Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_021559.1
Length=179063
Score E
Sequences producing significant alignments: (Bits) Value
seq11475 352 3e-92
seq15224 230 3e-55
seq8938 138 1e-27
seq14024 125 8e-24
seq12877 116 4e-21
seq13902 100 3e-16
>seq11475
Length=22225
Score = 352 bits (390), Expect = 3e-92
Identities = 711/1053 (68%), Gaps = 29/1053 (3%)
Strand=Plus/Minus
Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412
||| ||| | ||||| || | ||||| |||||| ||||| |||||||| || | |
Sbjct 12894 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAG 12835
Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 73472
| ||||||||||| || || || ||||||||||| | || | || |||||||| ||
Sbjct 12834 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAG 12775
Query 73473 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 73532
| || || || || || |||||||| || ||||| | || |||||| | || ||
Sbjct 12774 GTACGACGTTTGTAACTTCATGGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCT 12715
Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 73592
||||| ||||| ||||| || || || |||| | || | | | || | | ||||
Sbjct 12714 GCAATTTCTTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGT 12655
Query 73593 TCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 73652
| || ||||| || || |||||||| ||| || || |||| ||||||||| || || |
Sbjct 12654 TGCTGTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGT 12595
Query 73653 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 73712
||| ||||| || | ||||| | || ||||| |||||||| ||| | | || || |
Sbjct 12594 GGACTTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCG 12535
Query 73713 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCG 73772
| |||| || |||| | || ||||| || ||| |||| || || | || |
Sbjct 12534 AACTTGCTCGATCTGTTCAATTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTG 12475
Query 73773 CAGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCAC 73832
| || || | || ||||| ||||| |||| || | |||||||||| || |
Sbjct 12474 CTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 12415
Query 73833 CTTCATTCGGTGTCGCAGCAATCTTTCGTTATAT----TTTATTCATACAGGGTTTCCAC 73888
|| || ||||| ||||| || ||||| | || ||| |||| ||||||| ||
Sbjct 12414 CTAGTTTTGGTGTAGCAGCTATTTTTCGATTCATCCTCTTTTTTCA---AGGGTTT-CAT 12359
Query 73889 AATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTA 73948
||| || || || || |||||||||||||| || || ||| || | || | || |
Sbjct 12358 AATTGGACGCTGAACCCTTTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTG 12299
Query 73949 CTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATAC 74008
||||| || || |||||||| || ||| | || || || | || ||
Sbjct 12298 CTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAGGA------------- 12252
Query 74009 ACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAG 74068
|| | | | ||| |||| ||| | || || | || || || | |||||
Sbjct 12251 --TG--GTGATGGGGCAA-ATACA---TTCCGGGCTTTTAACCCAACTCAAGCTGAAGAA 12200
Query 74069 ACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCA 74128
|||||| ||| | || |||||| | || ||||| || || ||||| | || |||||
Sbjct 12199 ACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCC 12140
Query 74129 AACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCA 74188
|| ||| | | ||||| ||| ||||||| || ||||| || | ||| | ||||
Sbjct 12139 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 12080
Query 74189 TCTATAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAG 74248
|| | || | || ||||| || | ||||| | || || ||||| || || |||||
Sbjct 12079 GCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAA 12020
Query 74249 ATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAAT 74308
||| | ||||| ||||| || || ||||| || |||||||| || || ||||| | |||
Sbjct 12019 ATACGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAAT 11960
Query 74309 GAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCA 74368
|||||||| | || |||||| | || ||||| || ||||| ||| || | |||||
Sbjct 11959 GAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 11900
Query 74369 GAAGAAGTCTTGCCACGAGGCAACGCACTATAA 74401
|| || || | || || || ||||| || |||
Sbjct 11899 GAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 11867
>seq15224
Length=172684
Score = 230 bits (254), Expect = 3e-55
Identities = 293/402 (73%), Gaps = 1/402 (0%)
Strand=Plus/Plus
Query 72614 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 72673
|||| || ||||| ||||| || || | || || ||| || ||| | | ||||||
Sbjct 89312 TATGAGT-GCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAA 89370
Query 72674 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 72733
| ||||| || || |||||||||||||| |||| || || ||||| ||||||||||
Sbjct 89371 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCA 89430
Query 72734 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 72793
|| | || ||||| || || |||||||| || |||||||| || || ||| |||||||
Sbjct 89431 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAG 89490
Query 72794 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTC 72853
| ||| | ||||| || || || ||||| ||||| ||||| | || ||||| |
Sbjct 89491 CTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 89550
Query 72854 TAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAG 72913
| || || || || ||||| || || | || | || || | || || ||||| |
Sbjct 89551 TGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGG 89610
Query 72914 AAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATG 72973
||||||| ||||| || || |||||||||| || || ||| |||| |||||||| ||||
Sbjct 89611 AAGAAACTTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATG 89670
Query 72974 CATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 73015
| |||||||| || ||||| |||||||||||| | ||||
Sbjct 89671 CTAGTTTCAACAATTCCCGTTCTTTACACTTCTTCTTAGCTG 89712
Score = 111 bits (122), Expect = 2e-19
Identities = 128/173 (74%), Gaps = 6/173 (3%)
Strand=Plus/Plus
Query 72901 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 72960
|| || ||||| |||||||| ||||| || || ||||||||||| || || ||| ||||
Sbjct 89743 TTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGTCGATTG 89802
Query 72961 ATCTTC------CAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 73014
|||||| || ||||| |||||||| |||||||| |||||||||||| | |||
Sbjct 89803 ATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCT 89862
Query 73015 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGC 73067
| | || |||||| || | ||||| || | | ||||| | || |||||
Sbjct 89863 GCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGC 89915
Score = 105 bits (116), Expect = 8e-18
Identities = 129/175 (74%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 72347 CTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATG 72406
|||| || |||||| |||| || || || | ||||| ||| |||| ||| | | || |
Sbjct 89140 CTGC-CCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACG 89198
Query 72407 GTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCT 72466
| ||||| || || |||||||| | |||| |||| || ||||| || || || |
Sbjct 89199 GAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTT 89258
Query 72467 ATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTA 72521
|||| || ||||||||||| || | || |||||||| ||||| || ||||||||
Sbjct 89259 ATCCAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTA 89313
Score = 84.2 bits (92), Expect = 3e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 72280 TGGTTTGGTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCA 72339
||||||||||| || ||||| || | | ||||| || || || ||| ||||
Sbjct 88977 TGGTTTGGTGTTTTGATGATTCCTACATTATTGACTGCAACTTCTGTATTTATTATAGCC 89036
Query 72340 TTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTC 72399
||||| |||||||| |||||| |||| || || || | ||||| ||| |||| ||| |
Sbjct 89037 TTCATTGCTGCTCCGCCAGTCAATATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTA 89096
Query 72400 TTATATGGTAACAACATCATCTCTGGTGC 72428
| || || ||||| || || ||||||||
Sbjct 89097 CTTTACGGAAACAATATTATTTCTGGTGC 89125
>seq8938
Length=12132
Score = 138 bits (152), Expect = 1e-27
Identities = 223/320 (70%), Gaps = 2/320 (1%)
Strand=Plus/Minus
Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143
|| |||||| | || ||||| || | ||||| | || ||||| || ||||| | |||
Sbjct 2038 ACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGTTA 1979
Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203
|| ||| ||||||| || ||||| || | | | | |||| || | || | ||
Sbjct 1978 CATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAGTC 1919
Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAA--GAGCAGCAG 74261
||||| || | ||||| | || || ||||| || || ||||| ||| | ||||| |
