Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq16048 107 2e-17 seq15946 102 1e-15 seq11586 102 1e-15 >seq16048 Length=246288 Score = 107 bits (118), Expect = 2e-17 Identities = 210/304 (69%), Gaps = 15/304 (5%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| || || ||||| || || ||||| || |||||||| || | | | || | | | Sbjct 204215 CCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAGCT 204156 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | | ||||||||||||||| | || ||||||||| || || || || ||||| | Sbjct 204155 GAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGCAA 204096 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCT---GAGCGACACCCAGT 869807 | || || || ||||| |||| || ||||| || |||||| | | || ||||| Sbjct 204095 AGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTCAAGGTCGTTGACCAGT 204036 Query 869808 GGACG---GTGTCGGCGCTG--AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGC 869862 |||| || | | || || || || || || || ||||| | ||| || ||||| Sbjct 204035 -GACGTAAGTCTTG----TGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGC 203981 Query 869863 CTTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGG 869921 || |||||||| ||||| | |||| |||| | || ||||| | ||| || |||| | Sbjct 203980 TTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACA-TACAGAAACGGTCCG 203922 Query 869922 GGTT 869925 |||| Sbjct 203921 GGTT 203918 Score = 91.5 bits (100), Expect = 2e-12 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| || || ||||| || |||||||| || ||||||||||| || || || || Sbjct 204453 CCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAAT 204394 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || |||||||| ||||| |||| | || ||| ||||| || || || || Sbjct 204393 ATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTC-AGAACC-----A 204340 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | ||||| || |||||| || ||||| ||| |||||| || | ||| |||| || Sbjct 204339 TCAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCA 204280 Query 869399 CGAAA 869403 ||||| Sbjct 204279 CGAAA 204275 >seq15946 Length=172941 Score = 102 bits (112), Expect = 1e-15 Identities = 209/304 (69%), Gaps = 15/304 (5%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| || || ||||| || || ||||| || |||||||| || | | | || | | | Sbjct 58280 CCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAGCT 58221 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | | ||||||||||||||| | || ||||||||| || || || || ||||| | Sbjct 58220 GAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGCAA 58161 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCT---GAGCGACACCCAGT 869807 | || || || ||||| |||| || ||||| || | |||| | | || ||||| Sbjct 58160 AGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACCAGT 58101 Query 869808 GGACG---GTGTCGGCGCTG--AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGC 869862 |||| || | | || || || || || || || ||||| | ||| || ||||| Sbjct 58100 -GACGTAAGTCTTG----TGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGC 58046 Query 869863 CTTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGG 869921 || |||||||| ||||| | |||| |||| | || ||||| | ||| || |||| | Sbjct 58045 TTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACA-TACAGAAACGGTCCG 57987 Query 869922 GGTT 869925 |||| Sbjct 57986 GGTT 57983 Score = 91.5 bits (100), Expect = 2e-12 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| || || ||||| || |||||||| || ||||||||||| || || || || Sbjct 58518 CCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAAT 58459 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || |||||||| ||||| |||| | || ||| ||||| || || || || Sbjct 58458 ATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTC-AGAACC-----A 58405 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | ||||| || |||||| || ||||| ||| |||||| || | ||| |||| || Sbjct 58404 TCAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCA 58345 Query 869399 CGAAA 869403 ||||| Sbjct 58344 CGAAA 58340 >seq11586 Length=26096 Score = 102 bits (112), Expect = 1e-15 Identities = 209/304 (69%), Gaps = 15/304 (5%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| || || ||||| || || ||||| || |||||||| || | | | || | | | Sbjct 4038 CCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAGCT 3979 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | | ||||||||||||||| | || ||||||||| || || || || ||||| | Sbjct 3978 GAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGCAA 3919 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCT---GAGCGACACCCAGT 869807 | || || || ||||| |||| || ||||| || | |||| | | || ||||| Sbjct 3918 AGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACCAGT 3859 Query 869808 GGACG---GTGTCGGCGCTG--AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGC 869862 |||| || | | || || || || || || || ||||| | ||| || ||||| Sbjct 3858 -GACGTAAGTCTTG----TGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGC 3804 Query 869863 CTTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGG 869921 || |||||||| ||||| | |||| |||| | || ||||| | ||| || |||| | Sbjct 3803 TTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACA-TACAGAAACGGTCCG 3745 Query 869922 GGTT 869925 |||| Sbjct 3744 GGTT 3741 Score = 91.5 bits (100), Expect = 2e-12 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| || || ||||| || |||||||| || ||||||||||| || || || || Sbjct 4276 CCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAAT 4217 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || |||||||| ||||| |||| | || ||| ||||| || || || || Sbjct 4216 ATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTC-AGAACC-----A 4163 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | ||||| || |||||| || ||||| ||| |||||| || | ||| |||| || Sbjct 4162 TCAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCA 4103 Query 869399 CGAAA 869403 ||||| Sbjct 4102 CGAAA 4098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103439067572896