Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq15779 118 2e-21
seq13853 118 2e-21
seq16048 100 5e-16
seq15946 100 5e-16
seq13717 100 5e-16
seq11586 100 5e-16
seq15654 98.7 2e-15
seq22481 91.5 3e-13
seq14668 91.5 3e-13
seq14446 91.5 3e-13
seq4575 91.5 3e-13
seq15063 89.7 9e-13
seq14285 89.7 9e-13
>seq15779
Length=145502
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | ||| |||| || || || | ||| | ||| || ||| ||||| ||
Sbjct 122385 ATGCCACCACGAAGACGTAGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTATAGTCG 122326
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || | || |||| || | || ||||||||||| || | ||||| |||||||||
Sbjct 122325 GCCAAGGTACGCCCGTCCTCAAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGT 122266
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || |||||||| || ||| | || ||||| || || || || ||
Sbjct 122265 GGGATCCCCTCCTTATCTTGGATCTTAGTCTTGACATTGTCGATGGTGTCAGAACTCTCA 122206
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || ||||| ||||| |||||||| || || | ||||||||||||
Sbjct 122205 ACCTCAAGGGTAATCGTTTTGCCAGTTAACGTCTTCACGAATATCTGCAT 122156
>seq13853
Length=43806
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | || || || || || || ||||||| ||| || |||||| ||||||
Sbjct 19107 ATCCCACCACGGAGACGCAACACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCT 19048
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || | || |||| || | ||| || ||||||||||| || || || ||||| ||
Sbjct 19047 GCCAATGTGCGGCCGTCCTCGAGTTGCTTCCCAGCAAAAATCAACCTTTGCTGGTCCGGA 18988
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || ||||| || || ||| | || || || || || || || |||
Sbjct 18987 GGAATACCCTCCTTATCCTGAATCTTAGTCTTAACGTTGTCAATTGTGTCCGAGCTCTCT 18928
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || |||||||| || |||||||| || || || | ||| ||||||||
Sbjct 18927 ACCTCGAGAGTAATCGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 18878
Score = 98.7 bits (108), Expect = 2e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|| || ||||| | |||| || |||| || | |||||||||||||| || | |
Sbjct 18831 ATGTTGTAATCAGCCAAAGTACGGCCGTCTTCAAGCTGTTTACCAGCAAAGATCAGACGT 18772
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
|| ||||| || || |||||||| || ||||| ||||| |||| ||||| || ||
Sbjct 18771 TGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGGATTTTTGTTTTGACATTGTCGATCGTG 18712
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || ||| ||||||||||| || || || || |||| ||||| | ||| || |||
Sbjct 18711 TCAGAGCTTTCGACTTCTAGAGTGATTGTCTTGCCGGTTAGGGTTTTCACGAAGATTTGC 18652
Query 172068 AT 172069
||
Sbjct 18651 AT 18650
Score = 95.1 bits (104), Expect = 2e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|| || ||||| | |||| || |||| || | |||||||||||||| || | |
Sbjct 9249 ATGTTGTAATCAGCCAAAGTACGGCCGTCTTCAAGCTGTTTACCAGCAAAGATCAGACGT 9190
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
|| ||||| || || |||||||| || ||||| ||||| |||| ||||| || ||
Sbjct 9189 TGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGGATTTTTGTTTTGACATTGTCGATCGTG 9130
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || ||| ||||||||||| || || || | |||| ||||| | ||| || |||
Sbjct 9129 TCAGAGCTTTCGACTTCTAGAGTGATTGTCTTGTCGGTTAGGGTTTTCACGAAGATTTGC 9070
Query 172068 AT 172069
||
Sbjct 9069 AT 9068
Score = 87.8 bits (96), Expect = 3e-12
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||| || || || | ||| | || | |||| ||| || || ||
Sbjct 9523 ATACCACCACGAAGACGCAACACCAGATGGAGGGTCGATCCTTTG--AATGTTGTAGTCG 9466
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| || | || |||| || | || || |||||||| || |||||||||||||| ||
Sbjct 9465 GCCAATGTACGACCGTCCTCGAGCTGCTTTCCAGCAAATATCAATCTCTGTTGGTCTGGG 9406
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || || || || ||||| | || || || || || || || ||
Sbjct 9405 GGAATACCCTCCTTGTCCTGAATTTTTGTCTTGACGTTGTCAATGGTGTCCGAGCTCTCC 9346
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || |||||||| || |||||||| || || || | ||| ||||||||
Sbjct 9345 ACCTCGAGAGTAATCGTCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 9296