Sbjct 1918 GGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGCCG 1859
Query 74262 AAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAG 74321
|||| || || ||||| || |||||||| || || ||||| | ||||||||||| | |
Sbjct 1858 AAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTG 1799
Query 74322 CATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGC 74381
| |||||| || ||||| || ||||| ||| || | ||||| || || || | |
Sbjct 1798 CTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 1739
Query 74382 CACGAGGCAACGCACTATAA 74401
| || || ||||| || |||
Sbjct 1738 CCCGTGGAAACGCTCTTTAA 1719
>seq14024
Length=49420
Score = 125 bits (138), Expect = 8e-24
Identities = 239/352 (68%), Gaps = 5/352 (1%)
Strand=Plus/Plus
Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412
||| | ||| ||||| || | ||||| |||||| ||||||| |||||| || | |
Sbjct 34626 AAAAAAAATTATTTGATATTATGGATGACTGGTTACGTAGAGATCATTTCGTTTTTGTAG 34685
Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGG-----TT 73467
| | ||| ||||| || || || ||||||||||| | || | || |||||| ||
Sbjct 34686 GTTAGTCGGGTCTATTGCTCTTTCCTTGTGCTTATTTTGCTGTAGGGGGTTGGTTTAATT 34745
Query 73468 CGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGA 73527
||| || || || || || |||||||| || ||||| || || |||||| | ||
Sbjct 34746 TACAGGTACGACGTTTGTAACTTCATGGTATACTCATGGGATGGCCAGTTCATATTTGGA 34805
Query 73528 GGGAGCAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCT 73587
|| ||||| ||||| ||| | || || |||| | || | | | || | |
Sbjct 34806 AGGCTGCAATTTCTTAACCGCAATCGATTCTACTCCTGCTAATAGTTTAGCACACTCTTT 34865
Query 73588 ATTGTTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGG 73647
||||| | ||||| || || |||||||| ||| || || ||| ||||||||| ||
Sbjct 34866 GTTGTTGTTGTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTTGGCGTCAATTAGGCGG 34925
Query 73648 ACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATG 73699
| |||| ||||| || | ||||| | || ||||| |||||| | |||
Sbjct 34926 CCAGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAGGTCTTATG 34977
>seq12877
Length=40778
Score = 116 bits (128), Expect = 4e-21
Identities = 136/184 (74%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 74218 CCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGA 74277
|||||| || || ||||| || || ||||| ||| | ||||| ||||| || || |||||
Sbjct 745 CCTTAGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGA 804
Query 74278 AACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGT 74337
|| |||||||| || || ||||| | ||||||||||| | || |||||| | ||
Sbjct 805 GACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCA 864
Query 74338 CGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACT 74397
||||| || ||||| ||| || | ||||| || || || | || || || ||||| ||
Sbjct 865 AGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 924
Query 74398 ATAA 74401
|||
Sbjct 925 TTAA 928
>seq13902
Length=44788
Score = 100 bits (110), Expect = 3e-16
Identities = 233/350 (67%), Gaps = 10/350 (3%)
Strand=Plus/Minus
Query 73421 GGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACT 73480
||||| || || || ||||||||||| | || | || |||||||| | | || ||
Sbjct 6444 GGTCTATTGCTCTTTCCTTGTGCTTAT-TCGCTGTAGGGGGTTGGTTTACAAGTACGACG 6386
Query 73481 TTCGTGACCTCATGGTACACACATGGTATTGCATC--------CTCATATCTTGAGGGAG 73532
|| || ||||||||||| || ||||| | || | |||||| | | ||
Sbjct 6385 TTTGTAACCTCATGGTATACTCATGGGTTGGCCACTTGGCCAGTTCATATTTGAAAGGCT 6326
Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCA-TAGTCTATTG 73591
||||| ||||| ||||| || || || |||| | || | | | || | | | |||
Sbjct 6325 GTAATTTCTTAACCGCAGCTGTTTCCACTCCTGCTAATAGTTTAGCACACTCTTTTGTTG 6266
Query 73592 TTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTA 73651
|| || ||| | || || |||||||| ||| || || |||| ||||||||| || |
Sbjct 6265 TTTCTGTGGAGTCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCCG 6206
Query 73652 TGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTT 73711
|||| ||||| | | ||||| | || |||| |||||||| ||| | | || ||
Sbjct 6205 TGGACTTTTGTTGATCTTCATGGTGCTTTCAGACTAATAGGTTTTATGTTACGCCAATTC 6146
Query 73712 GAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTC 73761
|| |||| || |||| | || ||||| || ||| |||| || ||
Sbjct 6145 GAACTTGCTCGATCTGTTCAATTGCGCCCTTATAATGCAATAGCATTCTC 6096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572550728439040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |