Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq15946 98.7 1e-15 seq14446 98.7 1e-15 seq11586 98.7 1e-15 seq16048 95.1 2e-14 seq16084 93.3 6e-14 seq13853 91.5 2e-13 >seq15946 Length=172941 Score = 98.7 bits (108), Expect = 1e-15 Identities = 363/562 (65%), Gaps = 12/562 (2%) Strand=Plus/Minus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 || || | ||| ||||| || ||| | ||| || || | || || | ||| || Sbjct 58587 TACAAAAGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAG 58528 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || |||||||| ||||| | || | ||||| |||||||| |||| |||||| | | Sbjct 58527 AAGGTTAACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCA 58468 Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328 ||||||||||| ||||| || ||||| || || || | || |||||||| | | | Sbjct 58467 GAAAAGAATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCT-CAGA 58409 Query 18329 TTGCTCAGTATCCATTTTTGTGCCC-ATTCTCCTTNNNNNNNNATACACGGTATACTCTC 18387 ||| ||||| |||| || | |||| || || || |||| Sbjct 58408 ACCATCA--ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTC 58352 Query 18388 TATAGCATTAAACAAATCATCTTTTTCTTTG--GAATCTTTTATATAAGTGTCGATTAAC 18445 | |||| |||||||| || ||| | ||||| | ||||| || || | || Sbjct 58351 GACAGCACGAAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAA 58294 Query 18446 AAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTA 18505 | || ||||| || ||||| || | || || || |||||||| | ||||||| | Sbjct 58293 AGCGAGTACATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGC 58234 Query 18506 GCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCG 18565 || ||||| |||||||| | || | | | ||||| ||| || || Sbjct 58233 GCTTCGGGGAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCA 58174 Query 18566 TCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATC-CTTGAG 18624 |||| | || || || || | ||| | | |||||||| |||||| || | || Sbjct 58173 TCAGATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAG 58114 Query 18625 ATTGTT--CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGAT 18682 | ||| ||| | | || |||| ||| ||||| |||||||| | |||||||| ||| Sbjct 58113 GTCGTTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGAT 58054 Query 18683 GATTCGGCCTGTTTGTACATTT 18704 | |||||| | |||||||||| Sbjct 58053 GCTTCGGCTTTCTTGTACATTT 58032 >seq14446 Length=62709 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA-AGATTC 155881 ||||| || ||| | || || ||||||||||| || ||||| | || || || || | Sbjct 47814 ATGCAGATCTTTGTCAAGACCTTGACTGGAAAGACCATTACCCTTGAGGTTGAGAGCAGC 47755 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || | || || || || || || ||||| || ||||| || Sbjct 47754 -GACACGATTGACAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATCCCACCAGACCA 47696 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| ||||| | |||||| || |||||||| || | | ||||| |||| ||||| Sbjct 47695 GCAAAGGTTGATCTTTGCCGGGAAACAGCTCGAGGACGGCCGTACTTTGGCAGACTATAA 47636 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||| || ||| |||| || ||||| ||||| Sbjct 47635 TATCCAGAAGGAGTCGACCCTCCATTTGGTGTT 47603 >seq11586 Length=26096 Score = 98.7 bits (108), Expect = 1e-15 Identities = 363/562 (65%), Gaps = 12/562 (2%) Strand=Plus/Minus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 || || | ||| ||||| || ||| | ||| || || | || || | ||| || Sbjct 4345 TACAAAAGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAG 4286 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || |||||||| ||||| | || | ||||| |||||||| |||| |||||| | | Sbjct 4285 AAGGTTAACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCA 4226 Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328 ||||||||||| ||||| || ||||| || || || | || |||||||| | | | Sbjct 4225 GAAAAGAATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCT-CAGA 4167 Query 18329 TTGCTCAGTATCCATTTTTGTGCCC-ATTCTCCTTNNNNNNNNATACACGGTATACTCTC 18387 ||| ||||| |||| || | |||| || || || |||| Sbjct 4166 ACCATCA--ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTC 4110 Query 18388 TATAGCATTAAACAAATCATCTTTTTCTTTG--GAATCTTTTATATAAGTGTCGATTAAC 18445 | |||| |||||||| || ||| | ||||| | ||||| || || | || Sbjct 4109 GACAGCACGAAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAA 4052 Query 18446 AAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTA 18505 | || ||||| || ||||| || | || || || |||||||| | ||||||| | Sbjct 4051 AGCGAGTACATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGC 3992 Query 18506 GCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCG 18565 || ||||| |||||||| | || | | | ||||| ||| || || Sbjct 3991 GCTTCGGGGAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCA 3932 Query 18566 TCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATC-CTTGAG 18624 |||| | || || || || | ||| | | |||||||| |||||| || | || Sbjct 3931 TCAGATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAG 3872 Query 18625 ATTGTT--CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGAT 18682 | ||| ||| | | || |||| ||| ||||| |||||||| | |||||||| ||| Sbjct 3871 GTCGTTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGAT 3812 Query 18683 GATTCGGCCTGTTTGTACATTT 18704 | |||||| | |||||||||| Sbjct 3811 GCTTCGGCTTTCTTGTACATTT 3790 >seq16048 Length=246288 Score = 95.1 bits (104), Expect = 2e-14 Identities = 362/562 (64%), Gaps = 12/562 (2%) Strand=Plus/Minus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 || || | ||| ||||| || ||| | ||| || || | || || | ||| || Sbjct 204522 TACAAAAGACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAG 204463 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || |||||||| ||||| | || | ||||| |||||||| |||| |||||| | | Sbjct 204462 AAGGTTAACCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCA 204403 Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328 ||||||||||| ||||| || ||||| || || || | || |||||||| | | | Sbjct 204402 GAAAAGAATATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCT-CAGA 204344 Query 18329 TTGCTCAGTATCCATTTTTGTGCCC-ATTCTCCTTNNNNNNNNATACACGGTATACTCTC 18387 ||| ||||| |||| || | |||| || || || |||| Sbjct 204343 ACCATCA--ATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCA-GGAATCGTCTC 204287 Query 18388 TATAGCATTAAACAAATCATCTTTTTCTTTG--GAATCTTTTATATAAGTGTCGATTAAC 18445 | |||| |||||||| || ||| | ||||| | ||||| || || | || Sbjct 204286 GACAGCACGAAACAAAT--TCGACTTCAACGACGAATCCTGAATATACGTCTCAAGCAAA 204229 Query 18446 AAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTA 18505 | || ||||| || ||||| || | || || || |||||||| | ||||||| | Sbjct 204228 AGCGAGTACATCTCCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGC 204169 Query 18506 GCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCG 18565 || ||||| |||||||| | || | | | ||||| ||| || || Sbjct 204168 GCTTCGGGGAGCTGAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCA 204109 Query 18566 TCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATC-CTTGAG 18624 |||| | || || || || | ||| | | |||||||| ||||| || | || Sbjct 204108 TCAGATGCGGCAAAGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTCAAG 204049 Query 18625 ATTGTT--CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGAT 18682 | ||| ||| | | || |||| ||| ||||| |||||||| | |||||||| ||| Sbjct 204048 GTCGTTGACCAGTGACGTAAGTCTTGTGAAAGATCGACTTCTTCAGCCGTCCAAAACGAT 203989 Query 18683 GATTCGGCCTGTTTGTACATTT 18704 | |||||| | |||||||||| Sbjct 203988 GCTTCGGCTTTCTTGTACATTT 203967 >seq16084 Length=201933 Score = 93.3 bits (102), Expect = 6e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| ||||| || || || |||| || || | ||| Sbjct 158 ATGCAAATCTTTGTCAAGACTTTGACGGGAAAGACGATCACCCTAGAGGTAGAGAACTCT 217 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||| || || ||||| || || || || ||||| ||| Sbjct 218 GACACGATCGACAACGTAAAGTCTAAGATCCAGGATAAGGAGGGGATTCCACCAGACCAA 277 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| || || |||||||||||| |||| || | || || || Sbjct 278 CAACGGCTAATTTTTGCGGGAAAACAGCTCGAAGATGGACGAACACTAGCCGACTACAAC 337 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| || | |||||||| || ||||| Sbjct 338 AT-TCAAAAGGAATCAACGCTTCACTTGGTGTT 369 >seq13853 Length=43806 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || || || || || || ||||||||||| ||| Sbjct 18650 ATGCAAATCTTCGTGAAAACCCTAACCGGCAAGACAATCACTCTAGAAGTCGAAAGCTCT 18709 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || |||| ||||| ||||| || ||||| || || || || || Sbjct 18710 GACACGATCGACAATGTCAAAACAAAAATCCAAGACAAGGAAGGAATTCCCCCGGACCAG 18769 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | ||| ||||| ||||| ||||| | | ||||| | ||||| | Sbjct 18770 CAACGTCTGATCTTTGCTGGTAAACAGCTTGAAGACGGCCGTACTTTGGCTGATTACA-- 18827 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| |||| ||||| || || Sbjct 18828 ACATCCAAAAGGAGTCGACCCTTCACTTGGT 18858 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || | || || || || ||||||||||| ||| Sbjct 9068 ATGCAAATCTTCGTGAAAACCCTAACCGACAAGACAATCACTCTAGAAGTCGAAAGCTCT 9127 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || |||| ||||| ||||| || ||||| || || || || || Sbjct 9128 GACACGATCGACAATGTCAAAACAAAAATCCAAGACAAGGAAGGAATTCCCCCGGACCAG 9187 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | ||| ||||| ||||| ||||| | | ||||| | ||||| | Sbjct 9188 CAACGTCTGATCTTTGCTGGTAAACAGCTTGAAGACGGCCGTACTTTGGCTGATTACA-- 9245 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| |||| ||||| || || Sbjct 9246 ACATCCAAAAGGAGTCGACCCTTCACTTGGT 9276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731459516940800