Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq16048 87.8 3e-11 seq15946 87.8 3e-11 seq11586 87.8 3e-11 >seq16048 Length=246288 Score = 87.8 bits (96), Expect = 3e-11 Identities = 164/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 793899 GCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 793958 ||||| |||||| || || ||| ||| || ||||| ||||| |||| | ||| ||| Sbjct 204807 GCCTTCTGATACTCCCCGACACGCTTCTCAAAGAAGTTTGTCTTCCCCTGCAACGAAATC 204748 Query 793959 AACTCCATCCACGGGAACGGGTTGGCCGTCA---GGTAGTGCTTCTCGCACCCGAGCG-A 794014 ||||||||||| |||||||| ||||| || | |||| | || || |||| | Sbjct 204747 AACTCCATCCAATCAAACGGGTT---CGTCACACCATACTCCTTCCCACAACCAAGCGCA 204691 Query 794015 CGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCC 794074 | ||| || | ||| || || || || ||||| | | ||| | | ||||||| || Sbjct 204690 CCCAA-CAACCTGTCTGCCACAAACTCGATGTAGCGACTCATTAAATCCCCGTTCATCCC 204632 Query 794075 GATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 | | ||| ||| |||| || | ||||||||| |||| ||||| || ||||| Sbjct 204631 AACTAACGCGCAGGGGAGCGCGTCACAGACAAACTCCCTCTCAATCTCCACCGCCTC 204575 >seq15946 Length=172941 Score = 87.8 bits (96), Expect = 3e-11 Identities = 164/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 793899 GCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 793958 ||||| |||||| || || ||| ||| || ||||| ||||| |||| | ||| ||| Sbjct 58872 GCCTTCTGATACTCCCCGACACGCTTCTCAAAGAAGTTTGTCTTCCCCTGCAACGAAATC 58813 Query 793959 AACTCCATCCACGGGAACGGGTTGGCCGTCA---GGTAGTGCTTCTCGCACCCGAGCG-A 794014 ||||||||||| |||||||| ||||| || | |||| | || || |||| | Sbjct 58812 AACTCCATCCAATCAAACGGGTT---CGTCACACCATACTCCTTCCCACAACCAAGCGCA 58756 Query 794015 CGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCC 794074 | ||| || | ||| || || || || ||||| | | ||| | | ||||||| || Sbjct 58755 CCCAA-CAACCTGTCTGCCACAAACTCGATGTAGCGACTCATTAAATCCCCGTTCATCCC 58697 Query 794075 GATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 | | ||| ||| |||| || | ||||||||| |||| ||||| || ||||| Sbjct 58696 AACTAACGCGCAGGGGAGCGCGTCACAGACAAACTCCCTCTCAATCTCCACCGCCTC 58640 >seq11586 Length=26096 Score = 87.8 bits (96), Expect = 3e-11 Identities = 164/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 793899 GCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 793958 ||||| |||||| || || ||| ||| || ||||| ||||| |||| | ||| ||| Sbjct 4630 GCCTTCTGATACTCCCCGACACGCTTCTCAAAGAAGTTTGTCTTCCCCTGCAACGAAATC 4571 Query 793959 AACTCCATCCACGGGAACGGGTTGGCCGTCA---GGTAGTGCTTCTCGCACCCGAGCG-A 794014 ||||||||||| |||||||| ||||| || | |||| | || || |||| | Sbjct 4570 AACTCCATCCAATCAAACGGGTT---CGTCACACCATACTCCTTCCCACAACCAAGCGCA 4514 Query 794015 CGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCC 794074 | ||| || | ||| || || || || ||||| | | ||| | | ||||||| || Sbjct 4513 CCCAA-CAACCTGTCTGCCACAAACTCGATGTAGCGACTCATTAAATCCCCGTTCATCCC 4455 Query 794075 GATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 | | ||| ||| |||| || | ||||||||| |||| ||||| || ||||| Sbjct 4454 AACTAACGCGCAGGGGAGCGCGTCACAGACAAACTCCCTCTCAATCTCCACCGCCTC 4398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7911450183793632