>seq16048
Length=246288
Score = 100 bits (110), Expect = 5e-16
Identities = 116/154 (75%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184
||| ||||| || || | ||| ||||| | ||| || | |||||| || |||||
Sbjct 204514 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 204455
Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACTAGAAAAGA 39243
|| ||||| | ||| | ||||||||||||||| || | ||| ||||| | ||||||||
Sbjct 204454 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 204396
Query 39244 ATATACCCTCCACACACGCAAATGCTATTATTCT 39277
|||| ||||| ||||||||||| || || || ||
Sbjct 204395 ATATCCCCTCGACACACGCAAAAGCGATAATCCT 204362
>seq15946
Length=172941
Score = 100 bits (110), Expect = 5e-16
Identities = 116/154 (75%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184
||| ||||| || || | ||| ||||| | ||| || | |||||| || |||||
Sbjct 58579 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 58520
Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACTAGAAAAGA 39243
|| ||||| | ||| | ||||||||||||||| || | ||| ||||| | ||||||||
Sbjct 58519 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 58461
Query 39244 ATATACCCTCCACACACGCAAATGCTATTATTCT 39277
|||| ||||| ||||||||||| || || || ||
Sbjct 58460 ATATCCCCTCGACACACGCAAAAGCGATAATCCT 58427
>seq13717
Length=68558
Score = 100 bits (110), Expect = 5e-16
Identities = 120/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972
|||| || | ||||| || || ||||| | | |||||||| ||||| || ||||| |
Sbjct 35078 CGTCTTCAAGCTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGAATGCCTTCCT 35137
Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032
| ||||| || || |||| ||||| || || ||||| ||||| || ||||| || |
Sbjct 35138 TGTCTTGGATCTTGGTTTTCACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTA 35197
Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075
| || || || |||| ||||| | ||| ||||||||||| ||
Sbjct 35198 TCGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATTTTTTT 35240
>seq11586
Length=26096
Score = 100 bits (110), Expect = 5e-16
Identities = 116/154 (75%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184
||| ||||| || || | ||| ||||| | ||| || | |||||| || |||||
Sbjct 4337 ACAAGCAAAGTCGCAGTGAAGACCCTCGTCACGAGAAATGAGTTCATTTGAGAAGGTTAA 4278
Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA-AAACTACTAGAAAAGA 39243
|| ||||| | ||| | ||||||||||||||| || | ||| ||||| | ||||||||
Sbjct 4277 CCCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGC-GCAGAAACTCCCAGAAAAGA 4219
Query 39244 ATATACCCTCCACACACGCAAATGCTATTATTCT 39277
|||| ||||| ||||||||||| || || || ||
Sbjct 4218 ATATCCCCTCGACACACGCAAAAGCGATAATCCT 4185
>seq15654
Length=163759
Score = 98.7 bits (108), Expect = 2e-15
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||| || | || || || | || | ||| || ||| || || ||
Sbjct 112016 ATACCACCACGAAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCA 111957
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| |||| || | || || | ||||| |||||||| || | ||||| |||||||||
Sbjct 111956 GCCAAAGTACGACCATCCTCGAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGT 111897
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT-TC 172018
|| || || || |||||||| || ||| | || ||||| || || || | | | ||
Sbjct 111896 GGGATGCCCTCCTTATCTTGGATCTTAGTCTTGACATTGTCAATTGTGTC-GCTGCTCTC 111838
Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || ||||| ||||| |||||||| || |||| || ||||||||
Sbjct 111837 GACCTCGAGGGTAATCGTTTTCCCAGTTAAGGTCTTAACAAAGATCTGCAT 111787
>seq22481
Length=674
Score = 91.5 bits (100), Expect = 3e-13
Identities = 140/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932
|||| ||| || ||| || || || | |||| || | || || | ||||| |||
Sbjct 567 GTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTACGACCATCCTCGAGCTGTTTGCCA 508
Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992
||||| || | ||||||||||| ||||| || || || |||||||| || ||| | ||
Sbjct 507 GCAAAGATCAGCCTCTGTTGGTCTGGTGGGATACCCTCCTTATCTTGGATCTTAGTCTTG 448
