Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq13658 118 3e-21
seq13639 118 3e-21
seq15487 109 2e-18
seq13599 105 2e-17
seq16192 96.9 1e-14
seq16048 86.0 2e-11
seq16162 84.2 6e-11
>seq13658
Length=94377
Score = 118 bits (130), Expect = 3e-21
Identities = 314/471 (67%), Gaps = 14/471 (3%)
Strand=Plus/Plus
Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT-TTGC--TTAAATCCA 288945
|| ||||||||||| || || || | ||||| || | |||| |||| | ||| ||
Sbjct 62818 ATGTCGGCTCTGTTAGTCGCAGCGACTACAATAACAC---CGGTGTTGCCCTCAAAACCG 62874
Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005
||||| || | || ||||| || || |||||||| || ||||| || | ||
Sbjct 62875 TCCATCTCAGTGAGAAGCTGATTCAGCGTCTGTTCCCTCTCGTCATTCCCTCCACC--AA 62932
Query 289006 TCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACAC 289065
| || | | | ||| | | | || |||||||||||||| |||| || | | |||
Sbjct 62933 TT-CCAGTACCCCTC---TGTCTCCCTACAGCATCAATTTCATCAACAAAGACAATGCAC 62988
Query 289066 GGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACA 289125
|||| ||||| | |||| || || | || | || || || || || | |||||||
Sbjct 62989 GGAGCATTTTCTTTCGCCTTTTTGAAAAGATCACGCACTCGAGAAGCACCCACACCAACA 63048
Query 289126 TACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGC 289184
|||| || |||||||| ||| | || | | || | ||| | ||| |||||| || ||
Sbjct 63049 AACATCTCGACAAATTCGGAACCAGA-AATCGAGAAGAACGGAACACCTGCTTCTCCAGC 63107
Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244
| ||| |||| || || ||||| || || || || || || | | ||||| || ||
Sbjct 63108 AATGGCCTTCGCTAGGAGGGTCTTTCCAGTCCCTGGAGGGCCGACAAGAAGAACACCTTT 63167
Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304
|| | || ||| |||| || | ||||||| |||| | ||||| || | |||
Sbjct 63168 AGGAATGCGAGCTCCAACAGAAGTAAACCTCTCAGGTTTCTTAAGGAATTCGACCACTTC 63227
Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAAT 289355
| | || | |||||| |||||| || || ||||| |||| || ||
Sbjct 63228 CATGAAATCCTGTTTTGCTTCATCAACACCAGCAACATCGTCAAATGTTAT 63278
>seq13639
Length=40771
Score = 118 bits (130), Expect = 3e-21
Identities = 209/298 (70%), Gaps = 10/298 (3%)
Strand=Plus/Plus
Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080
|||| | |||| || ||||||||||||||||| || | | ||||| | || |
Sbjct 21633 CTTTGTCTACCGACTGCATCAATTTCGTCAATAAACACGATGCACGGTGCCTTACTCTTT 21692
Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140
|| | |||| || || || || | | || |||| ||||| ||| |||||||||
Sbjct 21693 GCTTTCTCAAACAAGTCCCTCACTCTGCTCGCCCCAACCCCAACGAACAACTCTACAAAT 21752
Query 289141 TCAGAAGCGGAT-ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199
|||||||| | || ||| ||| | ||| || || ||||| ||||| || |||||
Sbjct 21753 TCAGAAGCTGCGCACGAGAA-GAACGGCACACCAGCCTCTCCTGCCACTGCTCTTGCCAG 21811
Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT-GGTACTTTTGCCC 289258
||||||||||| || || || || ||| |||| || | |||||| || | ||||| |
Sbjct 21812 CAGTGTCTTACCGGTACCTGGAGGACCCACTAACAG-GCACCCTTTCGGAATCTTTGCAC 21870
Query 289259 C---AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTC 289313
| ||||| | ||||| |||||| ||||||| || || || | ||||| ||| ||
Sbjct 21871 CTAGAGCAG---TGTATTTATCAGGGTTCTTTAAGAAATCGACCACTTCCTGAAGCTC 21925
>seq15487
Length=99601
Score = 109 bits (120), Expect = 2e-18
Identities = 167/238 (70%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462
|||||| || ||||| | ||| ||||| || ||||| |||||| | |||| | ||
Sbjct 65849 GGCGATCAGCCCACAGCGCTCACAGACATGAACTCTGTATGCATCACTTTGGTCAAACAG 65908
Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522
|| |||| ||| ||| |||||||| | |||||||||||| || ||||| || ||
Sbjct 65909 CCTCTCCTTAAGGAAATGAGCAGCACCGTGCGCAATCATACAATCTCGTTCCATCTCTCC 65968
Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582
|| |||||||||||||| |||| | ||||| || ||||| | || ||| | ||
Sbjct 65969 AAATCGAAGACCACCATCACGAGAACGTCCCTCAGCCGGCTGCCTGGTCAGAATCTGCAC 66028
Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640
||||| || |||| ||| |||| ||||||||||| || | ||||||
Sbjct 66029 CGGACCTCGTCCACGAGAATGTATCTTGTCATCAACCATATGCTTCAGTCTTTGGTAG 66086
>seq13599
Length=79719
Score = 105 bits (116), Expect = 2e-17
Identities = 311/471 (66%), Gaps = 14/471 (3%)
Strand=Plus/Minus
Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT-TTGC--TTAAATCCA 288945
|| ||||||||||| || || || | ||||| || | |||| |||| | ||| ||
Sbjct 37249 ATGTCGGCTCTGTTAGTCGCAGCGACTACAATAACAC---CGGTGTTGCCCTCAAACCCG 37193
Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005
||||| || | || ||||| || || |||||||| || || || || | ||
Sbjct 37192 TCCATCTCAGTGAGAAGCTGATTCAGCGTCTGTTCCCTCTCGTCGTTCCCTCCACC--AA 37135
Query 289006 TCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACAC 289065
| || | | | ||| | | | || |||||||||||||| |||| || | | |||
Sbjct 37134 TT-CCAGTACCCCTC---TGTCTCCCTACAGCATCAATTTCATCAACAAAGACAATGCAC 37079
Query 289066 GGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACA 289125
|||| ||||| | |||| || || | || | || || || || || | |||||||
Sbjct 37078 GGAGCATTTTCTTTCGCCTTTTTGAAAAGATCACGCACTCGAGAGGCACCCACACCAACA 37019
Query 289126 TACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGC 289184
|||| || |||||||| ||| | || | | || | ||| | ||| |||||| || ||
Sbjct 37018 AACATCTCGACAAATTCGGAACCAGA-AATCGAGAAGAACGGAACACCTGCTTCTCCAGC 36960
Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244
| ||| |||| || || ||||| || || || || || || | | ||||| || ||
Sbjct 36959 AATGGCCTTCGCTAGGAGGGTCTTTCCAGTCCCTGGAGGGCCGACAAGAAGAACACCTTT 36900
Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304
|| | || ||| |||| | | |||| || |||| | ||||| || | |||
Sbjct 36899 AGGAATGCGAGCTCCAACAGATGTGAACCTCTCGGGTTTCTTAAGGAATTCGACCACTTC 36840
Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAAT 289355
| | || | |||||| |||||| || || ||||| |||| || ||
Sbjct 36839 CATGAAATCCTGTTTTGCTTCATCAACACCAGCAACATCGTCAAATGTTAT 36789
>seq16192
Length=256051
Score = 96.9 bits (106), Expect = 1e-14
Identities = 84/102 (82%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923
||||||||| ||||||||||||| ||||| | |||||| | |||||||||||| |||
Sbjct 180984 ACACCAGCATAGTGGAAAGTATTGAGAGTCATTTGAGTGGCAGGCTCACCAATAGATTGA 180925
Query 301924 GCCGCAA-TCATACCAACCATTTCTCCTGGTGCTACAATAGA 301964
|| |||| ||| |||| ||||||||| || ||||| |||||
Sbjct 180924 GCAGCAACGCAT-CCAATCATTTCTCCCGGGGCTACCATAGA 180884
>seq16048
Length=246288
Score = 86.0 bits (94), Expect = 2e-11
Identities = 190/281 (68%), Gaps = 7/281 (2%)
Strand=Plus/Plus
Query 133081 TATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGATTTATT 133140
||||||||||||| | || | || ||| | ||||| || ||| ||| | ||
Sbjct 203935 TATGTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAAGCATCGTT 203994
Query 133141 TTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGC--CCTT-AC 133197
|||||| | ||||| ||| | || ||||| | |||||| | | |||| ||
Sbjct 203995 TTGGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGTCACTGGTCAACGACCTTGAC 204054
Query 133198 TGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTAT 133257
| |||||| ||||| || || || | || || ||||| || |||||| ||
Sbjct 204055 CGACGATGAACGCCATTTCATCACTCACGTTCTCGCCTTCTTTGCCGCATCTGATGGGAT 204114
Query 133258 TGTTCTTGAAAATTTAGGAACACGGTTTATG--GGAGAAGTTCAACTGGCCGAAGCCCGT 133315
|||||| || || | | ||||| ||| ||||| |||| || ||||||| |||
Sbjct 204115 TGTTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGA--TTCAGCTCCCCGAAGCGCGT 204172
Query 133316 GCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTC 133356
|| ||||| ||| | ||||||||||| || ||||| |||||
Sbjct 204173 GCGTTTTACGGGTTTCAGATTGCGATTGAGAATATTCATTC 204213
>seq16162
Length=245457
Score = 84.2 bits (92), Expect = 6e-11
Identities = 142/205 (69%), Gaps = 3/205 (1%)
Strand=Plus/Minus
Query 156049 TACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105
|||| || || ||||| ||| || || || || |||||||| | |||||| || | |
Sbjct 41309 TACCTTTTCTTTTGCCTCCACCTTGGTCAACGTATCGAGCAGTGTCATTGAACACCCTAA 41250
Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165
|||| || |||||||||| || || ||||| || || ||||| | ||| | || |
Sbjct 41249 GCATCGGGGTAATACCATTTGAGGTTCCATTTGTACCCCGAATGTAACTACCGGTTGCAC 41190
Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225
||| ||| ||||| | ||||||||||| | |||| ||| ||| || ||||
Sbjct 41189 GAATATTGTGAATCGACACACCAATACCACCAGCAGATTTGCTAATAACAGCACACTCCT 41130
Query 156226 TTACAGTATTGAAAATACCTTCAAT 156250
| | |||| | || ||||||||
Sbjct 41129 TCAATGTATCATAGATTCCTTCAAT 41105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1470967345690656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |