Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq16048 87.8 3e-11
seq15946 87.8 3e-11
seq11586 87.8 3e-11
>seq16048
Length=246288
Score = 87.8 bits (96), Expect = 3e-11
Identities = 164/237 (69%), Gaps = 8/237 (3%)
Strand=Plus/Minus
Query 793899 GCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 793958
||||| |||||| || || ||| ||| || ||||| ||||| |||| | ||| |||
Sbjct 204807 GCCTTCTGATACTCCCCGACACGCTTCTCAAAGAAGTTTGTCTTCCCCTGCAACGAAATC 204748
Query 793959 AACTCCATCCACGGGAACGGGTTGGCCGTCA---GGTAGTGCTTCTCGCACCCGAGCG-A 794014
||||||||||| |||||||| ||||| || | |||| | || || |||| |
Sbjct 204747 AACTCCATCCAATCAAACGGGTT---CGTCACACCATACTCCTTCCCACAACCAAGCGCA 204691
Query 794015 CGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCC 794074
| ||| || | ||| || || || || ||||| | | ||| | | ||||||| ||
Sbjct 204690 CCCAA-CAACCTGTCTGCCACAAACTCGATGTAGCGACTCATTAAATCCCCGTTCATCCC 204632
Query 794075 GATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131
| | ||| ||| |||| || | ||||||||| |||| ||||| || |||||
Sbjct 204631 AACTAACGCGCAGGGGAGCGCGTCACAGACAAACTCCCTCTCAATCTCCACCGCCTC 204575
>seq15946
Length=172941
Score = 87.8 bits (96), Expect = 3e-11
Identities = 164/237 (69%), Gaps = 8/237 (3%)
Strand=Plus/Minus
Query 793899 GCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 793958
||||| |||||| || || ||| ||| || ||||| ||||| |||| | ||| |||
Sbjct 58872 GCCTTCTGATACTCCCCGACACGCTTCTCAAAGAAGTTTGTCTTCCCCTGCAACGAAATC 58813
Query 793959 AACTCCATCCACGGGAACGGGTTGGCCGTCA---GGTAGTGCTTCTCGCACCCGAGCG-A 794014
||||||||||| |||||||| ||||| || | |||| | || || |||| |
Sbjct 58812 AACTCCATCCAATCAAACGGGTT---CGTCACACCATACTCCTTCCCACAACCAAGCGCA 58756
Query 794015 CGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCC 794074
| ||| || | ||| || || || || ||||| | | ||| | | ||||||| ||
Sbjct 58755 CCCAA-CAACCTGTCTGCCACAAACTCGATGTAGCGACTCATTAAATCCCCGTTCATCCC 58697
Query 794075 GATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131
| | ||| ||| |||| || | ||||||||| |||| ||||| || |||||
Sbjct 58696 AACTAACGCGCAGGGGAGCGCGTCACAGACAAACTCCCTCTCAATCTCCACCGCCTC 58640
>seq11586
Length=26096
Score = 87.8 bits (96), Expect = 3e-11
Identities = 164/237 (69%), Gaps = 8/237 (3%)
Strand=Plus/Minus
Query 793899 GCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 793958
||||| |||||| || || ||| ||| || ||||| ||||| |||| | ||| |||
Sbjct 4630 GCCTTCTGATACTCCCCGACACGCTTCTCAAAGAAGTTTGTCTTCCCCTGCAACGAAATC 4571
Query 793959 AACTCCATCCACGGGAACGGGTTGGCCGTCA---GGTAGTGCTTCTCGCACCCGAGCG-A 794014
||||||||||| |||||||| ||||| || | |||| | || || |||| |
Sbjct 4570 AACTCCATCCAATCAAACGGGTT---CGTCACACCATACTCCTTCCCACAACCAAGCGCA 4514
Query 794015 CGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCC 794074
| ||| || | ||| || || || || ||||| | | ||| | | ||||||| ||
Sbjct 4513 CCCAA-CAACCTGTCTGCCACAAACTCGATGTAGCGACTCATTAAATCCCCGTTCATCCC 4455
Query 794075 GATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131
| | ||| ||| |||| || | ||||||||| |||| ||||| || |||||
Sbjct 4454 AACTAACGCGCAGGGGAGCGCGTCACAGACAAACTCCCTCTCAATCTCCACCGCCTC 4398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7911450183793632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |