Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq11475 352 3e-92 seq15224 230 3e-55 seq8938 138 1e-27 seq14024 125 8e-24 seq12877 116 4e-21 seq13902 100 3e-16 >seq11475 Length=22225 Score = 352 bits (390), Expect = 3e-92 Identities = 711/1053 (68%), Gaps = 29/1053 (3%) Strand=Plus/Minus Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412 ||| ||| | ||||| || | ||||| |||||| ||||| |||||||| || | | Sbjct 12894 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAG 12835 Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 73472 | ||||||||||| || || || ||||||||||| | || | || |||||||| || Sbjct 12834 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAG 12775 Query 73473 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 73532 | || || || || || |||||||| || ||||| | || |||||| | || || Sbjct 12774 GTACGACGTTTGTAACTTCATGGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCT 12715 Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 73592 ||||| ||||| ||||| || || || |||| | || | | | || | | |||| Sbjct 12714 GCAATTTCTTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGT 12655 Query 73593 TCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 73652 | || ||||| || || |||||||| ||| || || |||| ||||||||| || || | Sbjct 12654 TGCTGTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGT 12595 Query 73653 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 73712 ||| ||||| || | ||||| | || ||||| |||||||| ||| | | || || | Sbjct 12594 GGACTTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCG 12535 Query 73713 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCG 73772 | |||| || |||| | || ||||| || ||| |||| || || | || | Sbjct 12534 AACTTGCTCGATCTGTTCAATTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTG 12475 Query 73773 CAGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCAC 73832 | || || | || ||||| ||||| |||| || | |||||||||| || | Sbjct 12474 CTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 12415 Query 73833 CTTCATTCGGTGTCGCAGCAATCTTTCGTTATAT----TTTATTCATACAGGGTTTCCAC 73888 || || ||||| ||||| || ||||| | || ||| |||| ||||||| || Sbjct 12414 CTAGTTTTGGTGTAGCAGCTATTTTTCGATTCATCCTCTTTTTTCA---AGGGTTT-CAT 12359 Query 73889 AATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTA 73948 ||| || || || || |||||||||||||| || || ||| || | || | || | Sbjct 12358 AATTGGACGCTGAACCCTTTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTG 12299 Query 73949 CTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATAC 74008 ||||| || || |||||||| || ||| | || || || | || || Sbjct 12298 CTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAGGA------------- 12252 Query 74009 ACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAG 74068 || | | | ||| |||| ||| | || || | || || || | ||||| Sbjct 12251 --TG--GTGATGGGGCAA-ATACA---TTCCGGGCTTTTAACCCAACTCAAGCTGAAGAA 12200 Query 74069 ACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCA 74128 |||||| ||| | || |||||| | || ||||| || || ||||| | || ||||| Sbjct 12199 ACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCC 12140 Query 74129 AACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCA 74188 || ||| | | ||||| ||| ||||||| || ||||| || | ||| | |||| Sbjct 12139 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 12080 Query 74189 TCTATAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAG 74248 || | || | || ||||| || | ||||| | || || ||||| || || ||||| Sbjct 12079 GCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAA 12020 Query 74249 ATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAAT 74308 ||| | ||||| ||||| || || ||||| || |||||||| || || ||||| | ||| Sbjct 12019 ATACGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAAT 11960 Query 74309 GAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCA 74368 |||||||| | || |||||| | || ||||| || ||||| ||| || | ||||| Sbjct 11959 GAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 11900 Query 74369 GAAGAAGTCTTGCCACGAGGCAACGCACTATAA 74401 || || || | || || || ||||| || ||| Sbjct 11899 GAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 11867 >seq15224 Length=172684 Score = 230 bits (254), Expect = 3e-55 Identities = 293/402 (73%), Gaps = 1/402 (0%) Strand=Plus/Plus Query 72614 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 72673 |||| || ||||| ||||| || || | || || ||| || ||| | | |||||| Sbjct 89312 TATGAGT-GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAA 89370 Query 72674 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 72733 | ||||| || || |||||||||||||| |||| || || ||||| |||||||||| Sbjct 89371 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCA 89430 Query 72734 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 72793 || | || ||||| || || |||||||| || |||||||| || || ||| ||||||| Sbjct 89431 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAG 89490 Query 72794 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTC 72853 | ||| | ||||| || || || ||||| ||||| ||||| | || ||||| | Sbjct 89491 CTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 89550 Query 72854 TAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAG 72913 | || || || || ||||| || || | || | || || | || || ||||| | Sbjct 89551 TGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGG 89610 Query 72914 AAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATG 72973 ||||||| ||||| || || |||||||||| || || ||| |||| |||||||| |||| Sbjct 89611 AAGAAACTTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATG 89670 Query 72974 CATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 73015 | |||||||| || ||||| |||||||||||| | |||| Sbjct 89671 CTAGTTTCAACAATTCCCGTTCTTTACACTTCTTCTTAGCTG 89712 Score = 111 bits (122), Expect = 2e-19 Identities = 128/173 (74%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 72901 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 72960 || || ||||| |||||||| ||||| || || ||||||||||| || || ||| |||| Sbjct 89743 TTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTG 89802 Query 72961 ATCTTC------CAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 73014 |||||| || ||||| |||||||| |||||||| |||||||||||| | ||| Sbjct 89803 ATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCT 89862 Query 73015 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGC 73067 | | || |||||| || | ||||| || | | ||||| | || ||||| Sbjct 89863 GCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGC 89915 Score = 105 bits (116), Expect = 8e-18 Identities = 129/175 (74%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 72347 CTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATG 72406 |||| || |||||| |||| || || || | ||||| ||| |||| ||| | | || | Sbjct 89140 CTGC-CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACG 89198 Query 72407 GTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCT 72466 | ||||| || || |||||||| | |||| |||| || ||||| || || || | Sbjct 89199 GAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTT 89258 Query 72467 ATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTA 72521 |||| || ||||||||||| || | || |||||||| ||||| || |||||||| Sbjct 89259 ATCCAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTA 89313 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 72280 TGGTTTGGTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCA 72339 ||||||||||| || ||||| || | | ||||| || || || ||| |||| Sbjct 88977 TGGTTTGGTGTTTTGATGATTCCTACATTATTGACTGCAACTTCTGTATTTATTATAGCC 89036 Query 72340 TTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTC 72399 ||||| |||||||| |||||| |||| || || || | ||||| ||| |||| ||| | Sbjct 89037 TTCATTGCTGCTCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTA 89096 Query 72400 TTATATGGTAACAACATCATCTCTGGTGC 72428 | || || ||||| || || |||||||| Sbjct 89097 CTTTACGGAAACAATATTATTTCTGGTGC 89125 >seq8938 Length=12132 Score = 138 bits (152), Expect = 1e-27 Identities = 223/320 (70%), Gaps = 2/320 (1%) Strand=Plus/Minus Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143 || |||||| | || ||||| || | ||||| | || ||||| || ||||| | ||| Sbjct 2038 ACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGTTA 1979 Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203 || ||| ||||||| || ||||| || | | | | |||| || | || | || Sbjct 1978 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAGTC 1919 Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAA--GAGCAGCAG 74261 ||||| || | ||||| | || || ||||| || || ||||| ||| | ||||| | Sbjct 1918 GGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGCCG 1859 Query 74262 AAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAG 74321 |||| || || ||||| || |||||||| || || ||||| | ||||||||||| | | Sbjct 1858 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTG 1799 Query 74322 CATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGC 74381 | |||||| || ||||| || ||||| ||| || | ||||| || || || | | Sbjct 1798 CTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 1739 Query 74382 CACGAGGCAACGCACTATAA 74401 | || || ||||| || ||| Sbjct 1738 CCCGTGGAAACGCTCTTTAA 1719 >seq14024 Length=49420 Score = 125 bits (138), Expect = 8e-24 Identities = 239/352 (68%), Gaps = 5/352 (1%) Strand=Plus/Plus Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412 ||| | ||| ||||| || | ||||| |||||| ||||||| |||||| || | | Sbjct 34626 AAAAAAAATTATTTGATATTATGGATGACTGGTTACGTAGAGATCATTTCGTTTTTGTAG 34685 Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGG-----TT 73467 | | ||| ||||| || || || ||||||||||| | || | || |||||| || Sbjct 34686 GTTAGTCGGGTCTATTGCTCTTTCCTTGTGCTTATTTTGCTGTAGGGGGTTGGTTTAATT 34745 Query 73468 CGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGA 73527 ||| || || || || || |||||||| || ||||| || || |||||| | || Sbjct 34746 TACAGGTACGACGTTTGTAACTTCATGGTATACTCATGGGATGGCCAGTTCATATTTGGA 34805 Query 73528 GGGAGCAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCT 73587 || ||||| ||||| ||| | || || |||| | || | | | || | | Sbjct 34806 AGGCTGCAATTTCTTAACCGCAATCGATTCTACTCCTGCTAATAGTTTAGCACACTCTTT 34865 Query 73588 ATTGTTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGG 73647 ||||| | ||||| || || |||||||| ||| || || ||| ||||||||| || Sbjct 34866 GTTGTTGTTGTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTTGGCGTCAATTAGGCGG 34925 Query 73648 ACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATG 73699 | |||| ||||| || | ||||| | || ||||| |||||| | ||| Sbjct 34926 CCAGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAGGTCTTATG 34977 >seq12877 Length=40778 Score = 116 bits (128), Expect = 4e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 74218 CCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGA 74277 |||||| || || ||||| || || ||||| ||| | ||||| ||||| || || ||||| Sbjct 745 CCTTAGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGA 804 Query 74278 AACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGT 74337 || |||||||| || || ||||| | ||||||||||| | || |||||| | || Sbjct 805 GACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCA 864 Query 74338 CGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACT 74397 ||||| || ||||| ||| || | ||||| || || || | || || || ||||| || Sbjct 865 AGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 924 Query 74398 ATAA 74401 ||| Sbjct 925 TTAA 928 >seq13902 Length=44788 Score = 100 bits (110), Expect = 3e-16 Identities = 233/350 (67%), Gaps = 10/350 (3%) Strand=Plus/Minus Query 73421 GGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACT 73480 ||||| || || || ||||||||||| | || | || |||||||| | | || || Sbjct 6444 GGTCTATTGCTCTTTCCTTGTGCTTAT-TCGCTGTAGGGGGTTGGTTTACAAGTACGACG 6386 Query 73481 TTCGTGACCTCATGGTACACACATGGTATTGCATC--------CTCATATCTTGAGGGAG 73532 || || ||||||||||| || ||||| | || | |||||| | | || Sbjct 6385 TTTGTAACCTCATGGTATACTCATGGGTTGGCCACTTGGCCAGTTCATATTTGAAAGGCT 6326 Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCA-TAGTCTATTG 73591 ||||| ||||| ||||| || || || |||| | || | | | || | | | ||| Sbjct 6325 GTAATTTCTTAACCGCAGCTGTTTCCACTCCTGCTAATAGTTTAGCACACTCTTTTGTTG 6266 Query 73592 TTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTA 73651 || || ||| | || || |||||||| ||| || || |||| ||||||||| || | Sbjct 6265 TTTCTGTGGAGTCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCCG 6206 Query 73652 TGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTT 73711 |||| ||||| | | ||||| | || |||| |||||||| ||| | | || || Sbjct 6205 TGGACTTTTGTTGATCTTCATGGTGCTTTCAGACTAATAGGTTTTATGTTACGCCAATTC 6146 Query 73712 GAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTC 73761 || |||| || |||| | || ||||| || ||| |||| || || Sbjct 6145 GAACTTGCTCGATCTGTTCAATTGCGCCCTTATAATGCAATAGCATTCTC 6096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572550728439040