Query 171993 ACATTAGTTATAGTATCTGACGAT-TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051
||||| || || || | | | || || || || ||||| ||||| |||||||| ||
Sbjct 447 ACATTGTCAATGGTGTC-GCTGCTCTCAACCTCGAGGGTAATCGTTTTCCCAGTTAAGGT 389
Query 172052 TTTAATGAATATCTGCA 172068
|||| || |||||||
Sbjct 388 CTTAACAAAGATCTGCA 372
>seq14668
Length=62046
Score = 91.5 bits (100), Expect = 3e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
||||||||| |||| || | || |||| || | ||||||||||||||| || | ||
Sbjct 42283 AATATTATAGTCTGCCAACGTGCGCCCGTCCTCGAGTTGTTTACCAGCAAAGATCAGCCT 42224
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
|| ||||| ||||| || ||||| ||||| || ||||| | || ||||| || ||
Sbjct 42223 TTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATTGT 42164
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
|| || || || || || || ||||| || || || || || || | ||| || ||
Sbjct 42163 GTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTG 42104
Query 172067 CAT 172069
|||
Sbjct 42103 CAT 42101
>seq14446
Length=62709
Score = 91.5 bits (100), Expect = 3e-13
Identities = 110/147 (75%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983
||||| | ||||| || | ||||| ||||||||||| || ||||| |||||||| ||
Sbjct 47897 TGTTTCCAGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGGATC 47956
Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGAT-TCTACTTCTAGAGTAATGGTTTTACC 172042
||| | || ||||| || || || | | | || || || || ||||||||||| ||
Sbjct 47957 TTAGTCTTGACATTGTCGATGGTGTC-GCTGCTCTCGACCTCGAGGGTAATGGTTTTCCC 48015
Query 172043 AGTTAATGTTTTAATGAATATCTGCAT 172069
|||||| || || | ||| ||||||||
Sbjct 48016 AGTTAAAGTCTTCACGAAAATCTGCAT 48042
Score = 87.8 bits (96), Expect = 3e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 171909 CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCT 171968
||| |||| || | |||||||||||||| || | ||||| ||||| ||||| || |||
Sbjct 48110 CGTCCGTCCTCGAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCT 48169
Query 171969 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGA 172028
|| ||||| || ||||| | || ||||| ||||| || || || || || ||
Sbjct 48170 TCCTTATCCTGGATTTTGGTCTTGACATTGTCAATAGTGTCGGAACTCTCAACCTCGAGG 48229
Query 172029 GTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || || ||||| || || || | ||| || |||||
Sbjct 48230 GTGATAGTCTTGCCAGTCAAAGTCTTTACGAAGATTTGCAT 48270
>seq4575
Length=13488
Score = 91.5 bits (100), Expect = 3e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
||||||||| |||| || | || |||| || | ||||||||||||||| || | ||
Sbjct 343 AATATTATAGTCTGCCAACGTGCGCCCGTCCTCGAGTTGTTTACCAGCAAAGATCAGCCT 284
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
|| ||||| ||||| || ||||| ||||| || ||||| | || ||||| || ||
Sbjct 283 TTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGGATTTTGGTCTTGACATTGTCAATCGT 224
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
|| || || || || || || ||||| || || || || || || | ||| || ||
Sbjct 223 GTCGGAACTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTG 164
Query 172067 CAT 172069
|||
Sbjct 163 CAT 161
>seq15063
Length=88444
Score = 89.7 bits (98), Expect = 9e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025
|||||||| ||||| || ||| | || |||||| || ||||| ||||| ||||||
Sbjct 67801 CCTTCTTTGTCTTGAATCTTAGTCTTAACATTATCGATGGTATCACTGGATTCAACTTCT 67860
Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| || || ||||| ||||||| ||||| | |||||||||||||||
Sbjct 67861 AGGGTTATTGTTTTCCCAGTTAGGGTTTTCACGAATATCTGCATTTT 67907
>seq14285
Length=112008
Score = 89.7 bits (98), Expect = 9e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025
|||||||| ||||| || ||| |||| |||||| ||||| || ||||| |||||
Sbjct 60865 CCTTCTTTGTCTTGGATCTTAGTTTTGACATTATCAATAGTGTCACTGGATTCAACTTCA 60924
Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| ||||| ||||| ||||||| ||||| | ||| |||||||||||
Sbjct 60925 AGGGTAATTGTTTTCCCAGTTAGGGTTTTCACGAAGATCTGCATTTT 60971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904625865350400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |