Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq15394 113 4e-20 seq16084 96.9 3e-15 seq15600 86.0 5e-12 seq13853 86.0 5e-12 seq15779 84.2 2e-11 seq14446 84.2 2e-11 >seq15394 Length=94532 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| |||| || ||||| || ||| | ||| || | Sbjct 44168 ATGCAGATCTTCGTGAAAACCCTAACTGGGAAAACAATAACCCTAGAAGTCGAATCATCG 44227 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | | ||| ||||||| || || || || | || | ||||||| Sbjct 44228 GACACAATCGACAATTTGAAATCGAAGATTCAAGAGAAGGAGGGGATTCCAGCGGATCAA 44287 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | || || |||||||| || |||| | ||||||||||||| |||||| Sbjct 44288 CAAAGGCTAATCTTCGCTGGAAAACAGCTCGAAGATGGCCGAACAATGGCGGACTACAAC 44347 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || ||||| ||| | ||| |||| ||| |||| || || || Sbjct 44348 ATCCAGAAGGAATCGACGCTTCACTTGGTTTTACGACTCCGTGGAGG 44394 >seq16084 Length=201933 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| |||||||| ||||| || || || || || ||| | || ||| || Sbjct 158 ATGCAAATCTTTGTCAAGACTTTGACGGGAAAGACGATCACCCTAGAGGTAGAGAACTCT 217 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | ||||| ||||| || || || || | || || Sbjct 218 GAC---ACGATCGACAACGTAAAGTCTAAGATCCAGGATAAGGAGGGGATTCCACCAGAC 274 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | || |||| |||||| |||||||| || |||| ||||| | || || ||| Sbjct 275 CAACAACGGCTAATTTTTGCGGGAAAACAGCTCGAAGATGGACGAACACTAGCCGACTAC 334 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||||||||| ||||| ||| | ||| ||||||| Sbjct 335 AACATTCAAAAGGAATCAACGCTTCACTTGGTGTT 369 >seq15600 Length=115454 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||||||||| |||| ||||| ||||| || |||| ||| | Sbjct 103051 ATGCAAATCTTTGTCAAAACCCTAACTGGCAAGACCATGACTCTCGATGTCGAGAGCTCC 103110 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| || || ||||| | ||| ||||| Sbjct 103111 GACACAATCGACAATGTCAAGACGAAGATCCAAGAGAAGGAAGGGATCCCCACAGATCAG 103170 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | ||| || |||||||| ||||||| | ||| |||| || |||||| Sbjct 103171 CAACGTCTAATCTTTGCAGGAAAACAGCTCGAGGATGGTCGTACATTGGCTGACTACAAC 103230 Query 110453 ATTCAAAAAGAATCTAC 110469 |||| || || || || Sbjct 103231 GTTCAGAAGGAGTCCAC 103247 >seq13853 Length=43806 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 |||||||| || || ||||| |||||||||| || || || | ||| || || || Sbjct 18650 ATGCAAATCTTCGTGAAAACCCTAACCGGCAAGACAATCACTCTAGAAGTCGAAAGCTCT 18709 Query 110330 GACGATACTGTCGGCCAGGT-AAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 ||| || ||| | | || |||||| || || ||||| ||||| | ||| ||| Sbjct 18710 GAC---ACGATCGACAATGTCAAAACAAAA-ATCCAAGACAAGGAAGGAATTCCCCCGGA 18765 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 || ||| | || || | ||| ||||||||||| || || | | | || |||| ||||| Sbjct 18766 CCAGCAACGTCTGATCTTTGCTGGTAAACAGCTTGAAGACGGCCGTACTTTGGCTGATTA 18825 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| ||||| || || || | ||| |||| Sbjct 18826 CAACATCCAAAAGGAGTCGACCCTTCACTTGGT 18858 >seq15779 Length=145502 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| ||||||||||| ||||| || | || || | | Sbjct 121700 ATGCAAATCTTCGTCAAAACCTTAACCGGCAAGACCATCACTCTTGAGGTCGAAAGTTCC 121759 Query 110333 GATACTGTCGGCCAGGT-AAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| ||| | | || || ||| ||||| ||||| ||||| | ||| || || Sbjct 121760 GACACTATCGACAATGTCAAGACA-AAGATCCAAGACAAGGAAGGGATCCCCCCAGACCA 121818 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| || || | ||| || |||||||| || || | | || | || || ||||| Sbjct 121819 GCAAAGGCTGATCTTTGCTGGCAAACAGCTTGAAGACGGTCGCACCCTAGCTGACTACAA 121878 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| || || || || | ||| |||| Sbjct 121879 CATTCAGAAGGAGTCGACTCTTCACTTGGT 121908 >seq14446 Length=62709 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || |||||||| || |||||||||||| |||| ||| | Sbjct 48042 ATGCAGATTTTCGTGAAGACTTTAACTGGGAAAACCATTACCCTCGAGGTCGAGAGCAGC 47983 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||| || || |||||| | || || || Sbjct 47982 GACACCATCGACAATGTCAAGACTAAGATCCAAGATAAGGAAGGCATCCCACCTGACCAG 47923 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| | |||||||| ||||||| | | || |||| || |||||| Sbjct 47922 CAGAGGCTGATCTTTGCCTGGAAACAGCTCGAGGATGGCCGTACTTTGGCTGACTACAAC 47863 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || ||||| || | ||| |||| Sbjct 47862 ATTCAGAAGGAATCCACCCTTCACTTGGT 47834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412614739412384