGGAGTCGACCCTTCACTTGGT 18858
Score = 87.8 bits (96), Expect = 3e-12
Identities = 147/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | ||||| | || | || || || || ||||||||||| |||
Sbjct 9068 ATGCAAATCTTCGTGAAAACCCTAACCGACAAGACAATCACTCTAGAAGTCGAAAGCTCT 9127
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || |||| ||||| ||||| || ||||| || || || || ||
Sbjct 9128 GACACGATCGACAATGTCAAAACAAAAATCCAAGACAAGGAAGGAATTCCCCCGGACCAG 9187
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | |||| | ||| ||||| ||||| ||||| | | ||||| | ||||| |
Sbjct 9188 CAACGTCTGATCTTTGCTGGTAAACAGCTTGAAGACGGCCGTACTTTGGCTGATTACA-- 9245
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031
| ||||||| ||| |||| ||||| || ||
Sbjct 9246 ACATCCAAAAGGAGTCGACCCTTCACTTGGT 9276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731459516940800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |