Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq13658 118 3e-21 seq13639 118 3e-21 seq15487 109 2e-18 seq13599 105 2e-17 seq16192 96.9 1e-14 seq16048 86.0 2e-11 seq16162 84.2 6e-11 >seq13658 Length=94377 Score = 118 bits (130), Expect = 3e-21 Identities = 314/471 (67%), Gaps = 14/471 (3%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT-TTGC--TTAAATCCA 288945 || ||||||||||| || || || | ||||| || | |||| |||| | ||| || Sbjct 62818 ATGTCGGCTCTGTTAGTCGCAGCGACTACAATAACAC---CGGTGTTGCCCTCAAAACCG 62874 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| || | || ||||| || || |||||||| || ||||| || | || Sbjct 62875 TCCATCTCAGTGAGAAGCTGATTCAGCGTCTGTTCCCTCTCGTCATTCCCTCCACC--AA 62932 Query 289006 TCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACAC 289065 | || | | | ||| | | | || |||||||||||||| |||| || | | ||| Sbjct 62933 TT-CCAGTACCCCTC---TGTCTCCCTACAGCATCAATTTCATCAACAAAGACAATGCAC 62988 Query 289066 GGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACA 289125 |||| ||||| | |||| || || | || | || || || || || | ||||||| Sbjct 62989 GGAGCATTTTCTTTCGCCTTTTTGAAAAGATCACGCACTCGAGAAGCACCCACACCAACA 63048 Query 289126 TACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGC 289184 |||| || |||||||| ||| | || | | || | ||| | ||| |||||| || || Sbjct 63049 AACATCTCGACAAATTCGGAACCAGA-AATCGAGAAGAACGGAACACCTGCTTCTCCAGC 63107 Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244 | ||| |||| || || ||||| || || || || || || | | ||||| || || Sbjct 63108 AATGGCCTTCGCTAGGAGGGTCTTTCCAGTCCCTGGAGGGCCGACAAGAAGAACACCTTT 63167 Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304 || | || ||| |||| || | ||||||| |||| | ||||| || | ||| Sbjct 63168 AGGAATGCGAGCTCCAACAGAAGTAAACCTCTCAGGTTTCTTAAGGAATTCGACCACTTC 63227 Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAAT 289355 | | || | |||||| |||||| || || ||||| |||| || || Sbjct 63228 CATGAAATCCTGTTTTGCTTCATCAACACCAGCAACATCGTCAAATGTTAT 63278 >seq13639 Length=40771 Score = 118 bits (130), Expect = 3e-21 Identities = 209/298 (70%), Gaps = 10/298 (3%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||| | |||| || ||||||||||||||||| || | | ||||| | || | Sbjct 21633 CTTTGTCTACCGACTGCATCAATTTCGTCAATAAACACGATGCACGGTGCCTTACTCTTT 21692 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || | |||| || || || || | | || |||| ||||| ||| ||||||||| Sbjct 21693 GCTTTCTCAAACAAGTCCCTCACTCTGCTCGCCCCAACCCCAACGAACAACTCTACAAAT 21752 Query 289141 TCAGAAGCGGAT-ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 |||||||| | || ||| ||| | ||| || || ||||| ||||| || ||||| Sbjct 21753 TCAGAAGCTGCGCACGAGAA-GAACGGCACACCAGCCTCTCCTGCCACTGCTCTTGCCAG 21811 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT-GGTACTTTTGCCC 289258 ||||||||||| || || || || ||| |||| || | |||||| || | ||||| | Sbjct 21812 CAGTGTCTTACCGGTACCTGGAGGACCCACTAACAG-GCACCCTTTCGGAATCTTTGCAC 21870 Query 289259 C---AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTC 289313 | ||||| | ||||| |||||| ||||||| || || || | ||||| ||| || Sbjct 21871 CTAGAGCAG---TGTATTTATCAGGGTTCTTTAAGAAATCGACCACTTCCTGAAGCTC 21925 >seq15487 Length=99601 Score = 109 bits (120), Expect = 2e-18 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| || ||||| | ||| ||||| || ||||| |||||| | |||| | || Sbjct 65849 GGCGATCAGCCCACAGCGCTCACAGACATGAACTCTGTATGCATCACTTTGGTCAAACAG 65908 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || |||| ||| ||| |||||||| | |||||||||||| || ||||| || || Sbjct 65909 CCTCTCCTTAAGGAAATGAGCAGCACCGTGCGCAATCATACAATCTCGTTCCATCTCTCC 65968 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 || |||||||||||||| |||| | ||||| || ||||| | || ||| | || Sbjct 65969 AAATCGAAGACCACCATCACGAGAACGTCCCTCAGCCGGCTGCCTGGTCAGAATCTGCAC 66028 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 ||||| || |||| ||| |||| ||||||||||| || | |||||| Sbjct 66029 CGGACCTCGTCCACGAGAATGTATCTTGTCATCAACCATATGCTTCAGTCTTTGGTAG 66086 >seq13599 Length=79719 Score = 105 bits (116), Expect = 2e-17 Identities = 311/471 (66%), Gaps = 14/471 (3%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT-TTGC--TTAAATCCA 288945 || ||||||||||| || || || | ||||| || | |||| |||| | ||| || Sbjct 37249 ATGTCGGCTCTGTTAGTCGCAGCGACTACAATAACAC---CGGTGTTGCCCTCAAACCCG 37193 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| || | || ||||| || || |||||||| || || || || | || Sbjct 37192 TCCATCTCAGTGAGAAGCTGATTCAGCGTCTGTTCCCTCTCGTCGTTCCCTCCACC--AA 37135 Query 289006 TCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACAC 289065 | || | | | ||| | | | || |||||||||||||| |||| || | | ||| Sbjct 37134 TT-CCAGTACCCCTC---TGTCTCCCTACAGCATCAATTTCATCAACAAAGACAATGCAC 37079 Query 289066 GGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACA 289125 |||| ||||| | |||| || || | || | || || || || || | ||||||| Sbjct 37078 GGAGCATTTTCTTTCGCCTTTTTGAAAAGATCACGCACTCGAGAGGCACCCACACCAACA 37019 Query 289126 TACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGC 289184 |||| || |||||||| ||| | || | | || | ||| | ||| |||||| || || Sbjct 37018 AACATCTCGACAAATTCGGAACCAGA-AATCGAGAAGAACGGAACACCTGCTTCTCCAGC 36960 Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244 | ||| |||| || || ||||| || || || || || || | | ||||| || || Sbjct 36959 AATGGCCTTCGCTAGGAGGGTCTTTCCAGTCCCTGGAGGGCCGACAAGAAGAACACCTTT 36900 Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304 || | || ||| |||| | | |||| || |||| | ||||| || | ||| Sbjct 36899 AGGAATGCGAGCTCCAACAGATGTGAACCTCTCGGGTTTCTTAAGGAATTCGACCACTTC 36840 Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAAT 289355 | | || | |||||| |||||| || || ||||| |||| || || Sbjct 36839 CATGAAATCCTGTTTTGCTTCATCAACACCAGCAACATCGTCAAATGTTAT 36789 >seq16192 Length=256051 Score = 96.9 bits (106), Expect = 1e-14 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923 ||||||||| ||||||||||||| ||||| | |||||| | |||||||||||| ||| Sbjct 180984 ACACCAGCATAGTGGAAAGTATTGAGAGTCATTTGAGTGGCAGGCTCACCAATAGATTGA 180925 Query 301924 GCCGCAA-TCATACCAACCATTTCTCCTGGTGCTACAATAGA 301964 || |||| ||| |||| ||||||||| || ||||| ||||| Sbjct 180924 GCAGCAACGCAT-CCAATCATTTCTCCCGGGGCTACCATAGA 180884 >seq16048 Length=246288 Score = 86.0 bits (94), Expect = 2e-11 Identities = 190/281 (68%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 133081 TATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGATTTATT 133140 ||||||||||||| | || | || ||| | ||||| || ||| ||| | || Sbjct 203935 TATGTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAAGCATCGTT 203994 Query 133141 TTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGC--CCTT-AC 133197 |||||| | ||||| ||| | || ||||| | |||||| | | |||| || Sbjct 203995 TTGGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGTCACTGGTCAACGACCTTGAC 204054 Query 133198 TGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTAT 133257 | |||||| ||||| || || || | || || ||||| || |||||| || Sbjct 204055 CGACGATGAACGCCATTTCATCACTCACGTTCTCGCCTTCTTTGCCGCATCTGATGGGAT 204114 Query 133258 TGTTCTTGAAAATTTAGGAACACGGTTTATG--GGAGAAGTTCAACTGGCCGAAGCCCGT 133315 |||||| || || | | ||||| ||| ||||| |||| || ||||||| ||| Sbjct 204115 TGTTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGA--TTCAGCTCCCCGAAGCGCGT 204172 Query 133316 GCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTC 133356 || ||||| ||| | ||||||||||| || ||||| ||||| Sbjct 204173 GCGTTTTACGGGTTTCAGATTGCGATTGAGAATATTCATTC 204213 >seq16162 Length=245457 Score = 84.2 bits (92), Expect = 6e-11 Identities = 142/205 (69%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || || ||||| ||| || || || || |||||||| | |||||| || | | Sbjct 41309 TACCTTTTCTTTTGCCTCCACCTTGGTCAACGTATCGAGCAGTGTCATTGAACACCCTAA 41250 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| || |||||||||| || || ||||| || || ||||| | ||| | || | Sbjct 41249 GCATCGGGGTAATACCATTTGAGGTTCCATTTGTACCCCGAATGTAACTACCGGTTGCAC 41190 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| ||| ||||| | ||||||||||| | |||| ||| ||| || |||| Sbjct 41189 GAATATTGTGAATCGACACACCAATACCACCAGCAGATTTGCTAATAACAGCACACTCCT 41130 Query 156226 TTACAGTATTGAAAATACCTTCAAT 156250 | | |||| | || |||||||| Sbjct 41129 TCAATGTATCATAGATTCCTTCAAT 41105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470967345690656