Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq15779 118 2e-21 seq13853 118 2e-21 seq16048 100 5e-16 seq15946 100 5e-16 seq13717 100 5e-16 seq11586 100 5e-16 seq15654 98.7 2e-15 seq22481 91.5 3e-13 seq14668 91.5 3e-13 seq14446 91.5 3e-13 seq4575 91.5 3e-13 seq15063 89.7 9e-13 seq14285 89.7 9e-13 >seq15779 Length=145502 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| |||| || || || | ||| | ||| || ||| ||||| || Sbjct 122385 ATGCCACCACGAAGACGTAGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTATAGTCG 122326 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || |||| || | || ||||||||||| || | ||||| ||||||||| Sbjct 122325 GCCAAGGTACGCCCGTCCTCAAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGT 122266 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || ||| | || ||||| || || || || || Sbjct 122265 GGGATCCCCTCCTTATCTTGGATCTTAGTCTTGACATTGTCGATGGTGTCAGAACTCTCA 122206 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| ||||| |||||||| || || | |||||||||||| Sbjct 122205 ACCTCAAGGGTAATCGTTTTGCCAGTTAACGTCTTCACGAATATCTGCAT 122156 >seq13853 Length=43806 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || || || || || ||||||| ||| || |||||| |||||| Sbjct 19107 ATCCCACCACGGAGACGCAACACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCT 19048 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || |||| || | ||| || ||||||||||| || || || ||||| || Sbjct 19047 GCCAATGTGCGGCCGTCCTCGAGTTGCTTCCCAGCAAAAATCAACCTTTGCTGGTCCGGA 18988 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || ||| | || || || || || || || ||| Sbjct 18987 GGAATACCCTCCTTATCCTGAATCTTAGTCTTAACGTTGTCAATTGTGTCCGAGCTCTCT 18928 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| || |||||||| || || || | ||| |||||||| Sbjct 18927 ACCTCGAGAGTAATCGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 18878 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| | |||| || |||| || | |||||||||||||| || | | Sbjct 18831 ATGTTGTAATCAGCCAAAGTACGGCCGTCTTCAAGCTGTTTACCAGCAAAGATCAGACGT 18772 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| || || |||||||| || ||||| ||||| |||| ||||| || || Sbjct 18771 TGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGGATTTTTGTTTTGACATTGTCGATCGTG 18712 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||| ||||||||||| || || || || |||| ||||| | ||| || ||| Sbjct 18711 TCAGAGCTTTCGACTTCTAGAGTGATTGTCTTGCCGGTTAGGGTTTTCACGAAGATTTGC 18652 Query 172068 AT 172069 || Sbjct 18651 AT 18650 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| | |||| || |||| || | |||||||||||||| || | | Sbjct 9249 ATGTTGTAATCAGCCAAAGTACGGCCGTCTTCAAGCTGTTTACCAGCAAAGATCAGACGT 9190 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| || || |||||||| || ||||| ||||| |||| ||||| || || Sbjct 9189 TGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGGATTTTTGTTTTGACATTGTCGATCGTG 9130 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||| ||||||||||| || || || | |||| ||||| | ||| || ||| Sbjct 9129 TCAGAGCTTTCGACTTCTAGAGTGATTGTCTTGTCGGTTAGGGTTTTCACGAAGATTTGC 9070 Query 172068 AT 172069 || Sbjct 9069 AT 9068 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || | ||| | || | |||| ||| || || || Sbjct 9523 ATACCACCACGAAGACGCAACACCAGATGGAGGGTCGATCCTTTG--AATGTTGTAGTCG 9466 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || |||| || | || || |||||||| || |||||||||||||| || Sbjct 9465 GCCAATGTACGACCGTCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGG 9406 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || ||||| | || || || || || || || || Sbjct 9405 GGAATACCCTCCTTGTCCTGAATTTTTGTCTTGACGTTGTCAATGGTGTCCGAGCTCTCC 9346 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| || |||||||| || || || | ||| |||||||| Sbjct 9345 ACCTCGAGAGTAATCGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 9296 >seq16048 Length=246288 Score = 100 bits (110), Expect = 5e-16 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184 ||| ||||| || || | ||| ||||| | ||| || | |||||| || ||||| Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455 Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACTAGAAAAGA 39243 || ||||| | ||| | ||||||||||||||| || | ||| ||||| | |||||||| Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 204396 Query 39244 ATATACCCTCCACACACGCAAATGCTATTATTCT 39277 |||| ||||| ||||||||||| || || || || Sbjct 204395 ATATCCCCTCGACACACGCAAAAGCGATAATCCT 204362 >seq15946 Length=172941 Score = 100 bits (110), Expect = 5e-16 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184 ||| ||||| || || | ||| ||||| | ||| || | |||||| || ||||| Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520 Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACTAGAAAAGA 39243 || ||||| | ||| | ||||||||||||||| || | ||| ||||| | |||||||| Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 58461 Query 39244 ATATACCCTCCACACACGCAAATGCTATTATTCT 39277 |||| ||||| ||||||||||| || || || || Sbjct 58460 ATATCCCCTCGACACACGCAAAAGCGATAATCCT 58427 >seq13717 Length=68558 Score = 100 bits (110), Expect = 5e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||||| || || ||||| | | |||||||| ||||| || ||||| | Sbjct 35078 CGTCTTCAAGCTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATGCCTTCCT 35137 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || |||| ||||| || || ||||| ||||| || ||||| || | Sbjct 35138 TGTCTTGGATCTTGGTTTTCACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTA 35197 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 | || || || |||| ||||| | ||| ||||||||||| || Sbjct 35198 TCGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTTTTT 35240 >seq11586 Length=26096 Score = 100 bits (110), Expect = 5e-16 Identities = 116/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184 ||| ||||| || || | ||| ||||| | ||| || | |||||| || ||||| Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278 Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACTAGAAAAGA 39243 || ||||| | ||| | ||||||||||||||| || | ||| ||||| | |||||||| Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 4219 Query 39244 ATATACCCTCCACACACGCAAATGCTATTATTCT 39277 |||| ||||| ||||||||||| || || || || Sbjct 4218 ATATCCCCTCGACACACGCAAAAGCGATAATCCT 4185 >seq15654 Length=163759 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || || || | || | ||| || ||| || || || Sbjct 112016 ATACCACCACGAAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCA 111957 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || | || || | ||||| |||||||| || | ||||| ||||||||| Sbjct 111956 GCCAAAGTACGACCATCCTCGAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGT 111897 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT-TC 172018 || || || || |||||||| || ||| | || ||||| || || || | | | || Sbjct 111896 GGGATGCCCTCCTTATCTTGGATCTTAGTCTTGACATTGTCAATTGTGTC-GCTGCTCTC 111838 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| ||||| |||||||| || |||| || |||||||| Sbjct 111837 GACCTCGAGGGTAATCGTTTTCCCAGTTAAGGTCTTAACAAAGATCTGCAT 111787 >seq22481 Length=674 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| ||| || ||| || || || | |||| || | || || | ||||| ||| Sbjct 567 GTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTACGACCATCCTCGAGCTGTTTGCCA 508 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || | ||||||||||| ||||| || || || |||||||| || ||| | || Sbjct 507 GCAAAGATCAGCCTCTGTTGGTCTGGTGGGATACCCTCCTTATCTTGGATCTTAGTCTTG 448 Query 171993 ACATTAGTTATAGTATCTGACGAT-TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 ||||| || || || | | | || || || || ||||| ||||| |||||||| || Sbjct 447 ACATTGTCAATGGTGTC-GCTGCTCTCAACCTCGAGGGTAATCGTTTTCCCAGTTAAGGT 389 Query 172052 TTTAATGAATATCTGCA 172068 |||| || ||||||| Sbjct 388 CTTAACAAAGATCTGCA 372 >seq14668 Length=62046 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||||||||| |||| || | || |||| || | ||||||||||||||| || | || Sbjct 42283 AATATTATAGTCTGCCAACGTGCGCCCGTCCTCGAGTTGTTTACCAGCAAAGATCAGCCT 42224 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || ||||| ||||| || ||||| ||||| || ||||| | || ||||| || || Sbjct 42223 TTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATTGT 42164 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || || || || || || ||||| || || || || || || | ||| || || Sbjct 42163 GTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTG 42104 Query 172067 CAT 172069 ||| Sbjct 42103 CAT 42101 >seq14446 Length=62709 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| | ||||| || | ||||| ||||||||||| || ||||| |||||||| || Sbjct 47897 TGTTTCCAGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGGATC 47956 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGAT-TCTACTTCTAGAGTAATGGTTTTACC 172042 ||| | || ||||| || || || | | | || || || || ||||||||||| || Sbjct 47957 TTAGTCTTGACATTGTCGATGGTGTC-GCTGCTCTCGACCTCGAGGGTAATGGTTTTCCC 48015 Query 172043 AGTTAATGTTTTAATGAATATCTGCAT 172069 |||||| || || | ||| |||||||| Sbjct 48016 AGTTAAAGTCTTCACGAAAATCTGCAT 48042 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 171909 CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCT 171968 ||| |||| || | |||||||||||||| || | ||||| ||||| ||||| || ||| Sbjct 48110 CGTCCGTCCTCGAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCT 48169 Query 171969 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGA 172028 || ||||| || ||||| | || ||||| ||||| || || || || || || Sbjct 48170 TCCTTATCCTGGATTTTGGTCTTGACATTGTCAATAGTGTCGGAACTCTCAACCTCGAGG 48229 Query 172029 GTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || || || | ||| || ||||| Sbjct 48230 GTGATAGTCTTGCCAGTCAAAGTCTTTACGAAGATTTGCAT 48270 >seq4575 Length=13488 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||||||||| |||| || | || |||| || | ||||||||||||||| || | || Sbjct 343 AATATTATAGTCTGCCAACGTGCGCCCGTCCTCGAGTTGTTTACCAGCAAAGATCAGCCT 284 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || ||||| ||||| || ||||| ||||| || ||||| | || ||||| || || Sbjct 283 TTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATCGT 224 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || || || || || || ||||| || || || || || || | ||| || || Sbjct 223 GTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTG 164 Query 172067 CAT 172069 ||| Sbjct 163 CAT 161 >seq15063 Length=88444 Score = 89.7 bits (98), Expect = 9e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 |||||||| ||||| || ||| | || |||||| || ||||| ||||| |||||| Sbjct 67801 CCTTCTTTGTCTTGAATCTTAGTCTTAACATTATCGATGGTATCACTGGATTCAACTTCT 67860 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || ||||| ||||||| ||||| | ||||||||||||||| Sbjct 67861 AGGGTTATTGTTTTCCCAGTTAGGGTTTTCACGAATATCTGCATTTT 67907 >seq14285 Length=112008 Score = 89.7 bits (98), Expect = 9e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 |||||||| ||||| || ||| |||| |||||| ||||| || ||||| ||||| Sbjct 60865 CCTTCTTTGTCTTGGATCTTAGTTTTGACATTATCAATAGTGTCACTGGATTCAACTTCA 60924 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| ||||| ||||||| ||||| | ||| ||||||||||| Sbjct 60925 AGGGTAATTGTTTTCCCAGTTAGGGTTTTCACGAAGATCTGCATTTT 60971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904625865350400