Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 107 2e-17
seq15946 102 1e-15
seq11586 102 1e-15
>seq16048
Length=246288
Score = 107 bits (118), Expect = 2e-17
Identities = 210/304 (69%), Gaps = 15/304 (5%)
Strand=Plus/Minus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
|||| || || ||||| || || ||||| || |||||||| || | | | || | | |
Sbjct 204215 CCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAGCT 204156
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
| | ||||||||||||||| | || ||||||||| || || || || ||||| |
Sbjct 204155 GAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGCAA 204096
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCT---GAGCGACACCCAGT 869807
| || || || ||||| |||| || ||||| || |||||| | | || |||||
Sbjct 204095 AGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATCGTCGGTCAAGGTCGTTGACCAGT 204036
Query 869808 GGACG---GTGTCGGCGCTG--AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGC 869862
|||| || | | || || || || || || || ||||| | ||| || |||||
Sbjct 204035 -GACGTAAGTCTTG----TGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGC 203981
Query 869863 CTTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGG 869921
|| |||||||| ||||| | |||| |||| | || ||||| | ||| || |||| |
Sbjct 203980 TTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACA-TACAGAAACGGTCCG 203922
Query 869922 GGTT 869925
||||
Sbjct 203921 GGTT 203918
Score = 91.5 bits (100), Expect = 2e-12
Identities = 132/185 (71%), Gaps = 6/185 (3%)
Strand=Plus/Minus
Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278
|| ||||| || || ||||| || |||||||| || ||||||||||| || || || ||
Sbjct 204453 CCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAAT 204394
Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338
|| |||||||| ||||| |||| | || ||| ||||| || || || ||
Sbjct 204393 ATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTC-AGAACC-----A 204340
Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398
| ||||| || |||||| || ||||| ||| |||||| || | ||| |||| ||
Sbjct 204339 TCAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCA 204280
Query 869399 CGAAA 869403
|||||
Sbjct 204279 CGAAA 204275
>seq15946
Length=172941
Score = 102 bits (112), Expect = 1e-15
Identities = 209/304 (69%), Gaps = 15/304 (5%)
Strand=Plus/Minus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
|||| || || ||||| || || ||||| || |||||||| || | | | || | | |
Sbjct 58280 CCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAGCT 58221
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
| | ||||||||||||||| | || ||||||||| || || || || ||||| |
Sbjct 58220 GAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGCAA 58161
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCT---GAGCGACACCCAGT 869807
| || || || ||||| |||| || ||||| || | |||| | | || |||||
Sbjct 58160 AGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACCAGT 58101
Query 869808 GGACG---GTGTCGGCGCTG--AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGC 869862
|||| || | | || || || || || || || ||||| | ||| || |||||
Sbjct 58100 -GACGTAAGTCTTG----TGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGC 58046
Query 869863 CTTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGG 869921
|| |||||||| ||||| | |||| |||| | || ||||| | ||| || |||| |
Sbjct 58045 TTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACA-TACAGAAACGGTCCG 57987
Query 869922 GGTT 869925
||||
Sbjct 57986 GGTT 57983
Score = 91.5 bits (100), Expect = 2e-12
Identities = 132/185 (71%), Gaps = 6/185 (3%)
Strand=Plus/Minus
Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278
|| ||||| || || ||||| || |||||||| || ||||||||||| || || || ||
Sbjct 58518 CCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAAT 58459
Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338
|| |||||||| ||||| |||| | || ||| ||||| || || || ||
Sbjct 58458 ATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTC-AGAACC-----A 58405
Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398
| ||||| || |||||| || ||||| ||| |||||| || | ||| |||| ||
Sbjct 58404 TCAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCA 58345
Query 869399 CGAAA 869403
|||||
Sbjct 58344 CGAAA 58340
>seq11586
Length=26096
Score = 102 bits (112), Expect = 1e-15
Identities = 209/304 (69%), Gaps = 15/304 (5%)
Strand=Plus/Minus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
|||| || || ||||| || || ||||| || |||||||| || | | | || | | |
Sbjct 4038 CCGAATGAATATTCTCAATCGCAATCTGAAACCCGTAAAACGCACGCGCTTCGGGGAGCT 3979
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
| | ||||||||||||||| | || ||||||||| || || || || ||||| |
Sbjct 3978 GAATCTCCTTCATGAACCGACACGCGAGGTTCTCGAGAACAATCCCATCAGATGCGGCAA 3919
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCT---GAGCGACACCCAGT 869807
| || || || ||||| |||| || ||||| || | |||| | | || |||||
Sbjct 3918 AGAAGGCGAGAACGTGAGTGATGAAATGGCGTTCATTGTCGGTCAAGGTCGTTGACCAGT 3859
Query 869808 GGACG---GTGTCGGCGCTG--AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGC 869862
|||| || | | || || || || || || || ||||| | ||| || |||||
Sbjct 3858 -GACGTAAGTCTTG----TGAAAGATCGACTTCTTCAGCCGTCCAAAACGATGCTTCGGC 3804
Query 869863 CTTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGG 869921
|| |||||||| ||||| | |||| |||| | || ||||| | ||| || |||| |
Sbjct 3803 TTTCTTGTACATTTCCCAGATTTGCGGGTAATGAATTGGGAACA-TACAGAAACGGTCCG 3745
Query 869922 GGTT 869925
||||
Sbjct 3744 GGTT 3741
Score = 91.5 bits (100), Expect = 2e-12
Identities = 132/185 (71%), Gaps = 6/185 (3%)
Strand=Plus/Minus
Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278
|| ||||| || || ||||| || |||||||| || ||||||||||| || || || ||
Sbjct 4276 CCCGGCATAAGTCCACGCTTTTTAAGCCAAAAAATCGCGCAGAAACTCCCAGAAAAGAAT 4217
Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338
|| |||||||| ||||| |||| | || ||| ||||| || || || ||
Sbjct 4216 ATCCCCTCGACACACGCAAAAGCGATAATCCTCTCAGCAAACGTCTC-AGAACC-----A 4163
Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398
| ||||| || |||||| || ||||| ||| |||||| || | ||| |||| ||
Sbjct 4162 TCAATCCAACGCAACGCCCAATCCGCCTTCTTCTTCACCGCAGGAATCGTCTCGACAGCA 4103
Query 869399 CGAAA 869403
|||||
Sbjct 4102 CGAAA 4098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6103439067572896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |