Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq15394 113 4e-20
seq16084 96.9 3e-15
seq15600 86.0 5e-12
seq13853 86.0 5e-12
seq15779 84.2 2e-11
seq14446 84.2 2e-11
>seq15394
Length=94532
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || || ||||| |||| || ||||| || ||| | ||| || |
Sbjct 44168 ATGCAGATCTTCGTGAAAACCCTAACTGGGAAAACAATAACCCTAGAAGTCGAATCATCG 44227
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | | | ||| ||||||| || || || || | || | |||||||
Sbjct 44228 GACACAATCGACAATTTGAAATCGAAGATTCAAGAGAAGGAGGGGATTCCAGCGGATCAA 44287
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||||| || || | || || |||||||| || |||| | ||||||||||||| ||||||
Sbjct 44288 CAAAGGCTAATCTTCGCTGGAAAACAGCTCGAAGATGGCCGAACAATGGCGGACTACAAC 44347
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || ||||| ||| | ||| |||| ||| |||| || || ||
Sbjct 44348 ATCCAGAAGGAATCGACGCTTCACTTGGTTTTACGACTCCGTGGAGG 44394
>seq16084
Length=201933
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329
|||||||| |||||||| ||||| || || || || || ||| | || ||| ||
Sbjct 158 ATGCAAATCTTTGTCAAGACTTTGACGGGAAAGACGATCACCCTAGAGGTAGAGAACTCT 217
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || ||| | | ||||| ||||| || || || || | || ||
Sbjct 218 GAC---ACGATCGACAACGTAAAGTCTAAGATCCAGGATAAGGAGGGGATTCCACCAGAC 274
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|||||| | || |||| |||||| |||||||| || |||| ||||| | || || |||
Sbjct 275 CAACAACGGCTAATTTTTGCGGGAAAACAGCTCGAAGATGGACGAACACTAGCCGACTAC 334
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
||||||||||| ||||| ||| | ||| |||||||
Sbjct 335 AACATTCAAAAGGAATCAACGCTTCACTTGGTGTT 369
>seq15600
Length=115454
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| ||||||||||| |||| ||||| ||||| || |||| ||| |
Sbjct 103051 ATGCAAATCTTTGTCAAAACCCTAACTGGCAAGACCATGACTCTCGATGTCGAGAGCTCC 103110
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | | || || |||||| || || ||||| | ||| |||||
Sbjct 103111 GACACAATCGACAATGTCAAGACGAAGATCCAAGAGAAGGAAGGGATCCCCACAGATCAG 103170
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | || || | ||| || |||||||| ||||||| | ||| |||| || ||||||
Sbjct 103171 CAACGTCTAATCTTTGCAGGAAAACAGCTCGAGGATGGTCGTACATTGGCTGACTACAAC 103230
Query 110453 ATTCAAAAAGAATCTAC 110469
|||| || || || ||
Sbjct 103231 GTTCAGAAGGAGTCCAC 103247
>seq13853
Length=43806
Score = 86.0 bits (94), Expect = 5e-12
Identities = 150/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329
|||||||| || || ||||| |||||||||| || || || | ||| || || ||
Sbjct 18650 ATGCAAATCTTCGTGAAAACCCTAACCGGCAAGACAATCACTCTAGAAGTCGAAAGCTCT 18709
Query 110330 GACGATACTGTCGGCCAGGT-AAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388
||| || ||| | | || |||||| || || ||||| ||||| | ||| |||
Sbjct 18710 GAC---ACGATCGACAATGTCAAAACAAAA-ATCCAAGACAAGGAAGGAATTCCCCCGGA 18765
Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448
|| ||| | || || | ||| ||||||||||| || || | | | || |||| |||||
Sbjct 18766 CCAGCAACGTCTGATCTTTGCTGGTAAACAGCTTGAAGACGGCCGTACTTTGGCTGATTA 18825
Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGT 110481
|||||| ||||| || || || | ||| ||||
Sbjct 18826 CAACATCCAAAAGGAGTCGACCCTTCACTTGGT 18858
>seq15779
Length=145502
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || |||||||| ||||||||||| ||||| || | || || | |
Sbjct 121700 ATGCAAATCTTCGTCAAAACCTTAACCGGCAAGACCATCACTCTTGAGGTCGAAAGTTCC 121759
Query 110333 GATACTGTCGGCCAGGT-AAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
|| ||| ||| | | || || ||| ||||| ||||| ||||| | ||| || ||
Sbjct 121760 GACACTATCGACAATGTCAAGACA-AAGATCCAAGACAAGGAAGGGATCCCCCCAGACCA 121818
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
||||| || || | ||| || |||||||| || || | | || | || || |||||
Sbjct 121819 GCAAAGGCTGATCTTTGCTGGCAAACAGCTTGAAGACGGTCGCACCCTAGCTGACTACAA 121878
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481
|||||| || || || || | ||| ||||
Sbjct 121879 CATTCAGAAGGAGTCGACTCTTCACTTGGT 121908
>seq14446
Length=62709
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || || || |||||||| || |||||||||||| |||| ||| |
Sbjct 48042 ATGCAGATTTTCGTGAAGACTTTAACTGGGAAAACCATTACCCTCGAGGTCGAGAGCAGC 47983
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | | || || ||||| || || |||||| | || || ||
Sbjct 47982 GACACCATCGACAATGTCAAGACTAAGATCCAAGATAAGGAAGGCATCCCACCTGACCAG 47923
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| || || || | ||| | |||||||| ||||||| | | || |||| || ||||||
Sbjct 47922 CAGAGGCTGATCTTTGCCTGGAAACAGCTCGAGGATGGCCGTACTTTGGCTGACTACAAC 47863
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481
||||| || ||||| || | ||| ||||
Sbjct 47862 ATTCAGAAGGAATCCACCCTTCACTTGGT 47834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412614739412384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |